Wall clock time and date at job start Tue Mar 31 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00198 * 2 1 4 4 C 1.53002 * 109.47028 * 180.02562 * 3 2 1 5 5 O 1.42894 * 109.47735 * 64.99839 * 4 3 2 6 6 C 1.42895 * 114.00509 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47489 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47168 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 H 1.08992 * 112.96820 * 53.31557 * 12 11 10 14 14 C 1.53941 * 113.77067 * 184.99979 * 12 11 10 15 15 C 1.53947 * 86.29265 * 137.90671 * 14 12 11 16 16 N 1.47580 * 86.11419 * 336.39216 * 15 14 12 17 17 C 1.36940 * 134.49355 * 204.64613 * 16 15 14 18 18 H 1.07999 * 120.00255 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99967 * 359.97438 * 17 16 15 20 20 N 1.31627 * 120.00046 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00311 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47039 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47448 * 120.00032 * 21 19 17 24 24 H 1.48498 * 109.47332 * 240.00373 * 21 19 17 25 25 H 1.08999 * 109.47122 * 300.00728 * 1 2 3 26 26 H 1.09004 * 109.46427 * 60.00354 * 1 2 3 27 27 H 1.08998 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47135 * 60.00200 * 3 2 1 29 29 H 1.09000 * 109.47032 * 299.99782 * 3 2 1 30 30 H 1.09009 * 109.46925 * 304.99614 * 4 3 2 31 31 H 1.09001 * 109.47218 * 185.00131 * 4 3 2 32 32 H 1.09000 * 109.46932 * 59.99700 * 6 5 4 33 33 H 1.09002 * 109.46707 * 299.99804 * 6 5 4 34 34 H 1.08998 * 109.46837 * 59.99792 * 7 6 5 35 35 H 1.09002 * 109.46926 * 299.99596 * 7 6 5 36 36 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 37 37 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 38 38 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 39 39 H 1.09002 * 113.74364 * 252.24812 * 14 12 11 40 40 H 1.09004 * 113.74460 * 23.56114 * 14 12 11 41 41 H 1.08994 * 113.77068 * 90.69228 * 15 14 12 42 42 H 1.09000 * 113.76912 * 221.98297 * 15 14 12 43 43 H 0.96993 * 119.99842 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9650 0.5796 -1.2219 6 6 5.3812 0.4190 -1.3245 7 6 5.7247 -0.2341 -2.6647 8 6 7.2183 -0.4029 -2.7731 9 8 7.9373 -0.0364 -1.8678 10 7 7.7551 -0.9611 -3.8762 11 6 9.2074 -1.1197 -3.9841 12 6 9.5509 -1.7740 -5.3238 13 1 9.1176 -1.2508 -6.1762 14 6 11.0463 -2.0992 -5.4903 15 6 10.5854 -3.4347 -6.1018 16 7 9.3340 -3.2336 -5.3459 17 6 8.3619 -4.0668 -4.8599 18 1 7.5192 -3.6577 -4.3224 19 6 8.4596 -5.4372 -5.0581 20 7 9.4869 -5.9359 -5.7128 21 14 7.1334 -6.5737 -4.3959 22 1 6.0938 -5.7706 -3.7034 23 1 6.5141 -7.3200 -5.5205 24 1 7.7375 -7.5340 -3.4377 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8515 0.5681 0.8410 31 1 3.9787 2.1764 0.0889 32 1 5.7350 -0.2135 -0.5103 33 1 5.8629 1.3948 -1.2622 34 1 5.3709 0.3988 -3.4785 35 1 5.2430 -1.2099 -2.7274 36 1 7.1800 -1.2539 -4.6004 37 1 9.6851 -0.1417 -3.9249 38 1 9.5659 -1.7490 -3.1695 39 1 11.5612 -1.4477 -6.1965 40 1 11.5792 -2.2097 -4.5458 41 1 10.4555 -3.4010 -7.1835 42 1 11.1679 -4.2941 -5.7700 43 1 9.5550 -6.8934 -5.8517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670729972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:37 Heat of formation + Delta-G solvation = -79.800615 kcal Electronic energy + Delta-G solvation = -22457.558680 eV Core-core repulsion = 18925.975005 eV Total energy + Delta-G solvation = -3531.583676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.54254 -38.58785 -37.93506 -37.26479 -34.05531 -32.25792 -32.05877 -29.96969 -28.00252 -27.55496 -26.50408 -23.72286 -23.36604 -22.77867 -21.83724 -20.09295 -19.06118 -17.53083 -17.07544 -16.75310 -16.22290 -15.97640 -15.89718 -15.41279 -15.25723 -15.18479 -14.61430 -14.02630 -13.71307 -13.62855 -13.43173 -12.98864 -12.84701 -12.47991 -11.91250 -11.89897 -11.53666 -11.43517 -11.28139 -11.14974 -11.10549 -11.01357 -10.73692 -10.52086 -10.02181 -9.97603 -9.74348 -9.70595 -9.66025 -9.33037 -8.79964 -8.58568 -6.89331 -5.76267 -3.08894 2.92806 3.16501 3.39338 3.45378 3.47186 3.49275 3.91325 4.44053 4.71733 4.87532 4.88890 4.99396 5.04543 5.06322 5.08266 5.15116 5.20971 5.34982 5.40723 5.41274 5.44878 5.54558 5.62489 5.74246 5.81081 5.86219 5.92190 6.09064 6.31651 6.40439 6.62024 6.71660 6.84800 6.88745 7.08204 7.25120 7.41138 7.59646 7.87693 7.98788 8.53581 9.04709 9.71507 10.59387 11.40559 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.003359 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.379247 B = 8333.728902 C = 9872.154165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.065 3.935 5 O -0.384 6.384 6 C 0.080 3.920 7 C -0.140 4.140 8 C 0.515 3.485 9 O -0.556 6.556 10 N -0.712 5.712 11 C 0.123 3.877 12 C 0.126 3.874 13 H 0.050 0.950 14 C -0.156 4.156 15 C 0.158 3.842 16 N -0.603 5.603 17 C -0.219 4.219 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.907 3.093 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.290 1.290 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.404 0.596 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.026 0.974 42 H 0.073 0.927 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.431 15.691 7.217 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.012 4.012 5 O -0.303 6.303 6 C 0.003 3.997 7 C -0.180 4.180 8 C 0.301 3.699 9 O -0.435 6.435 10 N -0.362 5.362 11 C -0.001 4.001 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.195 4.195 15 C 0.033 3.967 16 N -0.329 5.329 17 C -0.346 4.346 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.738 3.262 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.217 1.217 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.238 0.762 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.092 0.908 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.070 15.393 7.768 20.490 hybrid contribution -1.143 -0.589 0.023 1.286 sum -12.213 14.804 7.791 20.713 Atomic orbital electron populations 1.22748 0.81148 1.02927 0.99748 1.87995 1.19520 1.27264 1.95339 1.22575 0.92513 0.85530 1.00751 1.22481 0.93109 0.97635 0.87977 1.87868 1.22425 1.82204 1.37842 1.22112 0.80527 1.00067 0.96980 1.21458 0.93381 1.04184 0.99005 1.20297 0.89889 0.77474 0.82238 1.90671 1.63052 1.50923 1.38858 1.45949 1.09179 1.61252 1.19816 1.21764 0.79226 0.99486 0.99671 1.22503 0.94336 0.87694 0.93655 0.93309 1.23776 0.94935 0.99771 1.01016 1.22198 0.86704 0.94090 0.93684 1.46095 1.24985 0.99025 1.62841 1.19002 1.00308 0.87216 1.28118 0.90259 1.24768 0.98332 0.96604 1.00736 1.69832 1.29928 1.11574 1.45394 0.86116 0.80944 0.81068 0.78071 1.20446 1.21788 1.21731 0.94274 0.94031 0.89536 0.91902 0.92401 0.92311 0.91734 0.92322 0.92593 0.88329 0.87870 0.76169 0.92218 0.90952 0.92802 0.90500 0.95577 0.90827 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.38 10.67 -40.07 -0.43 -4.81 16 3 C 0.06 0.56 6.32 37.16 0.23 0.80 16 4 C 0.06 0.65 6.32 37.16 0.23 0.88 16 5 O -0.38 -5.01 10.31 -40.07 -0.41 -5.43 16 6 C 0.08 1.05 5.23 37.16 0.19 1.24 16 7 C -0.14 -1.85 6.07 -27.89 -0.17 -2.02 16 8 C 0.52 8.51 7.83 -10.98 -0.09 8.42 16 9 O -0.56 -10.89 15.98 5.56 0.09 -10.80 16 10 N -0.71 -11.89 5.53 -60.29 -0.33 -12.22 16 11 C 0.12 2.22 5.54 -4.04 -0.02 2.20 16 12 C 0.13 2.40 4.33 -66.86 -0.29 2.11 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.16 -2.85 7.86 -25.81 -0.20 -3.05 16 15 C 0.16 3.64 7.51 -2.97 -0.02 3.62 16 16 N -0.60 -14.72 3.57 -170.77 -0.61 -15.33 16 17 C -0.22 -5.89 10.51 -15.06 -0.16 -6.05 16 18 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -27.12 11.39 55.49 0.63 -26.49 16 21 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.40 6.33 8.47 -40.82 -0.35 5.98 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -33.54 362.38 -7.34 -40.88 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.44 Total: 2.36 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 0.73 Total: 9.18 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.31 Total: -54.04 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.75 Total: -21.03 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.54 -7.34 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670729972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.920 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds