Wall clock time and date at job start Tue Mar 31 2020 02:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47109 * 2 1 4 4 C 1.42902 * 114.00175 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47213 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47167 * 64.99859 * 5 4 3 7 7 C 1.42902 * 113.99740 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.46686 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00490 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99677 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99823 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46877 * 180.02562 * 11 10 8 13 13 C 1.53950 * 113.74237 * 86.25986 * 12 11 10 14 14 N 1.47805 * 86.03824 * 90.88049 * 13 12 11 15 15 C 1.36942 * 134.45487 * 204.64668 * 14 13 12 16 16 H 1.08002 * 119.99602 * 179.86453 * 15 14 13 17 17 C 1.38807 * 120.00184 * 359.86555 * 15 14 13 18 18 N 1.31617 * 119.99858 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00250 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47116 * 59.99643 * 19 17 15 21 21 H 1.48494 * 109.47098 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46650 * 300.00031 * 19 17 15 23 23 C 1.47582 * 91.05413 * 24.54887 * 14 13 12 24 24 H 1.09004 * 109.47346 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47377 * 300.00618 * 1 2 3 26 26 H 1.09007 * 109.47114 * 60.00235 * 1 2 3 27 27 H 1.09000 * 109.47126 * 240.00123 * 2 1 3 28 28 H 1.08997 * 109.47111 * 119.99954 * 2 1 3 29 29 H 1.09000 * 109.46886 * 59.99325 * 4 3 2 30 30 H 1.09004 * 109.46723 * 299.99875 * 4 3 2 31 31 H 1.08997 * 109.47002 * 304.99655 * 5 4 3 32 32 H 1.09003 * 109.46700 * 184.99912 * 5 4 3 33 33 H 1.09002 * 109.47081 * 60.00442 * 7 6 5 34 34 H 1.08997 * 109.47490 * 300.00123 * 7 6 5 35 35 H 0.97000 * 120.00410 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47568 * 60.00247 * 11 10 8 37 37 H 1.08998 * 109.47248 * 299.99470 * 11 10 8 38 38 H 1.09002 * 112.94408 * 314.66403 * 12 11 10 39 39 H 1.08999 * 113.76704 * 205.14826 * 13 12 11 40 40 H 1.09002 * 113.76463 * 336.53620 * 13 12 11 41 41 H 0.97002 * 120.00155 * 180.02562 * 18 17 15 42 42 H 1.08999 * 113.77186 * 221.15323 * 23 14 13 43 43 H 1.09004 * 113.76624 * 89.74800 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 8 3.3975 3.5461 1.2203 7 6 3.7192 4.9348 1.3221 8 6 3.2236 5.4698 2.6409 9 8 2.6517 4.7344 3.4174 10 7 3.4159 6.7657 2.9575 11 6 2.9346 7.2857 4.2397 12 6 3.2778 8.7728 4.3481 13 6 2.2249 9.6998 3.7140 14 7 1.5936 9.7271 5.0501 15 6 0.3231 9.9577 5.5060 16 1 0.1134 9.9162 6.5647 17 6 -0.6953 10.2448 4.6076 18 7 -0.4399 10.2948 3.3174 19 14 -2.4283 10.5600 5.2295 20 1 -2.4201 11.7273 6.1474 21 1 -3.3235 10.8421 4.0788 22 1 -2.9187 9.3618 5.9568 23 6 2.8811 9.4039 5.6951 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9764 -0.8891 30 1 3.8332 0.9767 0.8909 31 1 3.3500 3.4409 -0.8425 32 1 4.9083 3.0253 -0.0892 33 1 3.2418 5.4790 0.5072 34 1 4.7999 5.0629 1.2606 35 1 3.8730 7.3540 2.3363 36 1 3.4123 6.7419 5.0547 37 1 1.8540 7.1573 4.3013 38 1 4.3001 8.9963 4.0429 39 1 2.6225 10.6636 3.3961 40 1 1.6172 9.2159 2.9494 41 1 -1.1514 10.4958 2.6895 42 1 2.7962 8.6843 6.5093 43 1 3.4719 10.2807 5.9603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692352219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:13 Heat of formation + Delta-G solvation = -101.849491 kcal Electronic energy + Delta-G solvation = -22359.131306 eV Core-core repulsion = 18826.591519 eV Total energy + Delta-G solvation = -3532.539787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91327 -39.77042 -39.22285 -38.04937 -35.64904 -34.16680 -32.80875 -31.04925 -30.20369 -28.77083 -26.81777 -26.46302 -24.10422 -23.69104 -23.48426 -21.69828 -20.34806 -18.74892 -18.24288 -17.98932 -17.91082 -17.19424 -16.96337 -16.84404 -16.42218 -16.11151 -15.77449 -15.57520 -15.20825 -14.75866 -14.43192 -14.27238 -14.02778 -13.52045 -13.37642 -13.33120 -12.95110 -12.90086 -12.81448 -12.54698 -12.38355 -12.27247 -12.19719 -11.88162 -11.81232 -11.49187 -11.28579 -10.91044 -10.78511 -10.67555 -10.53825 -10.05768 -8.88197 -7.89765 -5.20986 1.42852 1.46632 1.52026 1.61372 1.87569 2.47865 2.77915 3.02240 3.31518 3.46251 3.70036 3.84369 3.99919 4.08932 4.14826 4.22274 4.27090 4.34465 4.36008 4.47388 4.51836 4.53191 4.54979 4.63060 4.75980 4.79083 4.88749 4.91209 5.01254 5.02645 5.10775 5.24161 5.26856 5.42536 5.57459 5.65825 5.98065 6.09120 6.33683 6.63358 6.94536 7.29702 7.63100 8.58800 9.26772 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.003061 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.732972 B = 9146.009190 C =10363.527562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 O -0.417 6.417 4 C 0.057 3.943 5 C 0.055 3.945 6 O -0.398 6.398 7 C 0.051 3.949 8 C 0.502 3.498 9 O -0.584 6.584 10 N -0.707 5.707 11 C 0.160 3.840 12 C -0.117 4.117 13 C 0.162 3.838 14 N -0.647 5.647 15 C -0.234 4.234 16 H 0.079 0.921 17 C -0.068 4.068 18 N -0.951 5.951 19 Si 0.973 3.027 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.282 1.282 23 C 0.124 3.876 24 H 0.093 0.907 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.419 0.581 36 H 0.068 0.932 37 H 0.027 0.973 38 H 0.119 0.881 39 H 0.026 0.974 40 H 0.040 0.960 41 H 0.247 0.753 42 H 0.052 0.948 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.871 -15.983 -10.790 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.337 6.337 4 C -0.019 4.019 5 C -0.020 4.020 6 O -0.317 6.317 7 C -0.028 4.028 8 C 0.289 3.711 9 O -0.464 6.464 10 N -0.361 5.361 11 C 0.036 3.964 12 C -0.137 4.137 13 C 0.037 3.963 14 N -0.375 5.375 15 C -0.363 4.363 16 H 0.097 0.903 17 C -0.261 4.261 18 N -0.600 5.600 19 Si 0.802 3.198 20 H -0.201 1.201 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.001 4.001 24 H 0.112 0.888 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.141 0.859 35 H 0.256 0.744 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.137 0.863 39 H 0.043 0.957 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.923 -16.383 -10.107 23.757 hybrid contribution -1.015 0.720 -0.008 1.245 sum 12.908 -15.662 -10.116 22.677 Atomic orbital electron populations 1.21787 0.93836 1.03262 1.02179 1.22623 0.95870 0.83032 1.00949 1.87969 1.22207 1.27937 1.95596 1.22737 0.81254 0.95853 1.02017 1.22889 1.00418 0.92523 0.86219 1.88048 1.81859 1.21931 1.39883 1.22299 1.02836 0.83776 0.93861 1.21101 0.78864 0.82053 0.89076 1.90704 1.43489 1.58845 1.53321 1.45717 1.59680 1.09893 1.20810 1.20738 0.97686 0.92799 0.85206 1.23134 0.99901 0.92592 0.98047 1.22312 0.90030 0.94824 0.89172 1.46464 1.03150 1.82991 1.04854 1.19360 0.84639 1.39775 0.92477 0.90315 1.25559 1.01725 1.03087 0.95753 1.69970 1.32295 1.56532 1.01222 0.85229 0.79740 0.78129 0.76739 1.20137 1.21930 1.20785 1.22778 0.85556 0.96819 0.94955 0.88819 0.93764 0.92188 0.91257 0.93264 0.88531 0.92940 0.91665 0.88029 0.88112 0.85879 0.74414 0.91396 0.95483 0.86281 0.95658 0.94126 0.94452 0.93002 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 10.28 71.98 0.74 -2.01 16 2 C 0.05 0.94 6.66 71.98 0.48 1.42 16 3 O -0.42 -10.41 10.31 -144.34 -1.49 -11.90 16 4 C 0.06 1.01 6.32 71.98 0.45 1.47 16 5 C 0.06 0.95 6.32 71.98 0.45 1.41 16 6 O -0.40 -11.01 9.84 -125.55 -1.24 -12.24 16 7 C 0.05 1.12 6.42 71.24 0.46 1.58 16 8 C 0.50 16.34 7.91 87.66 0.69 17.03 16 9 O -0.58 -26.19 16.50 16.02 0.26 -25.93 16 10 N -0.71 -20.33 5.56 -463.05 -2.57 -22.90 16 11 C 0.16 5.73 5.42 86.38 0.47 6.20 16 12 C -0.12 -3.94 3.99 -10.13 -0.04 -3.98 16 13 C 0.16 7.39 7.03 86.44 0.61 8.00 16 14 N -0.65 -33.46 3.59 -716.10 -2.57 -36.02 16 15 C -0.23 -13.58 10.70 84.03 0.90 -12.68 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 18 N -0.95 -58.68 11.39 21.65 0.25 -58.44 16 19 Si 0.97 47.69 29.55 68.60 2.03 49.71 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 22 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 23 C 0.12 4.78 8.51 86.49 0.74 5.52 16 24 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.42 8.52 8.47 -92.71 -0.79 7.73 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.03 1.28 7.98 -2.39 -0.02 1.26 16 38 H 0.12 2.87 8.14 -2.39 -0.02 2.86 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.04 2.13 7.12 -2.39 -0.02 2.11 16 41 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 43 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -85.39 363.05 1.29 -84.10 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.19 Total: 13.24 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 6.42 Total: 20.38 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -4.89 Total: -117.36 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -2.46 Total: -50.07 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.71 kcal Total: -85.39 1.29 -84.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692352219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.748 kcal (2) G-P(sol) polarization free energy of solvation -85.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds