Wall clock time and date at job start Tue Mar 31 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47317 * 55.00691 * 4 3 2 6 6 O 1.42900 * 109.47586 * 295.00029 * 4 3 2 7 7 C 1.42895 * 113.99990 * 150.00096 * 6 4 3 8 8 C 1.50710 * 109.46737 * 175.00089 * 4 3 2 9 9 O 1.21277 * 119.99452 * 115.00444 * 8 4 3 10 10 N 1.34771 * 120.00178 * 294.99927 * 8 4 3 11 11 C 1.46511 * 119.99858 * 0.02562 * 10 8 4 12 12 C 1.46494 * 120.00143 * 180.02562 * 10 8 4 13 13 H 1.08995 * 110.88556 * 3.87878 * 12 10 8 14 14 C 1.55164 * 111.00432 * 240.00169 * 12 10 8 15 15 C 1.54319 * 102.94330 * 277.42701 * 14 12 10 16 16 N 1.47030 * 107.27028 * 337.80612 * 15 14 12 17 17 C 1.36940 * 125.64633 * 178.89335 * 16 15 14 18 18 H 1.07997 * 119.99486 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00132 * 0.02703 * 17 16 15 20 20 N 1.31621 * 119.99717 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46865 * 60.00055 * 21 19 17 23 23 H 1.48499 * 109.46944 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47157 * 300.00129 * 21 19 17 25 25 C 1.47421 * 108.70385 * 358.94381 * 16 15 14 26 26 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 27 27 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 28 28 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 30 30 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 31 31 H 1.09001 * 109.47072 * 60.00300 * 7 6 4 32 32 H 1.09004 * 109.46965 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47596 * 300.00168 * 7 6 4 34 34 H 1.09002 * 109.46812 * 90.00145 * 11 10 8 35 35 H 1.09001 * 109.46665 * 209.99819 * 11 10 8 36 36 H 1.08996 * 109.47017 * 330.00034 * 11 10 8 37 37 H 1.09003 * 110.71967 * 35.79344 * 14 12 10 38 38 H 1.09005 * 110.71737 * 159.06231 * 14 12 10 39 39 H 1.08995 * 109.88258 * 97.22322 * 15 14 12 40 40 H 1.09004 * 109.88407 * 218.39071 * 15 14 12 41 41 H 0.97006 * 119.99748 * 180.02562 * 20 19 17 42 42 H 1.09000 * 110.36370 * 265.28943 * 25 16 15 43 43 H 1.08998 * 110.36913 * 142.97007 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5683 -0.8410 6 8 3.9649 0.5797 1.2219 7 6 5.1682 -0.1816 1.1017 8 6 4.1480 2.5561 -0.1232 9 8 4.8062 3.0107 0.7884 10 7 3.9644 3.2772 -1.2468 11 6 3.1688 2.7281 -2.3478 12 6 4.5603 4.6100 -1.3674 13 1 5.1736 4.8417 -0.4967 14 6 3.4674 5.6906 -1.5812 15 6 3.1954 5.6117 -3.0982 16 7 4.3816 5.0087 -3.7236 17 6 4.5324 4.7442 -5.0587 18 1 5.4465 4.2970 -5.4206 19 6 3.5106 5.0507 -5.9468 20 7 2.3969 5.5961 -5.5056 21 14 3.7166 4.6905 -7.7681 22 1 3.9366 3.2348 -7.9629 23 1 2.4917 5.1074 -8.4967 24 1 4.8850 5.4423 -8.2923 25 6 5.3812 4.7350 -2.6751 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8465 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 5.9760 0.4669 0.7626 32 1 5.4267 -0.6080 2.0710 33 1 5.0196 -0.9846 0.3799 34 1 2.1236 3.0078 -2.2154 35 1 3.5345 3.1266 -3.2942 36 1 3.2564 1.6417 -2.3528 37 1 2.5684 5.4471 -1.0149 38 1 3.8417 6.6770 -1.3073 39 1 2.3206 4.9893 -3.2860 40 1 3.0337 6.6126 -3.4984 41 1 1.6826 5.8100 -6.1262 42 1 6.0891 5.5605 -2.6012 43 1 5.9052 3.8025 -2.8847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753444541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:17 Heat of formation + Delta-G solvation = -96.703065 kcal Electronic energy + Delta-G solvation = -24552.397677 eV Core-core repulsion = 21020.081056 eV Total energy + Delta-G solvation = -3532.316621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64486 -39.66897 -38.71875 -37.92213 -35.94935 -34.18094 -32.03013 -30.96402 -29.42665 -27.83591 -27.51119 -27.10478 -26.22933 -24.61084 -22.17161 -21.93127 -20.15387 -18.94398 -18.78947 -17.95057 -17.63319 -17.13129 -16.73032 -16.61455 -16.36126 -15.90896 -15.77854 -15.51616 -15.20592 -14.74689 -14.38805 -14.04618 -13.81980 -13.63110 -13.46594 -13.40067 -12.92136 -12.82527 -12.76782 -12.68638 -12.42168 -12.26290 -12.07129 -12.05351 -12.00323 -11.80614 -11.57965 -11.46003 -10.68745 -10.68247 -10.37711 -9.74665 -8.78430 -7.80954 -5.16150 1.33544 1.51247 1.52410 1.58480 1.79370 2.52450 2.66975 2.72540 3.38814 3.48539 3.66509 3.77007 3.86527 3.89880 4.01500 4.24766 4.28560 4.33560 4.37244 4.50824 4.53949 4.57306 4.59336 4.62664 4.67396 4.71032 4.80020 4.87902 4.89032 4.95260 5.04018 5.25308 5.50626 5.53193 5.69392 5.81327 5.93503 6.09244 6.21490 6.37332 7.01756 7.13992 7.78927 8.43390 9.28309 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.018120 B = 0.004918 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.922483 B = 5691.568792 C = 6288.317075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.068 3.932 4 C 0.083 3.917 5 H 0.109 0.891 6 O -0.374 6.374 7 C 0.026 3.974 8 C 0.494 3.506 9 O -0.565 6.565 10 N -0.584 5.584 11 C 0.063 3.937 12 C 0.130 3.870 13 H 0.106 0.894 14 C -0.141 4.141 15 C 0.187 3.813 16 N -0.614 5.614 17 C -0.239 4.239 18 H 0.080 0.920 19 C -0.052 4.052 20 N -0.944 5.944 21 Si 0.970 3.030 22 H -0.276 1.276 23 H -0.297 1.297 24 H -0.284 1.284 25 C 0.126 3.874 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.005 0.995 41 H 0.247 0.753 42 H 0.038 0.962 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.524 -10.404 9.952 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.319 6.319 3 C -0.009 4.009 4 C 0.021 3.979 5 H 0.127 0.873 6 O -0.291 6.291 7 C -0.070 4.070 8 C 0.281 3.719 9 O -0.444 6.444 10 N -0.316 5.316 11 C -0.080 4.080 12 C 0.026 3.974 13 H 0.123 0.877 14 C -0.180 4.180 15 C 0.063 3.937 16 N -0.341 5.341 17 C -0.368 4.368 18 H 0.098 0.902 19 C -0.246 4.246 20 N -0.593 5.593 21 Si 0.799 3.201 22 H -0.202 1.202 23 H -0.223 1.223 24 H -0.211 1.211 25 C 0.000 4.000 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.023 0.977 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.285 -10.303 10.412 14.705 hybrid contribution -0.024 0.475 -1.429 1.506 sum -1.310 -9.828 8.983 13.379 Atomic orbital electron populations 1.22987 0.78961 1.04265 1.00974 1.87840 1.21763 1.26641 1.95624 1.22580 0.89604 0.86165 1.02533 1.21966 0.94795 0.90877 0.90244 0.87328 1.87955 1.43199 1.67406 1.30540 1.23021 0.85368 0.94330 1.04267 1.21446 0.80906 0.87889 0.81613 1.90648 1.41974 1.71967 1.39826 1.47817 1.50959 1.16748 1.16092 1.22312 0.95078 0.99037 0.91526 1.22131 0.95058 0.81852 0.98362 0.87655 1.23126 0.98841 0.98568 0.97491 1.20955 0.89382 0.95669 0.87722 1.44742 1.14490 1.72150 1.02703 1.19282 1.00636 1.34362 0.82517 0.90245 1.25453 0.96324 1.01333 1.01529 1.70142 1.06484 1.48735 1.33910 0.85288 0.76244 0.78025 0.80539 1.20192 1.22335 1.21078 1.21967 0.91896 0.98446 0.87660 0.93302 0.93002 0.87753 0.89555 0.92400 0.94728 0.87609 0.92065 0.92258 0.88830 0.90036 0.90625 0.89945 0.95121 0.97653 0.94382 0.94468 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.40 -9.66 10.67 -144.34 -1.54 -11.20 16 3 C 0.07 1.69 5.34 71.98 0.38 2.08 16 4 C 0.08 2.27 1.99 29.85 0.06 2.33 16 5 H 0.11 2.63 6.78 -2.39 -0.02 2.61 16 6 O -0.37 -10.94 9.85 -125.59 -1.24 -12.18 16 7 C 0.03 0.58 10.81 113.37 1.23 1.81 16 8 C 0.49 16.12 7.05 87.66 0.62 16.74 16 9 O -0.56 -21.98 15.89 15.97 0.25 -21.72 16 10 N -0.58 -19.03 2.91 -814.81 -2.37 -21.40 16 11 C 0.06 1.98 7.18 127.77 0.92 2.90 16 12 C 0.13 4.55 3.66 46.39 0.17 4.72 16 13 H 0.11 3.64 7.02 -2.39 -0.02 3.62 16 14 C -0.14 -5.01 6.48 31.78 0.21 -4.81 16 15 C 0.19 8.47 4.33 86.73 0.38 8.85 16 16 N -0.61 -28.65 1.88 -691.99 -1.30 -29.95 16 17 C -0.24 -12.32 9.79 84.03 0.82 -11.50 16 18 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 19 C -0.05 -2.77 5.49 84.86 0.47 -2.30 16 20 N -0.94 -52.59 10.31 21.65 0.22 -52.36 16 21 Si 0.97 43.12 29.55 68.60 2.03 45.14 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 C 0.13 4.92 6.40 86.86 0.56 5.47 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 2.01 5.06 -2.39 -0.01 2.00 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 34 H 0.06 1.80 6.71 -2.39 -0.02 1.79 16 35 H 0.09 3.74 4.73 -2.39 -0.01 3.73 16 36 H 0.08 2.12 6.11 -2.39 -0.01 2.10 16 37 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 39 H 0.03 1.50 6.34 -2.39 -0.02 1.48 16 40 H 0.01 0.27 7.51 -2.39 -0.02 0.26 16 41 H 0.25 13.57 8.31 -92.70 -0.77 12.80 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -64.55 337.81 4.10 -60.46 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.99 Total: 15.27 kcal Atomic # 6 Polarization: 20.90 SS G_CDS: 7.05 Total: 27.95 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -3.45 Total: -103.72 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -2.52 Total: -45.10 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -64.55 4.10 -60.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753444541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.247 kcal (2) G-P(sol) polarization free energy of solvation -64.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds