Wall clock time and date at job start Tue Mar 31 2020 02:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00211 * 2 1 4 4 C 1.52995 * 109.47488 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47360 * 305.00268 * 4 3 2 6 6 O 1.42904 * 109.47048 * 64.99400 * 4 3 2 7 7 C 1.42890 * 114.00562 * 270.00259 * 6 4 3 8 8 C 1.50693 * 109.47268 * 184.99783 * 4 3 2 9 9 O 1.21281 * 120.00140 * 244.99965 * 8 4 3 10 10 N 1.34774 * 120.00159 * 65.00254 * 8 4 3 11 11 C 1.46503 * 120.00479 * 179.72591 * 10 8 4 12 12 C 1.52989 * 109.47376 * 185.11327 * 11 10 8 13 13 H 1.08998 * 109.87615 * 305.50607 * 12 11 10 14 14 C 1.54330 * 109.88533 * 66.68145 * 12 11 10 15 15 C 1.55160 * 102.94154 * 141.61062 * 14 12 11 16 16 C 1.54918 * 101.58321 * 324.49950 * 15 14 12 17 17 N 1.47025 * 109.88499 * 184.48918 * 12 11 10 18 18 C 1.36946 * 125.64422 * 61.67482 * 17 12 11 19 19 H 1.08004 * 119.99789 * 14.82376 * 18 17 12 20 20 C 1.38806 * 119.99749 * 194.82250 * 18 17 12 21 21 N 1.31619 * 120.00528 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46885 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47098 * 120.00184 * 22 20 18 25 25 H 1.48502 * 109.47121 * 240.00394 * 22 20 18 26 26 H 1.08996 * 109.46792 * 60.00142 * 1 2 3 27 27 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47193 * 299.99989 * 1 2 3 29 29 H 1.09003 * 109.47420 * 59.99556 * 3 2 1 30 30 H 1.08997 * 109.46892 * 300.00243 * 3 2 1 31 31 H 1.09004 * 109.47446 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47113 * 299.99777 * 7 6 4 33 33 H 1.09007 * 109.47368 * 59.99841 * 7 6 4 34 34 H 0.97006 * 120.00156 * 359.97438 * 10 8 4 35 35 H 1.09001 * 109.46579 * 305.11569 * 11 10 8 36 36 H 1.08998 * 109.47092 * 65.10907 * 11 10 8 37 37 H 1.08989 * 110.72251 * 259.97352 * 14 12 11 38 38 H 1.09002 * 110.71671 * 23.24874 * 14 12 11 39 39 H 1.09002 * 111.00415 * 206.42958 * 15 14 12 40 40 H 1.08997 * 111.00740 * 82.57510 * 15 14 12 41 41 H 1.09002 * 110.36239 * 278.17403 * 16 15 14 42 42 H 1.09000 * 110.45788 * 155.89605 * 16 15 14 43 43 H 0.96998 * 120.00479 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8427 6 8 3.9658 0.5791 -1.2201 7 6 4.0472 -0.8464 -1.1647 8 6 4.1479 2.5560 0.1244 9 8 4.8068 3.0103 -0.7868 10 7 3.9634 3.2775 1.2477 11 6 4.5638 4.6082 1.3705 12 6 4.3115 5.1537 2.7774 13 1 3.2441 5.1331 2.9969 14 6 5.0803 4.3076 3.8141 15 6 5.5746 5.3696 4.8316 16 6 5.8736 6.5737 3.9039 17 7 4.8161 6.5310 2.8777 18 6 4.3760 7.5978 2.1403 19 1 3.4481 7.5292 1.5919 20 6 5.1226 8.7673 2.0978 21 7 6.2537 8.8507 2.7656 22 14 4.5220 10.2227 1.0926 23 1 3.2331 9.8763 0.4413 24 1 4.3263 11.3935 1.9848 25 1 5.5288 10.5555 0.0529 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6886 1.8465 0.8899 30 1 1.6886 1.8463 -0.8899 31 1 4.3802 -1.2291 -2.1295 32 1 4.7579 -1.1400 -0.3921 33 1 3.0653 -1.2576 -0.9305 34 1 3.4361 2.9143 1.9764 35 1 5.6373 4.5401 1.1943 36 1 4.1168 5.2777 0.6356 37 1 4.4154 3.5914 4.2967 38 1 5.9236 3.7987 3.3474 39 1 6.4789 5.0334 5.3390 40 1 4.7933 5.6151 5.5508 41 1 6.8548 6.4624 3.4423 42 1 5.8220 7.5077 4.4633 43 1 6.7756 9.6678 2.7356 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753112107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:40 Heat of formation + Delta-G solvation = -100.760515 kcal Electronic energy + Delta-G solvation = -23483.708452 eV Core-core repulsion = 19951.215887 eV Total energy + Delta-G solvation = -3532.492565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.00467 -38.37338 -37.60852 -36.96552 -34.30562 -32.52802 -31.24912 -29.59196 -28.55376 -27.24449 -26.13587 -24.95765 -24.19560 -23.06113 -20.51771 -20.10139 -19.54460 -17.70050 -17.26263 -16.74744 -16.55570 -15.93021 -15.74974 -15.38595 -14.80440 -14.59198 -14.52727 -14.21590 -13.88369 -13.72978 -13.11191 -12.98127 -12.70814 -12.14708 -12.05994 -11.91518 -11.77856 -11.66418 -11.35384 -11.34466 -10.95634 -10.82010 -10.27791 -10.11017 -10.08378 -9.98941 -9.89587 -9.84854 -9.74554 -9.43739 -8.73081 -8.60063 -6.86407 -5.79223 -3.16169 2.62234 2.94870 3.38665 3.45210 3.46974 3.48432 4.01687 4.47028 4.59444 4.77558 4.86887 4.98818 5.06498 5.11949 5.24375 5.30689 5.35412 5.37118 5.42355 5.45337 5.47891 5.59803 5.68134 5.78068 6.02045 6.09559 6.21465 6.42588 6.51490 6.57691 6.65709 6.73354 6.76558 6.91971 7.03690 7.49001 7.58922 7.70281 7.77115 8.23003 8.40297 9.14939 9.75531 10.42544 11.32853 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.003758 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.188339 B = 7448.353916 C = 7838.163209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.044 3.956 4 C 0.077 3.923 5 H 0.093 0.907 6 O -0.355 6.355 7 C 0.029 3.971 8 C 0.510 3.490 9 O -0.514 6.514 10 N -0.720 5.720 11 C 0.109 3.891 12 C 0.152 3.848 13 H 0.037 0.963 14 C -0.127 4.127 15 C -0.148 4.148 16 C 0.172 3.828 17 N -0.589 5.589 18 C -0.235 4.235 19 H 0.076 0.924 20 C 0.000 4.000 21 N -0.914 5.914 22 Si 0.910 3.090 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.395 0.605 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.854 -18.569 0.139 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.033 4.033 4 C 0.015 3.985 5 H 0.110 0.890 6 O -0.272 6.272 7 C -0.068 4.068 8 C 0.293 3.707 9 O -0.388 6.388 10 N -0.374 5.374 11 C -0.016 4.016 12 C 0.044 3.956 13 H 0.055 0.945 14 C -0.165 4.165 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.313 5.313 18 C -0.364 4.364 19 H 0.094 0.906 20 C -0.198 4.198 21 N -0.560 5.560 22 Si 0.741 3.259 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.215 1.215 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.228 0.772 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.119 -18.021 -0.749 19.780 hybrid contribution -0.749 0.619 -0.030 0.972 sum -8.868 -17.403 -0.779 19.547 Atomic orbital electron populations 1.22770 0.80624 1.02805 1.00354 1.87832 1.20117 1.27279 1.95524 1.23062 0.92643 0.85578 1.02030 1.21957 0.92324 0.94092 0.90126 0.88966 1.88027 1.87752 1.20001 1.31463 1.22936 1.01040 0.80538 1.02255 1.20024 0.81690 0.85831 0.83108 1.90752 1.38860 1.70454 1.38709 1.46131 1.54289 1.19335 1.17607 1.22307 0.98431 0.80238 1.00599 1.21133 0.96601 0.86914 0.91000 0.94490 1.22616 0.99492 0.97202 0.97149 1.23006 0.99813 0.98079 0.97819 1.21462 0.90848 0.94836 0.88158 1.44504 1.42852 1.01310 1.42632 1.19027 1.03162 0.90655 1.23517 0.90583 1.24922 0.96155 0.98855 0.99828 1.69943 1.14553 1.27057 1.44470 0.86077 0.77937 0.82317 0.79618 1.20360 1.21694 1.21543 0.93835 0.89523 0.93797 0.91646 0.91552 0.89662 0.94224 0.92350 0.77150 0.91460 0.91257 0.92389 0.91777 0.92317 0.92298 0.95552 0.90951 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.89 8.83 -40.09 -0.35 -4.25 16 3 C 0.04 0.47 5.57 37.16 0.21 0.68 16 4 C 0.08 0.97 2.91 -27.89 -0.08 0.89 16 5 H 0.09 0.94 7.79 -51.93 -0.40 0.54 16 6 O -0.36 -5.13 9.88 -59.70 -0.59 -5.72 16 7 C 0.03 0.30 10.71 101.05 1.08 1.38 16 8 C 0.51 8.21 7.18 -10.99 -0.08 8.13 16 9 O -0.51 -10.91 16.50 -14.30 -0.24 -11.15 16 10 N -0.72 -10.49 5.26 -60.30 -0.32 -10.81 16 11 C 0.11 2.07 5.10 -4.05 -0.02 2.05 16 12 C 0.15 2.91 3.19 -66.95 -0.21 2.70 16 13 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 14 C -0.13 -2.04 6.20 -24.89 -0.15 -2.20 16 15 C -0.15 -2.66 7.09 -24.58 -0.17 -2.83 16 16 C 0.17 4.04 5.41 -2.53 -0.01 4.03 16 17 N -0.59 -14.40 3.13 -162.57 -0.51 -14.91 16 18 C -0.24 -6.38 9.72 -15.06 -0.15 -6.52 16 19 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 20 C 0.00 0.00 5.47 -17.43 -0.10 -0.10 16 21 N -0.91 -26.47 10.58 55.49 0.59 -25.88 16 22 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.57 7.77 -51.93 -0.40 0.17 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 33 H 0.06 0.56 6.40 -51.93 -0.33 0.23 16 34 H 0.40 4.36 8.10 -40.82 -0.33 4.03 16 35 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 36 H 0.07 1.50 7.86 -51.93 -0.41 1.09 16 37 H 0.06 0.75 8.14 -51.94 -0.42 0.33 16 38 H 0.06 1.03 7.78 -51.93 -0.40 0.63 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 42 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -33.37 350.82 -6.98 -40.35 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.25 Total: 0.57 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 1.42 Total: 9.53 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.24 Total: -51.60 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -1.18 Total: -21.12 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.37 -6.98 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753112107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.409 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds