Wall clock time and date at job start Tue Mar 31 2020 02:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00222 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47165 * 179.97438 * 18 16 15 20 20 O 1.42965 * 109.47461 * 294.99893 * 19 18 16 21 21 C 1.43095 * 113.77236 * 181.20550 * 20 19 18 22 22 C 1.53262 * 108.94142 * 57.96992 * 21 20 19 23 23 C 1.53255 * 108.84628 * 305.47852 * 22 21 20 24 24 O 1.42970 * 109.47203 * 174.99768 * 19 18 16 25 25 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 27 27 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 28 28 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 29 29 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 30 30 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 31 31 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 33 33 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 34 34 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 35 35 H 1.08997 * 109.47244 * 299.99932 * 18 16 15 36 36 H 1.09004 * 109.47034 * 60.00271 * 18 16 15 37 37 H 1.09000 * 109.47436 * 55.00126 * 19 18 16 38 38 H 1.09004 * 109.55468 * 298.13271 * 21 20 19 39 39 H 1.09004 * 109.55648 * 177.81389 * 21 20 19 40 40 H 1.09002 * 109.57096 * 185.66610 * 22 21 20 41 41 H 1.08997 * 109.67769 * 65.35017 * 22 21 20 42 42 H 1.09008 * 109.55818 * 294.68640 * 23 22 21 43 43 H 1.09002 * 109.64996 * 174.41794 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 2.8565 -1.6029 6.3792 12 1 2.9366 0.6778 7.1983 13 1 0.8649 -0.5779 7.3093 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6272 -1.4426 -3.7792 18 6 1.5973 0.3651 -4.8933 19 6 2.1084 -0.3554 -6.1424 20 8 3.5381 -0.3539 -6.1421 21 6 4.1158 -0.9839 -7.2897 22 6 3.6124 -0.2759 -8.5522 23 6 2.0799 -0.2662 -8.5366 24 8 1.6315 0.3182 -7.3098 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.1264 -0.7995 1.2056 29 1 1.6054 -1.7198 1.2950 30 1 1.1483 0.8591 2.3518 31 1 0.6807 1.9070 5.4838 32 1 3.1264 -0.7994 -1.2056 33 1 1.6054 -1.7198 -1.2953 34 1 1.1483 0.8592 -2.3518 35 1 0.5110 0.4426 -4.9370 36 1 2.0313 1.3640 -4.8473 37 1 1.7462 -1.3835 -6.1428 38 1 3.8208 -2.0329 -7.3173 39 1 5.2022 -0.9100 -7.2383 40 1 3.9653 -0.8088 -9.4351 41 1 3.9839 0.7487 -8.5713 42 1 1.7077 -1.2880 -8.6115 43 1 1.7085 0.3200 -9.3772 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753611676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:25 Heat of formation + Delta-G solvation = -132.884432 kcal Electronic energy + Delta-G solvation = -22541.659765 eV Core-core repulsion = 19007.774202 eV Total energy + Delta-G solvation = -3533.885563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.46619 -39.40705 -36.82752 -35.93980 -34.34199 -33.53174 -32.49141 -30.65505 -29.81080 -26.54951 -26.31151 -25.41794 -23.75845 -22.30704 -21.49367 -20.54915 -19.77236 -17.96646 -17.21849 -16.97246 -16.76785 -16.04385 -15.95692 -15.36397 -15.17897 -15.06927 -14.49907 -14.33565 -13.68743 -13.62458 -13.54902 -13.22796 -12.95883 -12.79818 -12.43165 -12.13513 -11.97473 -11.88525 -11.45037 -11.44300 -11.05219 -10.90987 -10.69602 -10.55514 -10.40328 -10.34736 -10.05280 -9.97388 -9.83824 -9.65400 -9.00280 -8.87266 -6.91220 -5.76415 -3.04648 2.62118 2.81096 3.35860 3.44187 3.49959 3.52191 3.58959 4.33015 4.34740 4.47197 4.60003 4.62668 4.71889 4.91311 4.93864 5.01778 5.09916 5.16240 5.24407 5.35074 5.37592 5.40725 5.45525 5.58771 5.64719 5.83226 5.97881 6.02408 6.12516 6.26139 6.40481 6.50163 6.50715 6.66592 6.79001 6.86736 6.88275 7.48644 7.71913 8.20482 8.42875 9.54142 10.11609 10.46384 11.46692 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.053097 B = 0.002299 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.212479 B =12175.957166 C =12457.711492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.128 3.872 15 N -0.725 5.725 16 C 0.517 3.483 17 O -0.533 6.533 18 C -0.130 4.130 19 C 0.265 3.735 20 O -0.377 6.377 21 C 0.058 3.942 22 C -0.194 4.194 23 C 0.059 3.941 24 O -0.396 6.396 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.021 0.979 29 H 0.022 0.978 30 H 0.384 0.616 31 H 0.254 0.746 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.401 0.599 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.709 -1.866 -28.060 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.368 4.368 7 H 0.089 0.911 8 C -0.212 4.212 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.004 3.996 15 N -0.377 5.377 16 C 0.303 3.697 17 O -0.410 6.410 18 C -0.170 4.170 19 C 0.169 3.831 20 O -0.297 6.297 21 C -0.019 4.019 22 C -0.232 4.232 23 C -0.017 4.017 24 O -0.317 6.317 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.218 0.782 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.236 0.764 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.235 -2.495 -27.828 27.967 hybrid contribution -0.129 0.111 0.718 0.738 sum 1.105 -2.383 -27.110 27.237 Atomic orbital electron populations 1.21792 0.94671 1.01906 1.01500 1.21556 0.96702 1.00539 0.94186 0.90497 1.20577 0.96639 0.94189 0.85391 1.42353 1.67034 1.27590 1.00588 1.19290 1.28487 1.05433 0.83625 0.91097 1.24744 1.01071 0.97464 0.97879 1.69669 1.43594 1.16726 1.28343 0.86102 0.77560 0.77842 0.84616 1.20547 1.21892 1.21895 1.21411 1.00186 0.95183 0.82823 1.46012 1.57814 1.28036 1.05813 1.20115 0.79585 0.85665 0.84358 1.90729 1.39183 1.24469 1.86616 1.21468 1.03604 1.01383 0.90500 1.22859 0.80141 0.94988 0.85107 1.88187 1.19974 1.79121 1.42434 1.22619 0.99231 0.95591 0.84414 1.22816 0.97362 1.03290 0.99736 1.22636 0.93447 0.98751 0.86888 1.88055 1.72080 1.57170 1.14410 0.92852 0.91166 0.93869 0.96106 0.96012 0.78205 0.93594 0.91334 0.91382 0.76439 0.86611 0.87155 0.91740 0.92732 0.88299 0.89720 0.89966 0.92751 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.20 5.65 -4.04 -0.02 3.17 16 5 N -0.73 -18.38 5.33 -59.91 -0.32 -18.70 16 6 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 10 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 C 0.13 1.77 5.06 -4.04 -0.02 1.75 16 15 N -0.72 -8.39 5.28 -60.29 -0.32 -8.71 16 16 C 0.52 6.55 7.71 -10.99 -0.08 6.46 16 17 O -0.53 -8.84 15.42 -8.83 -0.14 -8.97 16 18 C -0.13 -1.24 5.78 -27.88 -0.16 -1.40 16 19 C 0.26 2.88 2.80 37.16 0.10 2.98 16 20 O -0.38 -4.67 9.77 -64.75 -0.63 -5.30 16 21 C 0.06 0.51 6.96 37.29 0.26 0.77 16 22 C -0.19 -1.29 6.35 -26.46 -0.17 -1.45 16 23 C 0.06 0.42 6.96 37.29 0.26 0.68 16 24 O -0.40 -3.98 10.54 -59.03 -0.62 -4.60 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 1.21 7.18 -51.93 -0.37 0.83 16 27 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.38 10.02 6.85 -40.82 -0.28 9.74 16 31 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.40 3.65 7.65 -40.82 -0.31 3.34 16 35 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.72 7.95 -51.93 -0.41 0.31 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -34.24 351.39 -8.22 -42.46 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.22 Total: 6.56 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 0.03 Total: 1.93 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.09 Total: -54.90 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -1.39 Total: -18.88 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.24 -8.22 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753611676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.424 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds