Wall clock time and date at job start Tue Mar 31 2020 03:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 113.99983 * 2 1 4 4 C 1.50702 * 109.46909 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00155 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00010 * 179.97438 * 4 3 2 7 7 C 1.46922 * 120.63160 * 179.97438 * 6 4 3 8 8 C 1.53190 * 108.89344 * 233.56012 * 7 6 4 9 9 C 1.53071 * 109.29527 * 305.57789 * 8 7 6 10 10 N 1.46503 * 109.44210 * 181.23594 * 9 8 7 11 11 C 1.36943 * 120.00103 * 299.79900 * 10 9 8 12 12 H 1.08000 * 119.99725 * 326.29403 * 11 10 9 13 13 C 1.38812 * 120.00087 * 146.29033 * 11 10 9 14 14 N 1.31621 * 119.99915 * 337.23473 * 13 11 10 15 15 Si 1.86798 * 119.99880 * 157.22757 * 13 11 10 16 16 H 1.48496 * 109.46907 * 90.00269 * 15 13 11 17 17 H 1.48501 * 109.47393 * 210.00363 * 15 13 11 18 18 H 1.48500 * 109.46992 * 330.00393 * 15 13 11 19 19 C 1.46498 * 120.00127 * 119.79363 * 10 9 8 20 20 C 1.53007 * 109.46814 * 84.42030 * 19 10 9 21 21 O 1.42894 * 109.47383 * 64.99689 * 20 19 10 22 22 C 1.53042 * 109.65882 * 61.15647 * 9 8 7 23 23 C 1.46922 * 120.62786 * 0.02562 * 6 4 3 24 24 H 1.09007 * 109.47191 * 60.00040 * 1 2 3 25 25 H 1.09005 * 109.47464 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47525 * 300.00547 * 1 2 3 27 27 H 1.09000 * 109.47041 * 59.99825 * 3 2 1 28 28 H 1.09000 * 109.46792 * 299.99607 * 3 2 1 29 29 H 1.08994 * 109.58677 * 353.42376 * 7 6 4 30 30 H 1.09001 * 109.58447 * 113.70638 * 7 6 4 31 31 H 1.08999 * 109.49638 * 65.38995 * 8 7 6 32 32 H 1.09006 * 109.49456 * 185.48780 * 8 7 6 33 33 H 1.08997 * 109.34875 * 301.12824 * 9 8 7 34 34 H 0.96999 * 119.99318 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.47372 * 204.41636 * 19 10 9 36 36 H 1.08999 * 109.47211 * 324.42322 * 19 10 9 37 37 H 1.08994 * 109.46980 * 185.00350 * 20 19 10 38 38 H 1.09001 * 109.46772 * 304.99606 * 20 19 10 39 39 H 0.96697 * 114.00094 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.50004 * 178.74175 * 22 9 8 41 41 H 1.09007 * 109.52578 * 58.66179 * 22 9 8 42 42 H 1.09000 * 109.58871 * 246.15548 * 23 6 4 43 43 H 1.08998 * 109.59033 * 6.44097 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2968 0.0002 7 6 5.7423 2.1968 0.0014 8 6 6.2949 3.0230 1.1671 9 6 5.7595 4.4539 1.0714 10 7 6.3094 5.2546 2.1681 11 6 6.0622 4.8983 3.4670 12 1 5.1189 4.4441 3.7321 13 6 7.0241 5.1206 4.4428 14 7 8.2903 5.2397 4.1038 15 14 6.5214 5.2510 6.2372 16 1 6.5577 3.9037 6.8605 17 1 7.4619 6.1520 6.9506 18 1 5.1449 5.8010 6.3269 19 6 7.1240 6.4366 1.8752 20 6 6.2093 7.6392 1.6341 21 8 5.5073 7.9528 2.8385 22 6 4.2321 4.4396 1.1668 23 6 3.6592 3.6300 -0.0003 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 6.0374 1.1544 0.1201 30 1 6.1356 2.5831 -0.9389 31 1 5.9762 2.5797 2.1104 32 1 7.3838 3.0357 1.1199 33 1 6.0598 4.8888 0.1182 34 1 8.9623 5.3955 4.7857 35 1 7.7810 6.6435 2.7198 36 1 7.7244 6.2524 0.9843 37 1 6.8093 8.4966 1.3294 38 1 5.4932 7.3992 0.8481 39 1 4.9077 8.7073 2.7592 40 1 3.8551 5.4613 1.1208 41 1 3.9302 3.9824 2.1092 42 1 3.8824 4.1357 -0.9397 43 1 2.5797 3.5330 0.1149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691823447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:21 Heat of formation + Delta-G solvation = -123.878863 kcal Electronic energy + Delta-G solvation = -24155.264437 eV Core-core repulsion = 20621.769385 eV Total energy + Delta-G solvation = -3533.495052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24961 -39.27001 -38.33012 -37.56164 -36.21441 -33.83967 -32.46450 -31.85088 -29.88575 -29.17507 -26.98296 -26.24349 -24.73188 -23.90825 -22.33862 -21.54429 -20.14763 -18.65078 -18.15679 -17.94301 -17.46291 -17.22443 -16.83063 -16.47023 -16.05445 -15.73760 -15.58513 -15.38269 -14.95151 -14.66185 -14.42271 -14.12184 -13.87193 -13.70128 -13.34109 -13.16814 -13.03079 -12.97356 -12.72349 -12.53439 -12.36413 -12.31804 -12.08117 -11.81886 -11.61052 -11.48376 -11.11041 -10.78287 -10.74752 -10.58093 -10.35014 -9.64902 -8.47269 -7.73629 -5.24444 1.43745 1.47279 1.53763 1.55831 1.79492 2.57879 2.98881 3.37354 3.54481 3.61453 3.87299 3.95925 4.15148 4.18463 4.25462 4.25844 4.38370 4.47679 4.53179 4.59537 4.61691 4.64280 4.73128 4.80804 4.84640 4.88299 4.91550 4.96462 5.12693 5.14373 5.23515 5.45936 5.61829 5.66256 5.77545 5.89436 6.07638 6.43154 6.55235 7.14070 7.25106 7.31519 8.01712 8.47072 9.24568 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.004580 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.136282 B = 6111.478419 C = 6432.852113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.049 3.951 4 C 0.504 3.496 5 O -0.583 6.583 6 N -0.603 5.603 7 C 0.123 3.877 8 C -0.123 4.123 9 C 0.171 3.829 10 N -0.585 5.585 11 C -0.216 4.216 12 H 0.046 0.954 13 C -0.038 4.038 14 N -0.922 5.922 15 Si 0.940 3.060 16 H -0.294 1.294 17 H -0.297 1.297 18 H -0.277 1.277 19 C 0.134 3.866 20 C 0.070 3.930 21 O -0.577 6.577 22 C -0.130 4.130 23 C 0.112 3.888 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.030 0.970 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.244 0.756 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.374 0.626 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.099 0.901 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.535 1.641 -12.836 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C -0.030 4.030 4 C 0.293 3.707 5 O -0.463 6.463 6 N -0.337 5.337 7 C 0.000 4.000 8 C -0.163 4.163 9 C 0.064 3.936 10 N -0.304 5.304 11 C -0.347 4.347 12 H 0.063 0.937 13 C -0.234 4.234 14 N -0.569 5.569 15 Si 0.771 3.229 16 H -0.222 1.222 17 H -0.223 1.223 18 H -0.202 1.202 19 C 0.007 3.993 20 C -0.010 4.010 21 O -0.382 6.382 22 C -0.170 4.170 23 C -0.010 4.010 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.135 0.865 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.221 0.779 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.117 0.883 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.674 0.428 -12.520 18.545 hybrid contribution -0.001 0.671 1.367 1.522 sum -13.676 1.099 -11.153 17.681 Atomic orbital electron populations 1.23048 0.78215 1.04183 1.01709 1.87964 1.22263 1.26748 1.95776 1.22398 0.88878 0.86706 1.05019 1.21013 0.90447 0.83606 0.75586 1.90670 1.75772 1.28326 1.51551 1.48194 1.06706 1.06730 1.72068 1.21531 0.79149 1.00457 0.98887 1.22146 0.99526 0.97792 0.96814 1.20561 0.92625 0.89433 0.90964 1.43951 1.59515 1.25678 1.01266 1.18799 0.96063 1.34965 0.84900 0.93671 1.25426 0.94679 1.02756 1.00518 1.70089 0.99800 1.54367 1.32639 0.85696 0.77520 0.76674 0.83000 1.22200 1.22339 1.20225 1.21026 0.93043 0.85360 0.99839 1.22859 0.94769 0.97277 0.86064 1.86779 1.61392 1.53962 1.36025 1.22190 0.96857 1.00267 0.97689 1.22051 0.98680 0.80683 0.99566 0.91719 0.88702 0.92591 0.88250 0.86533 0.91630 0.89204 0.95132 0.93144 0.91106 0.94684 0.91640 0.93708 0.93913 0.93618 0.77926 0.90209 0.94252 0.88281 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.60 16 2 O -0.41 -10.51 10.24 -129.94 -1.33 -11.84 16 3 C 0.05 1.03 4.76 71.24 0.34 1.37 16 4 C 0.50 15.54 7.78 87.66 0.68 16.22 16 5 O -0.58 -24.01 15.91 16.00 0.25 -23.76 16 6 N -0.60 -16.74 2.97 -819.01 -2.44 -19.17 16 7 C 0.12 3.85 6.43 86.36 0.56 4.41 16 8 C -0.12 -4.73 5.32 30.68 0.16 -4.56 16 9 C 0.17 6.16 2.59 45.03 0.12 6.28 16 10 N -0.58 -26.73 2.35 -677.82 -1.59 -28.32 16 11 C -0.22 -11.53 8.06 84.03 0.68 -10.85 16 12 H 0.05 2.48 6.87 -2.91 -0.02 2.46 16 13 C -0.04 -2.16 4.90 84.86 0.42 -1.74 16 14 N -0.92 -54.43 11.36 21.65 0.25 -54.19 16 15 Si 0.94 46.85 29.61 68.60 2.03 48.88 16 16 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 17 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 18 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 19 C 0.13 5.89 5.57 86.38 0.48 6.37 16 20 C 0.07 2.43 7.39 71.98 0.53 2.96 16 21 O -0.58 -22.07 13.40 -148.98 -2.00 -24.07 16 22 C -0.13 -3.84 5.31 30.66 0.16 -3.68 16 23 C 0.11 2.29 6.34 86.35 0.55 2.83 16 24 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.10 1.71 7.70 -2.39 -0.02 1.69 16 28 H 0.12 1.53 7.94 -2.39 -0.02 1.51 16 29 H 0.07 2.33 7.00 -2.39 -0.02 2.32 16 30 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.03 1.39 7.70 -2.39 -0.02 1.38 16 32 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.07 2.24 7.87 -2.39 -0.02 2.22 16 34 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.07 3.52 5.35 -2.39 -0.01 3.51 16 36 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.37 9.77 9.12 -74.06 -0.68 9.10 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.04 1.40 7.03 -2.38 -0.02 1.39 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.11 1.51 5.93 -2.39 -0.01 1.50 16 Total: -1.00 -78.00 344.76 1.43 -76.58 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.33 Total: 14.68 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 5.92 Total: 21.21 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -3.78 Total: -101.68 kcal Atomic # 8 Polarization: -56.60 SS G_CDS: -3.07 Total: -59.67 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -78.00 1.43 -76.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691823447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.302 kcal (2) G-P(sol) polarization free energy of solvation -78.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds