Wall clock time and date at job start Tue Mar 31 2020 02:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47330 * 2 1 4 4 C 1.36933 * 120.00116 * 263.78500 * 3 2 1 5 5 H 1.08007 * 120.00477 * 142.60918 * 4 3 2 6 6 C 1.38815 * 120.00026 * 322.61870 * 4 3 2 7 7 N 1.31621 * 120.00234 * 157.38674 * 6 4 3 8 8 Si 1.86800 * 119.99805 * 337.38349 * 6 4 3 9 9 H 1.48502 * 109.47085 * 95.71606 * 8 6 4 10 10 H 1.48503 * 109.47237 * 215.71701 * 8 6 4 11 11 H 1.48495 * 109.47006 * 335.71772 * 8 6 4 12 12 C 1.46503 * 119.99990 * 83.78494 * 3 2 1 13 13 C 1.52997 * 109.47047 * 90.00321 * 12 3 2 14 14 N 1.46503 * 109.47047 * 180.02562 * 13 12 3 15 15 C 1.34782 * 119.99861 * 180.02562 * 14 13 12 16 16 O 1.21276 * 120.00118 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99496 * 179.97438 * 15 14 13 18 18 O 1.42905 * 109.46727 * 179.97438 * 17 15 14 19 19 C 1.42897 * 113.99869 * 180.02562 * 18 17 15 20 20 H 1.09009 * 110.43576 * 328.90966 * 19 18 17 21 21 C 1.54813 * 110.48716 * 206.22651 * 19 18 17 22 22 C 1.54998 * 102.08950 * 220.44295 * 21 19 18 23 23 O 1.44378 * 103.49134 * 37.02111 * 22 21 19 24 24 C 1.43747 * 106.97603 * 319.93794 * 23 22 21 25 25 H 1.09003 * 109.46894 * 300.00322 * 1 2 3 26 26 H 1.08998 * 109.46549 * 60.00091 * 1 2 3 27 27 H 1.08994 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47372 * 239.99693 * 2 1 3 29 29 H 1.09004 * 109.46850 * 119.99567 * 2 1 3 30 30 H 0.96997 * 119.99954 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47153 * 329.99621 * 12 3 2 32 32 H 1.09008 * 109.46876 * 210.00003 * 12 3 2 33 33 H 1.09001 * 109.47423 * 60.00106 * 13 12 3 34 34 H 1.08999 * 109.46885 * 299.99414 * 13 12 3 35 35 H 0.96999 * 120.00023 * 359.97438 * 14 13 12 36 36 H 1.09001 * 109.46938 * 59.99971 * 17 15 14 37 37 H 1.08995 * 109.47498 * 299.99774 * 17 15 14 38 38 H 1.08997 * 110.90365 * 338.63520 * 21 19 18 39 39 H 1.09002 * 110.91124 * 102.24212 * 21 19 18 40 40 H 1.09003 * 110.61416 * 278.51506 * 22 21 19 41 41 H 1.09003 * 110.61751 * 155.52191 * 22 21 19 42 42 H 1.08997 * 109.87736 * 267.09108 * 24 23 22 43 43 H 1.08999 * 110.00380 * 146.00947 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3677 1.9839 -1.1789 5 1 2.1498 3.0300 -1.3360 6 6 3.0018 1.2503 -2.1723 7 7 2.9452 1.6517 -3.4245 8 14 3.9355 -0.3065 -1.7318 9 1 3.0564 -1.4857 -1.9367 10 1 5.1349 -0.4265 -2.5991 11 1 4.3573 -0.2449 -0.3093 12 6 2.1331 2.1176 1.2613 13 6 3.5250 1.8959 1.8565 14 7 3.6395 2.6318 3.1181 15 6 4.7865 2.5841 3.8244 16 8 5.7235 1.9316 3.4158 17 6 4.9043 3.3416 5.1218 18 8 6.2044 3.1345 5.6778 19 6 6.4214 3.8126 6.9167 20 1 5.8465 4.7381 6.9499 21 6 7.9289 4.1004 7.1201 22 6 8.1161 3.7998 8.6291 23 8 7.2480 2.6690 8.8575 24 6 6.0473 2.9025 8.1026 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.3886 1.1393 -4.1185 31 1 1.3776 1.7599 1.9608 32 1 1.9823 3.1811 1.0760 33 1 4.2806 2.2536 1.1569 34 1 3.6758 0.8324 2.0417 35 1 2.8902 3.1540 3.4447 36 1 4.1491 2.9835 5.8215 37 1 4.7532 4.4050 4.9368 38 1 8.5380 3.4317 6.5119 39 1 8.1592 5.1427 6.8995 40 1 7.8029 4.6523 9.2319 41 1 9.1524 3.5375 8.8425 42 1 5.3055 3.3970 8.7297 43 1 5.6493 1.9573 7.7333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691019838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:00 Heat of formation + Delta-G solvation = -127.992115 kcal Electronic energy + Delta-G solvation = -22690.107407 eV Core-core repulsion = 19156.433992 eV Total energy + Delta-G solvation = -3533.673416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01388 -40.34280 -38.42700 -37.88237 -35.83314 -33.88567 -32.55010 -31.93106 -30.27940 -29.60643 -28.13072 -25.57236 -24.35770 -23.68197 -22.32200 -22.04372 -21.58564 -18.78555 -18.41485 -18.30479 -17.49502 -17.24572 -17.15239 -16.80431 -16.54610 -15.96940 -15.69239 -15.56752 -15.13401 -15.00057 -14.70714 -14.33827 -13.88976 -13.87665 -13.54586 -13.51440 -13.16850 -13.06981 -12.80967 -12.75527 -12.65034 -12.39343 -12.35442 -11.91478 -11.72871 -11.71423 -11.42119 -10.97014 -10.94201 -10.67170 -10.47835 -10.12175 -8.86145 -8.24345 -5.61318 1.24243 1.38958 1.47739 1.56786 1.76849 2.37014 2.83676 2.99244 3.03425 3.41519 3.50691 3.79727 3.88015 4.02897 4.17259 4.18618 4.20832 4.24457 4.30285 4.32602 4.37796 4.56803 4.63530 4.67509 4.73586 4.74295 4.79901 4.89547 4.95970 5.04299 5.08607 5.13402 5.20357 5.42769 5.51344 5.81644 5.92434 6.09099 6.15417 6.59598 6.95655 7.27185 7.59711 8.00463 8.95295 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.028992 B = 0.002887 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.549819 B = 9695.855734 C =10036.616692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.119 3.881 3 N -0.613 5.613 4 C -0.252 4.252 5 H 0.052 0.948 6 C -0.015 4.015 7 N -0.944 5.944 8 Si 0.930 3.070 9 H -0.271 1.271 10 H -0.313 1.313 11 H -0.268 1.268 12 C 0.147 3.853 13 C 0.109 3.891 14 N -0.704 5.704 15 C 0.499 3.501 16 O -0.588 6.588 17 C 0.049 3.951 18 O -0.387 6.387 19 C 0.050 3.950 20 H 0.116 0.884 21 C -0.156 4.156 22 C 0.046 3.954 23 O -0.406 6.406 24 C 0.020 3.980 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.057 0.943 30 H 0.262 0.738 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.038 0.962 35 H 0.422 0.578 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 7.259 26.540 27.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.005 4.005 3 N -0.336 5.336 4 C -0.382 4.382 5 H 0.070 0.930 6 C -0.212 4.212 7 N -0.588 5.588 8 Si 0.759 3.241 9 H -0.198 1.198 10 H -0.242 1.242 11 H -0.192 1.192 12 C 0.021 3.979 13 C -0.018 4.018 14 N -0.359 5.359 15 C 0.286 3.714 16 O -0.467 6.467 17 C -0.030 4.030 18 O -0.306 6.306 19 C -0.008 4.008 20 H 0.134 0.866 21 C -0.194 4.194 22 C -0.030 4.030 23 O -0.326 6.326 24 C -0.056 4.056 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.260 0.740 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.528 6.467 26.133 26.964 hybrid contribution 0.424 -0.479 -0.724 0.966 sum 1.951 5.988 25.409 26.178 Atomic orbital electron populations 1.22089 0.96102 1.01290 1.01577 1.21297 0.94896 0.85264 0.99051 1.44248 1.74501 1.12294 1.02589 1.18709 1.31835 0.96099 0.91545 0.93036 1.25992 0.98882 1.01022 0.95275 1.69965 1.45945 1.42615 1.00312 0.86076 0.78400 0.81562 0.78020 1.19792 1.24177 1.19241 1.21173 0.92492 0.97393 0.86887 1.21956 1.00979 0.94914 0.83975 1.45702 1.15927 1.51442 1.22860 1.21209 0.82164 0.81345 0.86681 1.90729 1.40186 1.44145 1.71683 1.22439 0.87240 1.01340 0.91975 1.88109 1.31986 1.72667 1.37836 1.23875 0.98103 0.95798 0.83006 0.86602 1.23277 0.94545 1.04100 0.97451 1.23745 0.95946 0.89370 0.93940 1.88870 1.29593 1.44201 1.69889 1.23873 0.88286 1.00854 0.92633 0.91403 0.94637 0.91564 0.95060 0.92459 0.92856 0.89485 0.91644 0.95252 0.94305 0.74038 0.86528 0.86344 0.91651 0.87036 0.89313 0.87951 0.88897 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 10.23 71.98 0.74 -4.31 16 2 C 0.12 4.82 5.01 86.38 0.43 5.26 16 3 N -0.61 -27.23 2.08 -701.98 -1.46 -28.69 16 4 C -0.25 -13.87 9.91 84.03 0.83 -13.03 16 5 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 6 C -0.01 -0.87 5.26 84.86 0.45 -0.42 16 7 N -0.94 -59.09 13.97 21.65 0.30 -58.78 16 8 Si 0.93 47.74 25.05 68.60 1.72 49.46 16 9 H -0.27 -13.09 6.69 99.48 0.67 -12.43 16 10 H -0.31 -16.55 7.11 99.48 0.71 -15.85 16 11 H -0.27 -13.66 7.11 99.48 0.71 -12.96 16 12 C 0.15 4.95 5.80 86.38 0.50 5.45 16 13 C 0.11 3.90 6.00 86.38 0.52 4.42 16 14 N -0.70 -17.94 5.56 -463.06 -2.57 -20.51 16 15 C 0.50 14.60 7.91 87.66 0.69 15.29 16 16 O -0.59 -25.22 16.50 16.02 0.26 -24.96 16 17 C 0.05 0.85 6.28 71.24 0.45 1.29 16 18 O -0.39 -9.11 9.49 -129.94 -1.23 -10.35 16 19 C 0.05 0.73 3.51 31.58 0.11 0.84 16 20 H 0.12 0.83 7.86 -2.38 -0.02 0.81 16 21 C -0.16 -2.25 6.90 31.90 0.22 -2.03 16 22 C 0.05 0.58 7.72 72.67 0.56 1.15 16 23 O -0.41 -8.12 11.52 -148.98 -1.72 -9.84 16 24 C 0.02 0.32 7.52 72.35 0.54 0.86 16 25 H 0.07 1.91 8.12 -2.39 -0.02 1.90 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.03 1.44 3.60 -2.39 -0.01 1.43 16 29 H 0.06 2.06 8.12 -2.39 -0.02 2.04 16 30 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.09 2.27 8.05 -2.39 -0.02 2.25 16 32 H 0.07 2.13 8.04 -2.38 -0.02 2.11 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.42 6.44 8.47 -92.71 -0.79 5.66 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.12 1.18 8.10 -2.39 -0.02 1.16 16 38 H 0.06 1.32 8.09 -2.39 -0.02 1.30 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.02 16 40 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 1.41 7.97 -2.39 -0.02 1.39 16 Total: -1.00 -82.89 353.18 1.51 -81.38 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.16 Total: 7.53 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 6.04 Total: 14.76 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -3.73 Total: -107.98 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -2.69 Total: -45.15 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.72 Total: 49.46 kcal Total: -82.89 1.51 -81.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691019838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.613 kcal (2) G-P(sol) polarization free energy of solvation -82.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds