Wall clock time and date at job start Tue Mar 31 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47317 * 55.00691 * 4 3 2 6 6 O 1.42900 * 109.47586 * 295.00029 * 4 3 2 7 7 C 1.42895 * 113.99990 * 150.00096 * 6 4 3 8 8 C 1.50710 * 109.46737 * 175.00089 * 4 3 2 9 9 O 1.21277 * 119.99452 * 115.00444 * 8 4 3 10 10 N 1.34771 * 120.00178 * 294.99927 * 8 4 3 11 11 C 1.46511 * 119.99858 * 0.02562 * 10 8 4 12 12 C 1.46494 * 120.00143 * 180.02562 * 10 8 4 13 13 H 1.08995 * 110.88556 * 3.87878 * 12 10 8 14 14 C 1.55164 * 111.00432 * 240.00169 * 12 10 8 15 15 C 1.54319 * 102.94330 * 277.42701 * 14 12 10 16 16 N 1.47030 * 107.27028 * 337.80612 * 15 14 12 17 17 C 1.36940 * 125.64633 * 178.89335 * 16 15 14 18 18 H 1.07997 * 119.99486 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00132 * 0.02703 * 17 16 15 20 20 N 1.31621 * 119.99717 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46865 * 60.00055 * 21 19 17 23 23 H 1.48499 * 109.46944 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47157 * 300.00129 * 21 19 17 25 25 C 1.47421 * 108.70385 * 358.94381 * 16 15 14 26 26 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 27 27 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 28 28 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 30 30 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 31 31 H 1.09001 * 109.47072 * 60.00300 * 7 6 4 32 32 H 1.09004 * 109.46965 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47596 * 300.00168 * 7 6 4 34 34 H 1.09002 * 109.46812 * 90.00145 * 11 10 8 35 35 H 1.09001 * 109.46665 * 209.99819 * 11 10 8 36 36 H 1.08996 * 109.47017 * 330.00034 * 11 10 8 37 37 H 1.09003 * 110.71967 * 35.79344 * 14 12 10 38 38 H 1.09005 * 110.71737 * 159.06231 * 14 12 10 39 39 H 1.08995 * 109.88258 * 97.22322 * 15 14 12 40 40 H 1.09004 * 109.88407 * 218.39071 * 15 14 12 41 41 H 0.97006 * 119.99748 * 180.02562 * 20 19 17 42 42 H 1.09000 * 110.36370 * 265.28943 * 25 16 15 43 43 H 1.08998 * 110.36913 * 142.97007 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5683 -0.8410 6 8 3.9649 0.5797 1.2219 7 6 5.1682 -0.1816 1.1017 8 6 4.1480 2.5561 -0.1232 9 8 4.8062 3.0107 0.7884 10 7 3.9644 3.2772 -1.2468 11 6 3.1688 2.7281 -2.3478 12 6 4.5603 4.6100 -1.3674 13 1 5.1736 4.8417 -0.4967 14 6 3.4674 5.6906 -1.5812 15 6 3.1954 5.6117 -3.0982 16 7 4.3816 5.0087 -3.7236 17 6 4.5324 4.7442 -5.0587 18 1 5.4465 4.2970 -5.4206 19 6 3.5106 5.0507 -5.9468 20 7 2.3969 5.5961 -5.5056 21 14 3.7166 4.6905 -7.7681 22 1 3.9366 3.2348 -7.9629 23 1 2.4917 5.1074 -8.4967 24 1 4.8850 5.4423 -8.2923 25 6 5.3812 4.7350 -2.6751 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8465 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 5.9760 0.4669 0.7626 32 1 5.4267 -0.6080 2.0710 33 1 5.0196 -0.9846 0.3799 34 1 2.1236 3.0078 -2.2154 35 1 3.5345 3.1266 -3.2942 36 1 3.2564 1.6417 -2.3528 37 1 2.5684 5.4471 -1.0149 38 1 3.8417 6.6770 -1.3073 39 1 2.3206 4.9893 -3.2860 40 1 3.0337 6.6126 -3.4984 41 1 1.6826 5.8100 -6.1262 42 1 6.0891 5.5605 -2.6012 43 1 5.9052 3.8025 -2.8847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753444541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:17 Heat of formation + Delta-G solvation = -77.769443 kcal Electronic energy + Delta-G solvation = -24551.576653 eV Core-core repulsion = 21020.081056 eV Total energy + Delta-G solvation = -3531.495597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.29960 -38.33984 -37.52899 -36.69915 -34.40083 -32.43199 -30.73874 -29.29688 -27.86231 -26.88557 -26.20556 -25.99181 -24.52918 -23.38766 -20.78148 -20.13166 -18.75745 -17.60488 -17.08780 -16.70992 -16.48677 -15.84337 -15.69046 -15.33558 -14.70641 -14.62183 -14.42827 -14.10045 -13.81322 -13.42407 -13.02597 -12.68846 -12.50862 -12.14158 -11.99187 -11.85351 -11.75375 -11.58275 -11.37843 -11.05121 -10.99893 -10.93251 -10.78619 -10.51798 -10.22297 -10.19318 -9.97427 -9.74728 -9.71519 -9.08521 -8.76217 -8.25726 -6.89531 -5.81498 -3.16236 2.63916 3.10241 3.34011 3.39680 3.40067 3.67824 3.81252 4.41337 4.71318 4.83714 4.90599 5.21146 5.24970 5.31230 5.32267 5.36216 5.38971 5.43815 5.46469 5.51852 5.56054 5.62951 5.67873 5.69032 5.83695 5.99007 6.16309 6.29339 6.44814 6.49017 6.57163 6.72324 6.89443 6.99629 7.07964 7.46902 7.52402 7.71984 7.73971 8.14163 8.37526 9.11541 9.70931 10.36223 11.29245 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.018120 B = 0.004918 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.922483 B = 5691.568792 C = 6288.317075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.080 3.920 5 H 0.094 0.906 6 O -0.354 6.354 7 C 0.032 3.968 8 C 0.491 3.509 9 O -0.534 6.534 10 N -0.584 5.584 11 C 0.054 3.946 12 C 0.122 3.878 13 H 0.100 0.900 14 C -0.155 4.155 15 C 0.174 3.826 16 N -0.602 5.602 17 C -0.234 4.234 18 H 0.078 0.922 19 C -0.003 4.003 20 N -0.919 5.919 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.125 3.875 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.128 0.872 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.254 0.746 42 H 0.032 0.968 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 -9.042 9.498 13.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.014 4.014 4 C 0.018 3.982 5 H 0.112 0.888 6 O -0.270 6.270 7 C -0.065 4.065 8 C 0.277 3.723 9 O -0.411 6.411 10 N -0.318 5.318 11 C -0.088 4.088 12 C 0.017 3.983 13 H 0.118 0.882 14 C -0.195 4.195 15 C 0.050 3.950 16 N -0.330 5.330 17 C -0.362 4.362 18 H 0.095 0.905 19 C -0.200 4.200 20 N -0.566 5.566 21 Si 0.741 3.259 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.002 4.002 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.146 0.854 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.363 -8.921 9.949 13.432 hybrid contribution -0.038 0.088 -1.324 1.328 sum -1.402 -8.833 8.625 12.425 Atomic orbital electron populations 1.22761 0.80699 1.02788 1.00272 1.87874 1.19881 1.26993 1.95515 1.22677 0.90450 0.85810 1.02471 1.21949 0.94057 0.92435 0.89779 0.88841 1.87976 1.42037 1.67061 1.29966 1.22828 0.86745 0.94345 1.02565 1.21007 0.81666 0.87243 0.82414 1.90665 1.40554 1.71065 1.38843 1.47799 1.51090 1.17110 1.15781 1.22436 0.95193 0.97684 0.93526 1.22282 0.95443 0.81208 0.99319 0.88234 1.23254 0.98059 0.97561 1.00586 1.21236 0.90067 0.98404 0.85300 1.44605 1.13458 1.72234 1.02670 1.18991 1.00769 1.35237 0.81221 0.90461 1.24784 0.96361 1.00792 0.98075 1.69956 1.05974 1.47448 1.33255 0.86223 0.76891 0.77955 0.84817 1.21127 1.21597 1.21181 1.21892 0.92227 0.98349 0.87684 0.93985 0.93718 0.89535 0.90135 0.91960 0.93741 0.89397 0.93909 0.92822 0.85409 0.92633 0.91947 0.91322 0.93124 0.93916 0.93606 0.95033 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.06 10.67 -40.08 -0.43 -5.49 16 3 C 0.06 0.84 5.34 37.16 0.20 1.04 16 4 C 0.08 1.17 1.99 -27.88 -0.06 1.11 16 5 H 0.09 1.25 6.78 -51.93 -0.35 0.90 16 6 O -0.35 -5.49 9.85 -59.70 -0.59 -6.08 16 7 C 0.03 0.39 10.81 101.05 1.09 1.48 16 8 C 0.49 8.39 7.05 -10.98 -0.08 8.31 16 9 O -0.53 -10.71 15.89 -14.30 -0.23 -10.94 16 10 N -0.58 -9.95 2.91 -171.47 -0.50 -10.45 16 11 C 0.05 0.89 7.18 59.85 0.43 1.32 16 12 C 0.12 2.20 3.66 -65.78 -0.24 1.96 16 13 H 0.10 1.80 7.02 -51.93 -0.36 1.44 16 14 C -0.16 -2.84 6.48 -24.90 -0.16 -3.00 16 15 C 0.17 3.90 4.33 -3.06 -0.01 3.89 16 16 N -0.60 -14.04 1.88 -170.07 -0.32 -14.36 16 17 C -0.23 -6.02 9.79 -15.06 -0.15 -6.17 16 18 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 19 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 20 N -0.92 -25.14 10.31 55.49 0.57 -24.57 16 21 Si 0.91 20.93 29.55 -169.99 -5.02 15.91 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.13 2.49 6.40 -2.53 -0.02 2.47 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.02 5.06 -51.93 -0.26 0.76 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.05 0.85 6.71 -51.93 -0.35 0.50 16 35 H 0.13 2.59 4.73 -51.93 -0.25 2.34 16 36 H 0.06 0.78 6.11 -51.93 -0.32 0.46 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 1.22 6.34 -51.93 -0.33 0.89 16 40 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 41 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -30.30 337.81 -6.20 -36.50 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.80 Total: 0.75 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 2.03 Total: 13.65 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.25 Total: -49.38 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -1.24 Total: -22.51 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.30 -6.20 -36.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753444541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.274 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds