Wall clock time and date at job start Tue Mar 31 2020 02:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00198 * 2 1 4 4 C 1.53002 * 109.47028 * 180.02562 * 3 2 1 5 5 O 1.42894 * 109.47735 * 64.99839 * 4 3 2 6 6 C 1.42895 * 114.00509 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47489 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47168 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 H 1.08992 * 112.96820 * 53.31557 * 12 11 10 14 14 C 1.53941 * 113.77067 * 184.99979 * 12 11 10 15 15 C 1.53947 * 86.29265 * 137.90671 * 14 12 11 16 16 N 1.47580 * 86.11419 * 336.39216 * 15 14 12 17 17 C 1.36940 * 134.49355 * 204.64613 * 16 15 14 18 18 H 1.07999 * 120.00255 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99967 * 359.97438 * 17 16 15 20 20 N 1.31627 * 120.00046 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00311 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47039 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47448 * 120.00032 * 21 19 17 24 24 H 1.48498 * 109.47332 * 240.00373 * 21 19 17 25 25 H 1.08999 * 109.47122 * 300.00728 * 1 2 3 26 26 H 1.09004 * 109.46427 * 60.00354 * 1 2 3 27 27 H 1.08998 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47135 * 60.00200 * 3 2 1 29 29 H 1.09000 * 109.47032 * 299.99782 * 3 2 1 30 30 H 1.09009 * 109.46925 * 304.99614 * 4 3 2 31 31 H 1.09001 * 109.47218 * 185.00131 * 4 3 2 32 32 H 1.09000 * 109.46932 * 59.99700 * 6 5 4 33 33 H 1.09002 * 109.46707 * 299.99804 * 6 5 4 34 34 H 1.08998 * 109.46837 * 59.99792 * 7 6 5 35 35 H 1.09002 * 109.46926 * 299.99596 * 7 6 5 36 36 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 37 37 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 38 38 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 39 39 H 1.09002 * 113.74364 * 252.24812 * 14 12 11 40 40 H 1.09004 * 113.74460 * 23.56114 * 14 12 11 41 41 H 1.08994 * 113.77068 * 90.69228 * 15 14 12 42 42 H 1.09000 * 113.76912 * 221.98297 * 15 14 12 43 43 H 0.96993 * 119.99842 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9650 0.5796 -1.2219 6 6 5.3812 0.4190 -1.3245 7 6 5.7247 -0.2341 -2.6647 8 6 7.2183 -0.4029 -2.7731 9 8 7.9373 -0.0364 -1.8678 10 7 7.7551 -0.9611 -3.8762 11 6 9.2074 -1.1197 -3.9841 12 6 9.5509 -1.7740 -5.3238 13 1 9.1176 -1.2508 -6.1762 14 6 11.0463 -2.0992 -5.4903 15 6 10.5854 -3.4347 -6.1018 16 7 9.3340 -3.2336 -5.3459 17 6 8.3619 -4.0668 -4.8599 18 1 7.5192 -3.6577 -4.3224 19 6 8.4596 -5.4372 -5.0581 20 7 9.4869 -5.9359 -5.7128 21 14 7.1334 -6.5737 -4.3959 22 1 6.0938 -5.7706 -3.7034 23 1 6.5141 -7.3200 -5.5205 24 1 7.7375 -7.5340 -3.4377 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8515 0.5681 0.8410 31 1 3.9787 2.1764 0.0889 32 1 5.7350 -0.2135 -0.5103 33 1 5.8629 1.3948 -1.2622 34 1 5.3709 0.3988 -3.4785 35 1 5.2430 -1.2099 -2.7274 36 1 7.1800 -1.2539 -4.6004 37 1 9.6851 -0.1417 -3.9249 38 1 9.5659 -1.7490 -3.1695 39 1 11.5612 -1.4477 -6.1965 40 1 11.5792 -2.2097 -4.5458 41 1 10.4555 -3.4010 -7.1835 42 1 11.1679 -4.2941 -5.7700 43 1 9.5550 -6.8934 -5.8517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670729972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:36 Heat of formation + Delta-G solvation = -104.511364 kcal Electronic energy + Delta-G solvation = -22458.630219 eV Core-core repulsion = 18925.975005 eV Total energy + Delta-G solvation = -3532.655214 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.89320 -39.67285 -39.30243 -38.13947 -35.51199 -34.19944 -33.14712 -30.83532 -29.88118 -29.04070 -27.13782 -25.28595 -24.94735 -23.51116 -23.31548 -21.46261 -20.74577 -18.85213 -18.25781 -17.83907 -17.34199 -17.19837 -17.11553 -16.82920 -16.30026 -16.12963 -15.97251 -15.68127 -15.27490 -14.90081 -14.60642 -14.34819 -14.06882 -13.52571 -13.29081 -13.14670 -12.96568 -12.69207 -12.64728 -12.57482 -12.43716 -12.26638 -12.16492 -11.96123 -11.83906 -11.50579 -11.37771 -10.87228 -10.80925 -10.66209 -10.60333 -10.00756 -8.87431 -7.86346 -5.17778 1.44270 1.45719 1.54162 1.62201 2.04096 2.47611 2.83642 2.88646 3.34993 3.40656 3.75918 3.96055 4.03019 4.04583 4.13461 4.19604 4.25790 4.37336 4.44391 4.46750 4.53139 4.57018 4.61351 4.65896 4.71380 4.73769 4.83091 4.85840 4.87013 4.90075 5.07127 5.12325 5.35499 5.47158 5.62905 5.76598 5.99425 6.12556 6.28310 6.56297 6.96869 7.22759 7.66611 8.61138 9.30887 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.003359 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.379247 B = 8333.728902 C = 9872.154165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.061 3.939 4 C 0.055 3.945 5 O -0.399 6.399 6 C 0.085 3.915 7 C -0.132 4.132 8 C 0.515 3.485 9 O -0.588 6.588 10 N -0.711 5.711 11 C 0.132 3.868 12 C 0.133 3.867 13 H 0.073 0.927 14 C -0.131 4.131 15 C 0.148 3.852 16 N -0.631 5.631 17 C -0.211 4.211 18 H 0.087 0.913 19 C -0.072 4.072 20 N -0.956 5.956 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.293 1.293 24 H -0.299 1.299 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.410 0.590 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.023 0.977 42 H 0.037 0.963 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.757 17.946 7.402 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.015 4.015 4 C -0.021 4.021 5 O -0.319 6.319 6 C 0.008 3.992 7 C -0.171 4.171 8 C 0.303 3.697 9 O -0.470 6.470 10 N -0.361 5.361 11 C 0.007 3.993 12 C 0.027 3.973 13 H 0.091 0.909 14 C -0.170 4.170 15 C 0.023 3.977 16 N -0.358 5.358 17 C -0.339 4.339 18 H 0.104 0.896 19 C -0.265 4.265 20 N -0.606 5.606 21 Si 0.795 3.205 22 H -0.190 1.190 23 H -0.221 1.221 24 H -0.227 1.227 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.123 0.877 36 H 0.246 0.754 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.056 0.944 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.423 17.695 7.951 23.037 hybrid contribution -0.735 -1.196 -0.013 1.404 sum -13.159 16.500 7.938 22.548 Atomic orbital electron populations 1.22902 0.79585 1.03549 1.00984 1.87937 1.21442 1.28873 1.95628 1.22724 0.91540 0.84966 1.02301 1.22766 0.94207 0.98512 0.86632 1.87840 1.21984 1.82745 1.39363 1.22001 0.80948 0.99994 0.96290 1.21415 0.90705 1.04866 1.00149 1.20808 0.91098 0.76439 0.81389 1.90658 1.64152 1.52290 1.39881 1.45940 1.08744 1.61189 1.20252 1.21545 0.80288 0.99771 0.97707 1.22680 0.94863 0.84977 0.94788 0.90930 1.23568 0.94837 0.97117 1.01444 1.22176 0.86507 0.95483 0.93514 1.46458 1.24822 1.01581 1.62911 1.19365 1.00385 0.87704 1.26481 0.89572 1.25510 1.00438 0.98277 1.02259 1.70007 1.31818 1.11100 1.47643 0.85188 0.78987 0.79180 0.77137 1.19002 1.22062 1.22671 0.92486 0.93293 0.89353 0.89155 0.91909 0.92894 0.89391 0.93920 0.92020 0.85701 0.87745 0.75437 0.90011 0.94130 0.88687 0.90444 0.95946 0.94414 0.94625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.08 10.67 -144.35 -1.54 -10.62 16 3 C 0.06 0.97 6.32 71.98 0.45 1.42 16 4 C 0.06 1.01 6.32 71.98 0.45 1.47 16 5 O -0.40 -9.84 10.31 -144.35 -1.49 -11.32 16 6 C 0.08 2.11 5.23 71.98 0.38 2.48 16 7 C -0.13 -3.23 6.07 29.85 0.18 -3.04 16 8 C 0.51 16.19 7.83 87.65 0.69 16.88 16 9 O -0.59 -22.46 15.98 -3.04 -0.05 -22.51 16 10 N -0.71 -22.34 5.53 -463.05 -2.56 -24.90 16 11 C 0.13 4.50 5.54 86.38 0.48 4.98 16 12 C 0.13 4.77 4.33 45.09 0.20 4.97 16 13 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.13 -4.48 7.86 31.25 0.25 -4.23 16 15 C 0.15 6.82 7.51 86.48 0.65 7.47 16 16 N -0.63 -30.44 3.57 -694.20 -2.48 -32.92 16 17 C -0.21 -11.30 10.51 84.03 0.88 -10.42 16 18 H 0.09 4.38 7.80 -2.91 -0.02 4.36 16 19 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 20 N -0.96 -57.86 11.39 21.65 0.25 -57.62 16 21 Si 0.97 46.25 29.55 68.60 2.03 48.27 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.18 8.10 -2.39 -0.02 1.16 16 33 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 34 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.41 11.90 8.47 -92.71 -0.79 11.11 16 37 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 41 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.04 1.99 7.16 -2.39 -0.02 1.97 16 43 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -73.32 362.38 0.67 -72.65 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.19 Total: 19.04 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 6.32 Total: 19.93 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -4.79 Total: -115.44 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -3.08 Total: -44.45 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -73.32 0.67 -72.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670729972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.866 kcal (2) G-P(sol) polarization free energy of solvation -73.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds