Wall clock time and date at job start Tue Mar 31 2020 02:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47330 * 2 1 4 4 C 1.36933 * 120.00116 * 263.78500 * 3 2 1 5 5 H 1.08007 * 120.00477 * 142.60918 * 4 3 2 6 6 C 1.38815 * 120.00026 * 322.61870 * 4 3 2 7 7 N 1.31621 * 120.00234 * 157.38674 * 6 4 3 8 8 Si 1.86800 * 119.99805 * 337.38349 * 6 4 3 9 9 H 1.48502 * 109.47085 * 95.71606 * 8 6 4 10 10 H 1.48503 * 109.47237 * 215.71701 * 8 6 4 11 11 H 1.48495 * 109.47006 * 335.71772 * 8 6 4 12 12 C 1.46503 * 119.99990 * 83.78494 * 3 2 1 13 13 C 1.52997 * 109.47047 * 90.00321 * 12 3 2 14 14 N 1.46503 * 109.47047 * 180.02562 * 13 12 3 15 15 C 1.34782 * 119.99861 * 180.02562 * 14 13 12 16 16 O 1.21276 * 120.00118 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99496 * 179.97438 * 15 14 13 18 18 O 1.42905 * 109.46727 * 179.97438 * 17 15 14 19 19 C 1.42897 * 113.99869 * 180.02562 * 18 17 15 20 20 H 1.09009 * 110.43576 * 328.90966 * 19 18 17 21 21 C 1.54813 * 110.48716 * 206.22651 * 19 18 17 22 22 C 1.54998 * 102.08950 * 220.44295 * 21 19 18 23 23 O 1.44378 * 103.49134 * 37.02111 * 22 21 19 24 24 C 1.43747 * 106.97603 * 319.93794 * 23 22 21 25 25 H 1.09003 * 109.46894 * 300.00322 * 1 2 3 26 26 H 1.08998 * 109.46549 * 60.00091 * 1 2 3 27 27 H 1.08994 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47372 * 239.99693 * 2 1 3 29 29 H 1.09004 * 109.46850 * 119.99567 * 2 1 3 30 30 H 0.96997 * 119.99954 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47153 * 329.99621 * 12 3 2 32 32 H 1.09008 * 109.46876 * 210.00003 * 12 3 2 33 33 H 1.09001 * 109.47423 * 60.00106 * 13 12 3 34 34 H 1.08999 * 109.46885 * 299.99414 * 13 12 3 35 35 H 0.96999 * 120.00023 * 359.97438 * 14 13 12 36 36 H 1.09001 * 109.46938 * 59.99971 * 17 15 14 37 37 H 1.08995 * 109.47498 * 299.99774 * 17 15 14 38 38 H 1.08997 * 110.90365 * 338.63520 * 21 19 18 39 39 H 1.09002 * 110.91124 * 102.24212 * 21 19 18 40 40 H 1.09003 * 110.61416 * 278.51506 * 22 21 19 41 41 H 1.09003 * 110.61751 * 155.52191 * 22 21 19 42 42 H 1.08997 * 109.87736 * 267.09108 * 24 23 22 43 43 H 1.08999 * 110.00380 * 146.00947 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3677 1.9839 -1.1789 5 1 2.1498 3.0300 -1.3360 6 6 3.0018 1.2503 -2.1723 7 7 2.9452 1.6517 -3.4245 8 14 3.9355 -0.3065 -1.7318 9 1 3.0564 -1.4857 -1.9367 10 1 5.1349 -0.4265 -2.5991 11 1 4.3573 -0.2449 -0.3093 12 6 2.1331 2.1176 1.2613 13 6 3.5250 1.8959 1.8565 14 7 3.6395 2.6318 3.1181 15 6 4.7865 2.5841 3.8244 16 8 5.7235 1.9316 3.4158 17 6 4.9043 3.3416 5.1218 18 8 6.2044 3.1345 5.6778 19 6 6.4214 3.8126 6.9167 20 1 5.8465 4.7381 6.9499 21 6 7.9289 4.1004 7.1201 22 6 8.1161 3.7998 8.6291 23 8 7.2480 2.6690 8.8575 24 6 6.0473 2.9025 8.1026 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.3886 1.1393 -4.1185 31 1 1.3776 1.7599 1.9608 32 1 1.9823 3.1811 1.0760 33 1 4.2806 2.2536 1.1569 34 1 3.6758 0.8324 2.0417 35 1 2.8902 3.1540 3.4447 36 1 4.1491 2.9835 5.8215 37 1 4.7532 4.4050 4.9368 38 1 8.5380 3.4317 6.5119 39 1 8.1592 5.1427 6.8995 40 1 7.8029 4.6523 9.2319 41 1 9.1524 3.5375 8.8425 42 1 5.3055 3.3970 8.7297 43 1 5.6493 1.9573 7.7333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691019838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:01 Heat of formation + Delta-G solvation = -100.590814 kcal Electronic energy + Delta-G solvation = -22688.919198 eV Core-core repulsion = 19156.433992 eV Total energy + Delta-G solvation = -3532.485206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.13907 -39.32590 -37.23884 -36.52727 -34.37737 -31.87699 -31.76593 -30.53084 -29.31809 -28.48772 -26.86564 -23.78528 -23.13732 -22.73933 -21.68527 -20.58685 -20.10849 -17.68300 -17.38345 -16.76717 -16.56853 -16.24463 -15.81416 -15.53609 -15.29672 -15.07897 -14.42341 -14.20098 -13.76318 -13.46631 -13.20117 -12.95765 -12.82237 -12.68716 -12.54598 -12.14138 -11.98269 -11.80873 -11.70854 -11.36652 -11.25429 -11.13335 -10.91209 -10.46643 -10.30478 -10.28344 -9.81458 -9.77927 -9.69262 -9.50424 -8.76954 -8.56376 -6.95099 -6.04127 -3.47023 2.73353 2.74516 3.31459 3.49551 3.52937 3.55966 3.77950 4.09840 4.45684 4.50217 4.53649 4.69530 4.74415 4.86067 4.93632 4.97968 5.04330 5.13317 5.29136 5.29298 5.32577 5.48353 5.65668 5.69864 5.75725 5.89605 6.11318 6.20921 6.28446 6.40761 6.44877 6.55891 6.59624 6.71898 6.77228 6.86196 7.01827 7.66963 8.00156 8.31440 8.39683 8.91722 9.65447 10.03947 11.10970 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.028992 B = 0.002887 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.549819 B = 9695.855734 C =10036.616692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 N -0.599 5.599 4 C -0.274 4.274 5 H 0.080 0.920 6 C 0.039 3.961 7 N -0.897 5.897 8 Si 0.874 3.126 9 H -0.286 1.286 10 H -0.300 1.300 11 H -0.265 1.265 12 C 0.143 3.857 13 C 0.094 3.906 14 N -0.723 5.723 15 C 0.506 3.494 16 O -0.520 6.520 17 C 0.041 3.959 18 O -0.346 6.346 19 C 0.053 3.947 20 H 0.079 0.921 21 C -0.153 4.153 22 C 0.047 3.953 23 O -0.373 6.373 24 C 0.023 3.977 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.396 0.604 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 6.386 23.201 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 N -0.321 5.321 4 C -0.402 4.402 5 H 0.098 0.902 6 C -0.162 4.162 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.214 1.214 10 H -0.228 1.228 11 H -0.190 1.190 12 C 0.015 3.985 13 C -0.031 4.031 14 N -0.377 5.377 15 C 0.290 3.710 16 O -0.395 6.395 17 C -0.039 4.039 18 O -0.264 6.264 19 C -0.006 4.006 20 H 0.097 0.903 21 C -0.191 4.191 22 C -0.030 4.030 23 O -0.292 6.292 24 C -0.054 4.054 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.230 0.770 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.172 5.574 22.724 23.611 hybrid contribution -0.039 -0.286 0.205 0.354 sum 3.133 5.288 22.928 23.738 Atomic orbital electron populations 1.22225 0.98786 0.99534 1.01622 1.21168 0.92723 0.86385 0.99328 1.44099 1.74217 1.11510 1.02302 1.18767 1.34087 0.97272 0.90086 0.90219 1.25482 0.97353 0.98105 0.95284 1.69863 1.43757 1.40711 0.99376 0.86980 0.79930 0.83621 0.79076 1.21369 1.22755 1.18964 1.21061 0.91880 0.97327 0.88183 1.22471 1.02170 0.95741 0.82766 1.46021 1.14996 1.52030 1.24613 1.20164 0.83287 0.82228 0.85331 1.90755 1.37884 1.41125 1.69750 1.22350 0.86906 1.00190 0.94450 1.88147 1.30752 1.71394 1.36086 1.23617 0.97448 0.94816 0.84683 0.90261 1.23229 0.94986 1.03451 0.97395 1.23561 0.95905 0.89382 0.94120 1.88913 1.28446 1.42382 1.69427 1.23770 0.88250 1.01241 0.92142 0.93865 0.92169 0.94157 0.92322 0.94703 0.92591 0.93666 0.92375 0.90901 0.92400 0.77034 0.90359 0.90120 0.88712 0.89321 0.91925 0.88422 0.91752 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 10.23 37.16 0.38 -2.57 16 2 C 0.13 2.74 5.01 -4.04 -0.02 2.72 16 3 N -0.60 -13.63 2.08 -173.23 -0.36 -13.99 16 4 C -0.27 -7.43 9.91 -15.06 -0.15 -7.58 16 5 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 6 C 0.04 1.12 5.26 -17.43 -0.09 1.03 16 7 N -0.90 -27.15 13.97 55.49 0.78 -26.37 16 8 Si 0.87 22.47 25.05 -169.99 -4.26 18.21 16 9 H -0.29 -7.10 6.69 56.52 0.38 -6.72 16 10 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.14 2.58 5.80 -4.04 -0.02 2.56 16 13 C 0.09 1.72 6.00 -4.04 -0.02 1.70 16 14 N -0.72 -10.03 5.56 -60.29 -0.33 -10.37 16 15 C 0.51 7.76 7.91 -10.98 -0.09 7.67 16 16 O -0.52 -10.95 16.50 -14.35 -0.24 -11.18 16 17 C 0.04 0.43 6.28 36.01 0.23 0.65 16 18 O -0.35 -4.37 9.49 -55.14 -0.52 -4.90 16 19 C 0.05 0.46 3.51 -25.20 -0.09 0.38 16 20 H 0.08 0.48 7.86 -51.92 -0.41 0.07 16 21 C -0.15 -1.22 6.90 -24.72 -0.17 -1.40 16 22 C 0.05 0.34 7.72 38.21 0.29 0.64 16 23 O -0.37 -3.97 11.52 -35.23 -0.41 -4.38 16 24 C 0.02 0.21 7.52 37.73 0.28 0.49 16 25 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.39 3.60 -51.93 -0.19 1.20 16 29 H 0.03 0.68 8.12 -51.93 -0.42 0.25 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.04 0.70 8.05 -51.93 -0.42 0.28 16 32 H 0.06 1.02 8.04 -51.92 -0.42 0.60 16 33 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.40 3.84 8.47 -40.82 -0.35 3.49 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.92 7.97 -51.93 -0.41 0.51 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -35.42 353.18 -6.75 -42.18 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.26 Total: -0.80 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 0.53 Total: 6.28 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.08 Total: -50.73 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.17 Total: -20.46 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.26 Total: 18.21 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.42 -6.75 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691019838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.415 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds