Wall clock time and date at job start Tue Mar 31 2020 02:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99610 * 2 1 4 4 C 1.52996 * 109.47110 * 184.93151 * 3 2 1 5 5 H 1.09003 * 109.47187 * 305.09865 * 4 3 2 6 6 O 1.42897 * 109.47318 * 65.09474 * 4 3 2 7 7 C 1.42905 * 114.00432 * 270.00045 * 6 4 3 8 8 C 1.50694 * 109.47513 * 185.09804 * 4 3 2 9 9 O 1.21283 * 120.00034 * 245.42404 * 8 4 3 10 10 N 1.34774 * 120.00145 * 65.41530 * 8 4 3 11 11 C 1.46503 * 120.00381 * 185.04890 * 10 8 4 12 12 C 1.53001 * 109.47067 * 184.77298 * 11 10 8 13 13 N 1.46494 * 112.85110 * 69.12069 * 12 11 10 14 14 C 1.36935 * 120.00365 * 53.96216 * 13 12 11 15 15 H 1.08004 * 120.00193 * 354.92153 * 14 13 12 16 16 C 1.38807 * 120.00398 * 174.92300 * 14 13 12 17 17 N 1.31623 * 119.99911 * 5.10298 * 16 14 13 18 18 Si 1.86800 * 120.00266 * 185.10585 * 16 14 13 19 19 H 1.48499 * 109.47144 * 55.00173 * 18 16 14 20 20 H 1.48506 * 109.47256 * 174.99980 * 18 16 14 21 21 H 1.48497 * 109.47210 * 295.00060 * 18 16 14 22 22 C 1.53785 * 113.68734 * 200.38559 * 12 11 10 23 23 C 1.53781 * 87.07795 * 139.99103 * 22 12 11 24 24 C 1.53779 * 87.08444 * 334.56842 * 23 22 12 25 25 H 1.08996 * 109.47341 * 64.94374 * 1 2 3 26 26 H 1.09005 * 109.46952 * 184.94392 * 1 2 3 27 27 H 1.09005 * 109.47168 * 304.93998 * 1 2 3 28 28 H 1.08996 * 109.47068 * 64.92572 * 3 2 1 29 29 H 1.08999 * 109.46835 * 304.92597 * 3 2 1 30 30 H 1.08999 * 109.47142 * 179.97438 * 7 6 4 31 31 H 1.08989 * 109.47309 * 300.00376 * 7 6 4 32 32 H 1.09004 * 109.46761 * 60.00231 * 7 6 4 33 33 H 0.97002 * 120.00056 * 5.04623 * 10 8 4 34 34 H 1.08993 * 109.47239 * 64.76781 * 11 10 8 35 35 H 1.09006 * 109.46486 * 304.76881 * 11 10 8 36 36 H 0.97006 * 119.99901 * 233.68503 * 13 12 11 37 37 H 0.96998 * 120.00119 * 179.97438 * 17 16 14 38 38 H 1.09002 * 113.61428 * 254.54182 * 22 12 11 39 39 H 1.08998 * 113.61250 * 25.44638 * 22 12 11 40 40 H 1.09009 * 113.61361 * 220.01828 * 23 22 12 41 41 H 1.09004 * 113.61374 * 89.11649 * 23 22 12 42 42 H 1.09002 * 113.61132 * 270.88987 * 24 23 22 43 43 H 1.08994 * 113.61779 * 139.97952 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1870 -0.1240 5 1 3.9103 0.5407 0.6673 6 8 3.8625 0.6275 -1.3963 7 6 3.9460 -0.7991 -1.4001 8 6 4.1529 2.5537 0.0016 9 8 4.7320 3.0455 -0.9437 10 7 4.0658 3.2295 1.1644 11 6 4.5729 4.6011 1.2543 12 6 4.4625 5.0919 2.6992 13 7 5.3891 4.4080 3.6047 14 6 6.7278 4.3762 3.3185 15 1 7.0906 4.7829 2.3861 16 6 7.6188 3.8211 4.2268 17 7 7.1686 3.2357 5.3163 18 14 9.4565 3.9051 3.9029 19 1 9.8574 5.3189 3.6891 20 1 10.1906 3.3535 5.0701 21 1 9.7826 3.1096 2.6921 22 6 4.4864 6.6236 2.8349 23 6 3.4009 6.4663 3.9128 24 6 3.0175 5.1467 3.2225 25 1 -0.3634 0.4352 -0.9309 26 1 -0.3633 -1.0239 0.0886 27 1 -0.3634 0.5886 0.8425 28 1 1.7601 1.8146 0.9308 29 1 1.6204 1.8767 -0.8426 30 1 4.2014 -1.1454 -2.4016 31 1 4.7147 -1.1199 -0.6972 32 1 2.9849 -1.2200 -1.1046 33 1 3.6674 2.8079 1.9418 34 1 3.9849 5.2491 0.6045 35 1 5.6169 4.6236 0.9416 36 1 5.0548 3.9812 4.4091 37 1 7.7911 2.8475 5.9508 38 1 5.4294 7.0133 3.2184 39 1 4.1429 7.1464 1.9423 40 1 2.6223 7.2275 3.8627 41 1 3.8001 6.3332 4.9183 42 1 2.2725 5.2658 2.4358 43 1 2.7747 4.3441 3.9189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673209742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:36 Heat of formation + Delta-G solvation = -113.622204 kcal Electronic energy + Delta-G solvation = -23828.071128 eV Core-core repulsion = 20295.020838 eV Total energy + Delta-G solvation = -3533.050290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27366 -40.16544 -39.02213 -37.90050 -35.42160 -35.21822 -32.27469 -31.73325 -28.70539 -27.89227 -26.76866 -26.65429 -25.79460 -24.54950 -23.01102 -21.47245 -19.73704 -19.21039 -18.67647 -18.18156 -17.56006 -16.95297 -16.72692 -16.52168 -16.19077 -16.02401 -15.85134 -15.48735 -15.25375 -14.96552 -14.89039 -14.31738 -13.97621 -13.75248 -13.45402 -13.11409 -12.97472 -12.91700 -12.79194 -12.67043 -12.40233 -12.19520 -12.16557 -11.98111 -11.55241 -11.40343 -11.12691 -10.91981 -10.84777 -10.72900 -10.45441 -10.02635 -8.98371 -7.95187 -5.20594 1.44830 1.45453 1.45599 1.51214 1.83834 2.54129 2.70240 3.05775 3.36782 3.69838 3.76477 3.81813 3.84758 3.92855 4.00989 4.09176 4.25736 4.32332 4.41348 4.53866 4.58167 4.62446 4.64712 4.67827 4.83930 4.86412 4.88979 4.92857 4.94156 5.01615 5.15289 5.32513 5.43404 5.48321 5.60746 5.73150 6.00184 6.08930 6.29533 6.55357 7.18895 7.36458 8.10607 8.33975 9.27106 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.004961 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.218934 B = 5642.861165 C = 6629.955395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.056 3.944 4 C 0.078 3.922 5 H 0.102 0.898 6 O -0.387 6.387 7 C 0.026 3.974 8 C 0.512 3.488 9 O -0.572 6.572 10 N -0.693 5.693 11 C 0.130 3.870 12 C 0.158 3.842 13 N -0.704 5.704 14 C -0.224 4.224 15 H 0.063 0.937 16 C -0.063 4.063 17 N -0.960 5.960 18 Si 0.953 3.047 19 H -0.280 1.280 20 H -0.294 1.294 21 H -0.290 1.290 22 C -0.155 4.155 23 C -0.122 4.122 24 C -0.127 4.127 25 H 0.047 0.953 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.410 0.590 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.378 0.622 37 H 0.250 0.750 38 H 0.042 0.958 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.982 -3.562 -7.601 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.021 4.021 4 C 0.017 3.983 5 H 0.120 0.880 6 O -0.305 6.305 7 C -0.069 4.069 8 C 0.298 3.702 9 O -0.451 6.451 10 N -0.344 5.344 11 C 0.005 3.995 12 C 0.067 3.933 13 N -0.344 5.344 14 C -0.356 4.356 15 H 0.081 0.919 16 C -0.256 4.256 17 N -0.611 5.611 18 Si 0.783 3.217 19 H -0.207 1.207 20 H -0.220 1.220 21 H -0.217 1.217 22 C -0.196 4.196 23 C -0.160 4.160 24 C -0.164 4.164 25 H 0.066 0.934 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.246 0.754 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.212 0.788 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.129 0.871 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.267 -3.240 -8.501 18.638 hybrid contribution 1.243 -0.327 0.842 1.537 sum -15.023 -3.567 -7.658 17.236 Atomic orbital electron populations 1.22979 0.78902 1.04160 1.01047 1.87814 1.21942 1.26850 1.95632 1.22881 0.90634 0.86093 1.02490 1.21923 0.94848 0.92675 0.88890 0.88007 1.87949 1.91092 1.22615 1.28821 1.23088 1.01603 0.78787 1.03468 1.20529 0.79983 0.86812 0.82893 1.90675 1.44112 1.69972 1.40334 1.45658 1.60967 1.15641 1.12130 1.21668 0.98034 0.81733 0.98111 1.21124 0.91641 0.92395 0.88156 1.42110 1.02772 1.63959 1.25527 1.19246 0.84705 1.30961 1.00663 0.91857 1.25269 1.00905 1.02132 0.97299 1.69757 1.34109 1.44014 1.13217 0.85523 0.82241 0.77644 0.76254 1.20662 1.21977 1.21699 1.23463 0.99038 0.97300 0.99780 1.22565 0.98110 0.97957 0.97347 1.23157 0.94545 0.98179 1.00550 0.93449 0.88059 0.92570 0.89603 0.92008 0.88290 0.93878 0.91443 0.75361 0.90495 0.94860 0.78815 0.94128 0.93913 0.88740 0.89539 0.92261 0.87147 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -8.20 8.84 -144.44 -1.28 -9.48 16 3 C 0.06 1.21 5.57 71.98 0.40 1.61 16 4 C 0.08 2.21 2.91 29.84 0.09 2.29 16 5 H 0.10 2.67 7.79 -2.39 -0.02 2.65 16 6 O -0.39 -12.14 9.88 -125.62 -1.24 -13.38 16 7 C 0.03 0.61 10.71 113.37 1.21 1.82 16 8 C 0.51 17.84 7.17 87.66 0.63 18.46 16 9 O -0.57 -25.20 16.49 15.94 0.26 -24.94 16 10 N -0.69 -21.99 5.32 -463.06 -2.47 -24.46 16 11 C 0.13 4.55 5.02 86.38 0.43 4.98 16 12 C 0.16 5.45 0.87 4.13 0.00 5.46 16 13 N -0.70 -31.89 5.24 -300.97 -1.58 -33.47 16 14 C -0.22 -11.89 9.41 84.03 0.79 -11.10 16 15 H 0.06 3.42 6.89 -2.91 -0.02 3.40 16 16 C -0.06 -3.53 5.50 84.86 0.47 -3.07 16 17 N -0.96 -56.32 13.07 21.65 0.28 -56.04 16 18 Si 0.95 46.51 29.56 68.60 2.03 48.53 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 21 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 22 C -0.16 -4.94 7.40 31.12 0.23 -4.71 16 23 C -0.12 -3.33 7.99 31.12 0.25 -3.08 16 24 C -0.13 -3.23 6.88 31.12 0.21 -3.02 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.09 1.47 7.97 -2.39 -0.02 1.45 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 0.96 8.08 -2.39 -0.02 0.94 16 32 H 0.07 1.41 6.40 -2.38 -0.02 1.40 16 33 H 0.41 11.40 8.09 -92.71 -0.75 10.65 16 34 H 0.08 2.37 7.99 -2.39 -0.02 2.35 16 35 H 0.03 1.44 6.87 -2.38 -0.02 1.43 16 36 H 0.38 18.33 7.83 -92.70 -0.73 17.60 16 37 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.09 2.50 8.00 -2.39 -0.02 2.48 16 40 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.11 2.18 8.10 -2.39 -0.02 2.16 16 43 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 Total: -1.00 -70.58 355.71 1.51 -69.07 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -0.47 Total: 32.92 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 5.97 Total: 11.23 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -3.76 Total: -113.96 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -2.26 Total: -47.80 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -70.58 1.51 -69.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673209742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.554 kcal (2) G-P(sol) polarization free energy of solvation -70.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds