Wall clock time and date at job start Tue Mar 31 2020 02:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47109 * 2 1 4 4 C 1.42902 * 114.00175 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47213 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47167 * 64.99859 * 5 4 3 7 7 C 1.42902 * 113.99740 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.46686 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00490 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99677 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99823 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46877 * 180.02562 * 11 10 8 13 13 C 1.53950 * 113.74237 * 86.25986 * 12 11 10 14 14 N 1.47805 * 86.03824 * 90.88049 * 13 12 11 15 15 C 1.36942 * 134.45487 * 204.64668 * 14 13 12 16 16 H 1.08002 * 119.99602 * 179.86453 * 15 14 13 17 17 C 1.38807 * 120.00184 * 359.86555 * 15 14 13 18 18 N 1.31617 * 119.99858 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00250 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47116 * 59.99643 * 19 17 15 21 21 H 1.48494 * 109.47098 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46650 * 300.00031 * 19 17 15 23 23 C 1.47582 * 91.05413 * 24.54887 * 14 13 12 24 24 H 1.09004 * 109.47346 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47377 * 300.00618 * 1 2 3 26 26 H 1.09007 * 109.47114 * 60.00235 * 1 2 3 27 27 H 1.09000 * 109.47126 * 240.00123 * 2 1 3 28 28 H 1.08997 * 109.47111 * 119.99954 * 2 1 3 29 29 H 1.09000 * 109.46886 * 59.99325 * 4 3 2 30 30 H 1.09004 * 109.46723 * 299.99875 * 4 3 2 31 31 H 1.08997 * 109.47002 * 304.99655 * 5 4 3 32 32 H 1.09003 * 109.46700 * 184.99912 * 5 4 3 33 33 H 1.09002 * 109.47081 * 60.00442 * 7 6 5 34 34 H 1.08997 * 109.47490 * 300.00123 * 7 6 5 35 35 H 0.97000 * 120.00410 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47568 * 60.00247 * 11 10 8 37 37 H 1.08998 * 109.47248 * 299.99470 * 11 10 8 38 38 H 1.09002 * 112.94408 * 314.66403 * 12 11 10 39 39 H 1.08999 * 113.76704 * 205.14826 * 13 12 11 40 40 H 1.09002 * 113.76463 * 336.53620 * 13 12 11 41 41 H 0.97002 * 120.00155 * 180.02562 * 18 17 15 42 42 H 1.08999 * 113.77186 * 221.15323 * 23 14 13 43 43 H 1.09004 * 113.76624 * 89.74800 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 8 3.3975 3.5461 1.2203 7 6 3.7192 4.9348 1.3221 8 6 3.2236 5.4698 2.6409 9 8 2.6517 4.7344 3.4174 10 7 3.4159 6.7657 2.9575 11 6 2.9346 7.2857 4.2397 12 6 3.2778 8.7728 4.3481 13 6 2.2249 9.6998 3.7140 14 7 1.5936 9.7271 5.0501 15 6 0.3231 9.9577 5.5060 16 1 0.1134 9.9162 6.5647 17 6 -0.6953 10.2448 4.6076 18 7 -0.4399 10.2948 3.3174 19 14 -2.4283 10.5600 5.2295 20 1 -2.4201 11.7273 6.1474 21 1 -3.3235 10.8421 4.0788 22 1 -2.9187 9.3618 5.9568 23 6 2.8811 9.4039 5.6951 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9764 -0.8891 30 1 3.8332 0.9767 0.8909 31 1 3.3500 3.4409 -0.8425 32 1 4.9083 3.0253 -0.0892 33 1 3.2418 5.4790 0.5072 34 1 4.7999 5.0629 1.2606 35 1 3.8730 7.3540 2.3363 36 1 3.4123 6.7419 5.0547 37 1 1.8540 7.1573 4.3013 38 1 4.3001 8.9963 4.0429 39 1 2.6225 10.6636 3.3961 40 1 1.6172 9.2159 2.9494 41 1 -1.1514 10.4958 2.6895 42 1 2.7962 8.6843 6.5093 43 1 3.4719 10.2807 5.9603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692352219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:14 Heat of formation + Delta-G solvation = -74.204416 kcal Electronic energy + Delta-G solvation = -22357.932525 eV Core-core repulsion = 18826.591519 eV Total energy + Delta-G solvation = -3531.341006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.59421 -38.54842 -37.98048 -37.06828 -34.13973 -32.15569 -32.04002 -29.95868 -28.82910 -27.35239 -25.25984 -24.74727 -22.97304 -22.76950 -22.24479 -20.36637 -18.72592 -17.34971 -17.10317 -16.84777 -16.68182 -16.08338 -15.95713 -15.29576 -15.00970 -14.87056 -14.54329 -13.97239 -13.74382 -13.59596 -13.28851 -12.84257 -12.60532 -12.48486 -12.42140 -12.01500 -11.67400 -11.46758 -11.41986 -11.14944 -11.07709 -10.96289 -10.67027 -10.48842 -9.89484 -9.84896 -9.79019 -9.73640 -9.51356 -9.37157 -8.75215 -8.64606 -6.83734 -5.72002 -3.03878 2.88011 2.95672 3.44490 3.45248 3.48546 3.49479 3.98672 4.50925 4.71271 4.83397 4.89236 4.92603 5.01767 5.05769 5.12724 5.15773 5.17546 5.21410 5.24258 5.37926 5.40695 5.44782 5.55706 5.64238 5.73347 5.97021 6.01299 6.17420 6.35948 6.54594 6.66195 6.70422 6.79900 6.92813 7.05256 7.21668 7.34191 7.60022 7.80900 8.02976 8.52494 9.09476 9.76078 10.64286 11.45136 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.003061 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.732972 B = 9146.009190 C =10363.527562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.379 6.379 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.354 6.354 7 C 0.045 3.955 8 C 0.510 3.490 9 O -0.522 6.522 10 N -0.722 5.722 11 C 0.150 3.850 12 C -0.155 4.155 13 C 0.166 3.834 14 N -0.611 5.611 15 C -0.223 4.223 16 H 0.079 0.921 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.127 3.873 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.398 0.602 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.253 0.747 42 H 0.046 0.954 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.549 -15.667 -9.974 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.298 6.298 4 C -0.011 4.011 5 C -0.015 4.015 6 O -0.272 6.272 7 C -0.036 4.036 8 C 0.294 3.706 9 O -0.397 6.397 10 N -0.374 5.374 11 C 0.028 3.972 12 C -0.175 4.175 13 C 0.040 3.960 14 N -0.338 5.338 15 C -0.351 4.351 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.741 3.259 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.000 4.000 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.232 0.768 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.539 -16.089 -9.280 21.867 hybrid contribution -0.353 0.660 -0.278 0.798 sum 11.187 -15.429 -9.558 21.320 Atomic orbital electron populations 1.21745 0.93656 1.02075 1.03523 1.22451 0.95864 0.83853 0.99731 1.88014 1.20291 1.26169 1.95328 1.22476 0.82511 0.95389 1.00744 1.22579 0.98238 0.92886 0.87847 1.88099 1.80730 1.20887 1.37473 1.22219 1.00195 0.84387 0.96754 1.20116 0.80172 0.82376 0.87909 1.90734 1.40639 1.57273 1.51011 1.45895 1.60326 1.09737 1.21492 1.21070 1.00864 0.92090 0.83216 1.23449 0.98852 0.94422 1.00749 1.22355 0.89036 0.93994 0.90595 1.46043 1.02262 1.82902 1.02636 1.18978 0.82698 1.41125 0.92272 0.90357 1.24757 0.98036 1.02182 0.95418 1.69791 1.31771 1.54984 1.00373 0.86215 0.84183 0.78106 0.77370 1.21281 1.21583 1.21018 1.22520 0.87891 0.95783 0.93769 0.91236 0.91446 0.91895 0.93728 0.93384 0.91885 0.92328 0.92172 0.91673 0.90166 0.90568 0.76835 0.92258 0.89944 0.91550 0.95600 0.90670 0.93685 0.93630 0.94554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.38 -4.78 10.31 -40.09 -0.41 -5.19 16 4 C 0.07 0.63 6.32 37.16 0.23 0.86 16 5 C 0.06 0.60 6.32 37.16 0.23 0.83 16 6 O -0.35 -5.09 9.84 -59.73 -0.59 -5.68 16 7 C 0.04 0.54 6.42 36.01 0.23 0.77 16 8 C 0.51 8.45 7.91 -10.98 -0.09 8.36 16 9 O -0.52 -11.35 16.50 -14.35 -0.24 -11.59 16 10 N -0.72 -10.88 5.56 -60.29 -0.33 -11.22 16 11 C 0.15 2.73 5.42 -4.04 -0.02 2.71 16 12 C -0.15 -2.77 3.99 -89.69 -0.36 -3.13 16 13 C 0.17 3.79 7.03 -2.84 -0.02 3.77 16 14 N -0.61 -15.74 3.59 -177.69 -0.64 -16.38 16 15 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 16 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 18 N -0.92 -27.66 11.39 55.49 0.63 -27.02 16 19 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.13 2.56 8.51 -2.96 -0.03 2.54 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 4.63 8.47 -40.82 -0.35 4.29 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.88 7.98 -51.93 -0.41 1.47 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 1.92 7.12 -51.93 -0.37 1.55 16 41 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.05 0.89 8.10 -51.93 -0.42 0.46 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -36.85 363.05 -8.01 -44.86 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.44 Total: -0.63 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 0.56 Total: 9.67 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.34 Total: -54.62 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -1.24 Total: -22.46 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.85 -8.01 -44.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692352219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.346 kcal (2) G-P(sol) polarization free energy of solvation -36.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds