Wall clock time and date at job start Tue Mar 31 2020 02:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99610 * 2 1 4 4 C 1.52996 * 109.47110 * 184.93151 * 3 2 1 5 5 H 1.09003 * 109.47187 * 305.09865 * 4 3 2 6 6 O 1.42897 * 109.47318 * 65.09474 * 4 3 2 7 7 C 1.42905 * 114.00432 * 270.00045 * 6 4 3 8 8 C 1.50694 * 109.47513 * 185.09804 * 4 3 2 9 9 O 1.21283 * 120.00034 * 245.42404 * 8 4 3 10 10 N 1.34774 * 120.00145 * 65.41530 * 8 4 3 11 11 C 1.46503 * 120.00381 * 185.04890 * 10 8 4 12 12 C 1.53001 * 109.47067 * 184.77298 * 11 10 8 13 13 N 1.46494 * 112.85110 * 69.12069 * 12 11 10 14 14 C 1.36935 * 120.00365 * 53.96216 * 13 12 11 15 15 H 1.08004 * 120.00193 * 354.92153 * 14 13 12 16 16 C 1.38807 * 120.00398 * 174.92300 * 14 13 12 17 17 N 1.31623 * 119.99911 * 5.10298 * 16 14 13 18 18 Si 1.86800 * 120.00266 * 185.10585 * 16 14 13 19 19 H 1.48499 * 109.47144 * 55.00173 * 18 16 14 20 20 H 1.48506 * 109.47256 * 174.99980 * 18 16 14 21 21 H 1.48497 * 109.47210 * 295.00060 * 18 16 14 22 22 C 1.53785 * 113.68734 * 200.38559 * 12 11 10 23 23 C 1.53781 * 87.07795 * 139.99103 * 22 12 11 24 24 C 1.53779 * 87.08444 * 334.56842 * 23 22 12 25 25 H 1.08996 * 109.47341 * 64.94374 * 1 2 3 26 26 H 1.09005 * 109.46952 * 184.94392 * 1 2 3 27 27 H 1.09005 * 109.47168 * 304.93998 * 1 2 3 28 28 H 1.08996 * 109.47068 * 64.92572 * 3 2 1 29 29 H 1.08999 * 109.46835 * 304.92597 * 3 2 1 30 30 H 1.08999 * 109.47142 * 179.97438 * 7 6 4 31 31 H 1.08989 * 109.47309 * 300.00376 * 7 6 4 32 32 H 1.09004 * 109.46761 * 60.00231 * 7 6 4 33 33 H 0.97002 * 120.00056 * 5.04623 * 10 8 4 34 34 H 1.08993 * 109.47239 * 64.76781 * 11 10 8 35 35 H 1.09006 * 109.46486 * 304.76881 * 11 10 8 36 36 H 0.97006 * 119.99901 * 233.68503 * 13 12 11 37 37 H 0.96998 * 120.00119 * 179.97438 * 17 16 14 38 38 H 1.09002 * 113.61428 * 254.54182 * 22 12 11 39 39 H 1.08998 * 113.61250 * 25.44638 * 22 12 11 40 40 H 1.09009 * 113.61361 * 220.01828 * 23 22 12 41 41 H 1.09004 * 113.61374 * 89.11649 * 23 22 12 42 42 H 1.09002 * 113.61132 * 270.88987 * 24 23 22 43 43 H 1.08994 * 113.61779 * 139.97952 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1870 -0.1240 5 1 3.9103 0.5407 0.6673 6 8 3.8625 0.6275 -1.3963 7 6 3.9460 -0.7991 -1.4001 8 6 4.1529 2.5537 0.0016 9 8 4.7320 3.0455 -0.9437 10 7 4.0658 3.2295 1.1644 11 6 4.5729 4.6011 1.2543 12 6 4.4625 5.0919 2.6992 13 7 5.3891 4.4080 3.6047 14 6 6.7278 4.3762 3.3185 15 1 7.0906 4.7829 2.3861 16 6 7.6188 3.8211 4.2268 17 7 7.1686 3.2357 5.3163 18 14 9.4565 3.9051 3.9029 19 1 9.8574 5.3189 3.6891 20 1 10.1906 3.3535 5.0701 21 1 9.7826 3.1096 2.6921 22 6 4.4864 6.6236 2.8349 23 6 3.4009 6.4663 3.9128 24 6 3.0175 5.1467 3.2225 25 1 -0.3634 0.4352 -0.9309 26 1 -0.3633 -1.0239 0.0886 27 1 -0.3634 0.5886 0.8425 28 1 1.7601 1.8146 0.9308 29 1 1.6204 1.8767 -0.8426 30 1 4.2014 -1.1454 -2.4016 31 1 4.7147 -1.1199 -0.6972 32 1 2.9849 -1.2200 -1.1046 33 1 3.6674 2.8079 1.9418 34 1 3.9849 5.2491 0.6045 35 1 5.6169 4.6236 0.9416 36 1 5.0548 3.9812 4.4091 37 1 7.7911 2.8475 5.9508 38 1 5.4294 7.0133 3.2184 39 1 4.1429 7.1464 1.9423 40 1 2.6223 7.2275 3.8627 41 1 3.8001 6.3332 4.9183 42 1 2.2725 5.2658 2.4358 43 1 2.7747 4.3441 3.9189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673209742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:37 Heat of formation + Delta-G solvation = -90.315202 kcal Electronic energy + Delta-G solvation = -23827.060461 eV Core-core repulsion = 20295.020838 eV Total energy + Delta-G solvation = -3532.039622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.94207 -38.86502 -37.90667 -36.86913 -33.97757 -33.29725 -31.05955 -29.98473 -27.47646 -26.91913 -25.86137 -25.27650 -24.05652 -23.35692 -21.65463 -20.10971 -18.31299 -17.53725 -17.26988 -16.96820 -16.51811 -15.89273 -15.52388 -15.28282 -14.95252 -14.57182 -14.28499 -14.16402 -14.03182 -13.74537 -13.18172 -12.95384 -12.70052 -12.65567 -12.19776 -11.91516 -11.75164 -11.54440 -11.37299 -11.23067 -11.02814 -10.84755 -10.41773 -10.25477 -10.10135 -10.00568 -9.77585 -9.68236 -9.51037 -9.32341 -8.88901 -8.56266 -7.06492 -5.84311 -3.13459 2.77870 3.08304 3.43054 3.47254 3.49194 3.61316 4.17636 4.53456 4.73158 4.92538 4.99966 5.09655 5.14034 5.14109 5.22093 5.23557 5.27761 5.37964 5.42718 5.44515 5.51071 5.55952 5.58431 5.73376 5.80431 5.99601 6.07952 6.16329 6.28484 6.34879 6.48870 6.69624 6.82773 6.85516 6.93385 7.00218 7.09253 7.69702 7.88646 8.34254 8.55165 9.46275 9.98978 10.34162 11.37653 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.004961 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.218934 B = 5642.861165 C = 6629.955395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.047 3.953 4 C 0.076 3.924 5 H 0.095 0.905 6 O -0.356 6.356 7 C 0.028 3.972 8 C 0.515 3.485 9 O -0.524 6.524 10 N -0.703 5.703 11 C 0.123 3.877 12 C 0.175 3.825 13 N -0.698 5.698 14 C -0.238 4.238 15 H 0.071 0.929 16 C -0.007 4.007 17 N -0.931 5.931 18 Si 0.904 3.096 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.156 4.156 23 C -0.129 4.129 24 C -0.147 4.147 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.400 0.600 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.655 -3.630 -7.245 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.030 4.030 4 C 0.014 3.986 5 H 0.113 0.887 6 O -0.274 6.274 7 C -0.068 4.068 8 C 0.298 3.702 9 O -0.399 6.399 10 N -0.354 5.354 11 C -0.002 4.002 12 C 0.082 3.918 13 N -0.339 5.339 14 C -0.369 4.369 15 H 0.089 0.911 16 C -0.203 4.203 17 N -0.579 5.579 18 Si 0.734 3.266 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.197 4.197 23 C -0.167 4.167 24 C -0.185 4.185 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.234 0.766 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.221 0.779 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.899 -3.322 -8.141 16.447 hybrid contribution 0.582 -0.324 0.814 1.052 sum -13.318 -3.647 -7.326 15.631 Atomic orbital electron populations 1.22760 0.80776 1.02764 1.00199 1.87853 1.19997 1.27320 1.95473 1.23037 0.92865 0.85552 1.01571 1.21935 0.92906 0.94790 0.88997 0.88749 1.87993 1.90708 1.20623 1.28045 1.22935 1.00963 0.80543 1.02363 1.19935 0.80837 0.85872 0.83531 1.90703 1.41945 1.68540 1.38758 1.45716 1.61664 1.16074 1.11946 1.21803 0.99959 0.80500 0.97947 1.20794 0.89929 0.92015 0.89069 1.42072 1.03275 1.63441 1.25080 1.19076 0.82879 1.33278 1.01639 0.91078 1.24708 0.97906 1.00897 0.96806 1.69651 1.33655 1.42217 1.12356 0.86320 0.85545 0.77778 0.76931 1.21082 1.21718 1.21268 1.23453 0.99559 0.98645 0.98003 1.22637 0.98206 0.96692 0.99151 1.23198 0.96767 0.98485 1.00030 0.93984 0.89573 0.93813 0.91615 0.91804 0.89766 0.94046 0.92412 0.76557 0.92649 0.90728 0.77851 0.93429 0.90771 0.91415 0.92719 0.90085 0.90418 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.41 8.84 -39.98 -0.35 -4.76 16 3 C 0.05 0.56 5.57 37.16 0.21 0.76 16 4 C 0.08 1.11 2.91 -27.89 -0.08 1.03 16 5 H 0.09 1.29 7.79 -51.93 -0.40 0.89 16 6 O -0.36 -5.70 9.88 -59.66 -0.59 -6.29 16 7 C 0.03 0.35 10.71 101.05 1.08 1.43 16 8 C 0.51 9.08 7.17 -10.99 -0.08 9.00 16 9 O -0.52 -11.41 16.49 -14.30 -0.24 -11.64 16 10 N -0.70 -11.56 5.32 -60.29 -0.32 -11.88 16 11 C 0.12 2.21 5.02 -4.04 -0.02 2.19 16 12 C 0.18 3.14 0.87 -131.01 -0.11 3.02 16 13 N -0.70 -15.81 5.24 -46.48 -0.24 -16.05 16 14 C -0.24 -6.23 9.41 -15.06 -0.14 -6.38 16 15 H 0.07 1.88 6.89 -52.48 -0.36 1.52 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 17 N -0.93 -26.88 13.07 55.49 0.73 -26.15 16 18 Si 0.90 22.23 29.56 -169.99 -5.02 17.21 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C -0.16 -2.61 7.40 -25.92 -0.19 -2.80 16 23 C -0.13 -1.94 7.99 -25.92 -0.21 -2.15 16 24 C -0.15 -2.12 6.88 -25.92 -0.18 -2.30 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.67 7.97 -51.93 -0.41 0.25 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.48 8.08 -51.94 -0.42 0.06 16 32 H 0.06 0.65 6.40 -51.93 -0.33 0.32 16 33 H 0.40 5.93 8.09 -40.82 -0.33 5.60 16 34 H 0.06 0.91 7.99 -51.93 -0.42 0.50 16 35 H 0.07 1.59 6.87 -51.93 -0.36 1.24 16 36 H 0.39 9.35 7.83 -40.82 -0.32 9.03 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.07 1.00 8.00 -51.93 -0.42 0.58 16 40 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 43 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -31.96 355.71 -6.52 -38.48 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.13 Total: 10.86 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 1.29 Total: 4.88 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.16 Total: -54.09 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -1.18 Total: -22.70 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.96 -6.52 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673209742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.837 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds