Wall clock time and date at job start Tue Mar 31 2020 02:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00211 * 2 1 4 4 C 1.52995 * 109.47488 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47360 * 305.00268 * 4 3 2 6 6 O 1.42904 * 109.47048 * 64.99400 * 4 3 2 7 7 C 1.42890 * 114.00562 * 270.00259 * 6 4 3 8 8 C 1.50693 * 109.47268 * 184.99783 * 4 3 2 9 9 O 1.21281 * 120.00140 * 244.99965 * 8 4 3 10 10 N 1.34774 * 120.00159 * 65.00254 * 8 4 3 11 11 C 1.46503 * 120.00479 * 179.72591 * 10 8 4 12 12 C 1.52989 * 109.47376 * 185.11327 * 11 10 8 13 13 H 1.08998 * 109.87615 * 305.50607 * 12 11 10 14 14 C 1.54330 * 109.88533 * 66.68145 * 12 11 10 15 15 C 1.55160 * 102.94154 * 141.61062 * 14 12 11 16 16 C 1.54918 * 101.58321 * 324.49950 * 15 14 12 17 17 N 1.47025 * 109.88499 * 184.48918 * 12 11 10 18 18 C 1.36946 * 125.64422 * 61.67482 * 17 12 11 19 19 H 1.08004 * 119.99789 * 14.82376 * 18 17 12 20 20 C 1.38806 * 119.99749 * 194.82250 * 18 17 12 21 21 N 1.31619 * 120.00528 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46885 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47098 * 120.00184 * 22 20 18 25 25 H 1.48502 * 109.47121 * 240.00394 * 22 20 18 26 26 H 1.08996 * 109.46792 * 60.00142 * 1 2 3 27 27 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47193 * 299.99989 * 1 2 3 29 29 H 1.09003 * 109.47420 * 59.99556 * 3 2 1 30 30 H 1.08997 * 109.46892 * 300.00243 * 3 2 1 31 31 H 1.09004 * 109.47446 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47113 * 299.99777 * 7 6 4 33 33 H 1.09007 * 109.47368 * 59.99841 * 7 6 4 34 34 H 0.97006 * 120.00156 * 359.97438 * 10 8 4 35 35 H 1.09001 * 109.46579 * 305.11569 * 11 10 8 36 36 H 1.08998 * 109.47092 * 65.10907 * 11 10 8 37 37 H 1.08989 * 110.72251 * 259.97352 * 14 12 11 38 38 H 1.09002 * 110.71671 * 23.24874 * 14 12 11 39 39 H 1.09002 * 111.00415 * 206.42958 * 15 14 12 40 40 H 1.08997 * 111.00740 * 82.57510 * 15 14 12 41 41 H 1.09002 * 110.36239 * 278.17403 * 16 15 14 42 42 H 1.09000 * 110.45788 * 155.89605 * 16 15 14 43 43 H 0.96998 * 120.00479 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8427 6 8 3.9658 0.5791 -1.2201 7 6 4.0472 -0.8464 -1.1647 8 6 4.1479 2.5560 0.1244 9 8 4.8068 3.0103 -0.7868 10 7 3.9634 3.2775 1.2477 11 6 4.5638 4.6082 1.3705 12 6 4.3115 5.1537 2.7774 13 1 3.2441 5.1331 2.9969 14 6 5.0803 4.3076 3.8141 15 6 5.5746 5.3696 4.8316 16 6 5.8736 6.5737 3.9039 17 7 4.8161 6.5310 2.8777 18 6 4.3760 7.5978 2.1403 19 1 3.4481 7.5292 1.5919 20 6 5.1226 8.7673 2.0978 21 7 6.2537 8.8507 2.7656 22 14 4.5220 10.2227 1.0926 23 1 3.2331 9.8763 0.4413 24 1 4.3263 11.3935 1.9848 25 1 5.5288 10.5555 0.0529 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6886 1.8465 0.8899 30 1 1.6886 1.8463 -0.8899 31 1 4.3802 -1.2291 -2.1295 32 1 4.7579 -1.1400 -0.3921 33 1 3.0653 -1.2576 -0.9305 34 1 3.4361 2.9143 1.9764 35 1 5.6373 4.5401 1.1943 36 1 4.1168 5.2777 0.6356 37 1 4.4154 3.5914 4.2967 38 1 5.9236 3.7987 3.3474 39 1 6.4789 5.0334 5.3390 40 1 4.7933 5.6151 5.5508 41 1 6.8548 6.4624 3.4423 42 1 5.8220 7.5077 4.4633 43 1 6.7756 9.6678 2.7356 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753112107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:39 Heat of formation + Delta-G solvation = -125.204482 kcal Electronic energy + Delta-G solvation = -23484.768422 eV Core-core repulsion = 19951.215887 eV Total energy + Delta-G solvation = -3533.552535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23092 -39.58009 -38.93964 -37.90625 -35.82104 -34.42931 -32.33708 -31.32569 -30.05786 -27.96183 -27.01818 -26.62101 -25.67908 -24.23674 -22.06789 -21.52100 -21.12949 -19.05473 -18.35727 -18.24721 -17.56270 -17.14939 -16.80417 -16.55455 -16.21020 -16.01826 -15.88018 -15.62630 -15.14544 -14.87867 -14.58289 -14.05473 -13.96722 -13.66730 -13.50182 -13.36318 -13.01686 -12.86014 -12.81118 -12.68725 -12.42472 -12.15685 -11.98318 -11.87204 -11.72859 -11.48772 -11.38977 -11.09365 -10.79256 -10.69203 -10.51016 -10.14760 -8.85957 -7.89288 -5.26826 1.40509 1.43425 1.46019 1.54851 1.76887 2.47869 2.68450 3.02692 3.31185 3.64605 3.74771 3.86465 3.93036 3.98556 3.99877 4.27367 4.28893 4.43343 4.45967 4.54579 4.55172 4.58297 4.63408 4.70872 4.73778 4.88187 4.95835 4.96544 5.01214 5.15434 5.20822 5.32230 5.47691 5.56670 5.66900 5.78812 6.01903 6.07717 6.22894 6.52472 7.08677 7.17683 7.76049 8.41591 9.21924 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.003758 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.188339 B = 7448.353916 C = 7838.163209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.050 3.950 4 C 0.084 3.916 5 H 0.124 0.876 6 O -0.391 6.391 7 C 0.026 3.974 8 C 0.510 3.490 9 O -0.573 6.573 10 N -0.698 5.698 11 C 0.128 3.872 12 C 0.148 3.852 13 H 0.058 0.942 14 C -0.114 4.114 15 C -0.133 4.133 16 C 0.172 3.828 17 N -0.612 5.612 18 C -0.239 4.239 19 H 0.078 0.922 20 C -0.059 4.059 21 N -0.946 5.946 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.288 1.288 25 H -0.297 1.297 26 H 0.042 0.958 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.418 0.582 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.072 0.928 41 H -0.010 1.010 42 H 0.035 0.965 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.938 -21.202 1.394 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C -0.027 4.027 4 C 0.023 3.977 5 H 0.142 0.858 6 O -0.310 6.310 7 C -0.069 4.069 8 C 0.296 3.704 9 O -0.452 6.452 10 N -0.353 5.353 11 C 0.002 3.998 12 C 0.041 3.959 13 H 0.075 0.925 14 C -0.151 4.151 15 C -0.172 4.172 16 C 0.047 3.953 17 N -0.336 5.336 18 C -0.368 4.368 19 H 0.096 0.904 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.799 3.201 23 H -0.190 1.190 24 H -0.215 1.215 25 H -0.224 1.224 26 H 0.060 0.940 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.256 0.744 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.008 0.992 42 H 0.054 0.946 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.265 -20.718 0.544 23.128 hybrid contribution -0.145 1.347 -0.443 1.425 sum -10.410 -19.371 0.101 21.992 Atomic orbital electron populations 1.22976 0.79051 1.04185 1.00938 1.87798 1.21719 1.26579 1.95624 1.22933 0.91201 0.86179 1.02431 1.21923 0.93355 0.91674 0.90784 0.85834 1.87986 1.88154 1.22215 1.32620 1.23100 1.01945 0.78523 1.03378 1.20757 0.80528 0.87012 0.82143 1.90729 1.41571 1.72079 1.40784 1.45772 1.53766 1.17512 1.18247 1.21756 0.96477 0.81866 0.99711 1.21368 0.97877 0.84891 0.91755 0.92481 1.22624 1.00034 0.96930 0.95535 1.22869 1.01421 0.95611 0.97250 1.21278 0.89291 0.96041 0.88662 1.44777 1.42843 1.03181 1.42801 1.19350 1.03081 0.91628 1.22753 0.90380 1.25677 0.96702 1.01532 1.01400 1.70143 1.15801 1.27259 1.46155 0.85138 0.77605 0.79402 0.77990 1.19045 1.21500 1.22387 0.93972 0.87823 0.92502 0.89273 0.93182 0.88836 0.92863 0.91543 0.74395 0.94523 0.94636 0.87307 0.91755 0.90015 0.90949 0.99204 0.94611 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.74 8.83 -144.34 -1.27 -8.01 16 3 C 0.05 0.93 5.57 71.98 0.40 1.33 16 4 C 0.08 1.93 2.91 29.84 0.09 2.01 16 5 H 0.12 2.04 7.79 -2.39 -0.02 2.02 16 6 O -0.39 -10.84 9.88 -125.59 -1.24 -12.08 16 7 C 0.03 0.48 10.71 113.37 1.21 1.70 16 8 C 0.51 15.92 7.18 87.66 0.63 16.55 16 9 O -0.57 -24.92 16.50 15.96 0.26 -24.66 16 10 N -0.70 -18.97 5.26 -463.08 -2.44 -21.41 16 11 C 0.13 4.85 5.10 86.37 0.44 5.29 16 12 C 0.15 5.43 3.19 45.34 0.14 5.57 16 13 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 14 C -0.11 -3.24 6.20 31.79 0.20 -3.05 16 15 C -0.13 -4.43 7.09 31.99 0.23 -4.21 16 16 C 0.17 8.28 5.41 86.86 0.47 8.75 16 17 N -0.61 -30.21 3.13 -668.25 -2.09 -32.30 16 18 C -0.24 -13.20 9.72 84.03 0.82 -12.38 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.06 -3.39 5.47 84.86 0.46 -2.92 16 21 N -0.95 -57.12 10.58 21.65 0.23 -56.89 16 22 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 26 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.09 1.21 7.77 -2.39 -0.02 1.19 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.05 0.82 8.09 -2.38 -0.02 0.80 16 33 H 0.07 1.11 6.40 -2.38 -0.02 1.09 16 34 H 0.42 7.51 8.10 -92.70 -0.75 6.76 16 35 H 0.04 1.61 8.03 -2.39 -0.02 1.59 16 36 H 0.04 1.58 7.86 -2.39 -0.02 1.56 16 37 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.06 1.87 7.78 -2.39 -0.02 1.85 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H -0.01 -0.55 8.06 -2.39 -0.02 -0.57 16 42 H 0.04 1.94 6.94 -2.39 -0.02 1.93 16 43 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -77.69 350.82 2.06 -75.64 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.24 Total: 11.14 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 6.34 Total: 20.16 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -4.30 Total: -110.59 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -2.25 Total: -44.75 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -77.69 2.06 -75.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753112107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.568 kcal (2) G-P(sol) polarization free energy of solvation -77.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds