Wall clock time and date at job start Tue Mar 31 2020 02:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46502 * 109.47005 * 64.99872 * 4 2 1 6 6 C 1.36940 * 120.00284 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99632 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00388 * 180.02562 * 6 5 4 9 9 N 1.31626 * 119.99842 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00232 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47254 * 59.99875 * 10 8 6 12 12 H 1.48498 * 109.47332 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46982 * 300.00062 * 10 8 6 14 14 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 15 15 N 1.46501 * 109.47135 * 295.00335 * 14 2 1 16 16 C 1.34783 * 119.99675 * 179.97438 * 15 14 2 17 17 O 1.21278 * 120.00464 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99677 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47137 * 180.02562 * 18 16 15 20 20 O 1.42973 * 109.46645 * 294.99354 * 19 18 16 21 21 C 1.43090 * 113.76684 * 181.20722 * 20 19 18 22 22 C 1.53257 * 108.94375 * 57.97025 * 21 20 19 23 23 C 1.53257 * 108.84704 * 305.47415 * 22 21 20 24 24 O 1.42967 * 109.47318 * 174.99869 * 19 18 16 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 29 29 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 30 30 H 0.96995 * 120.00463 * 0.02562 * 5 4 2 31 31 H 0.96996 * 119.99845 * 179.97438 * 9 8 6 32 32 H 1.09006 * 109.47194 * 55.00274 * 14 2 1 33 33 H 1.08997 * 109.47756 * 174.99755 * 14 2 1 34 34 H 0.96997 * 120.00359 * 0.02562 * 15 14 2 35 35 H 1.09007 * 109.47112 * 299.99764 * 18 16 15 36 36 H 1.08999 * 109.47201 * 59.99776 * 18 16 15 37 37 H 1.08997 * 109.47509 * 54.99605 * 19 18 16 38 38 H 1.09004 * 109.56111 * 298.12948 * 21 20 19 39 39 H 1.09001 * 109.55679 * 177.81506 * 21 20 19 40 40 H 1.09008 * 109.57120 * 185.66510 * 22 21 20 41 41 H 1.09001 * 109.67586 * 65.35109 * 22 21 20 42 42 H 1.09000 * 109.56045 * 294.68549 * 23 22 21 43 43 H 1.09002 * 109.64479 * 174.41369 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5622 -1.3381 -3.7864 8 6 1.6344 0.2963 -4.8161 9 7 0.9510 1.4145 -4.6931 10 14 2.1106 -0.3256 -6.5119 11 1 1.5172 -1.6691 -6.7311 12 1 1.6031 0.6136 -7.5441 13 1 3.5897 -0.4160 -6.6086 14 6 2.0400 -0.7212 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9956 -0.4135 3.6660 17 8 2.6249 -1.4440 3.7794 18 6 1.5964 0.3645 4.8934 19 6 2.1065 -0.3565 6.1426 20 8 1.4489 -1.6201 6.2654 21 6 1.8396 -2.3634 7.4240 22 6 1.5533 -1.5238 8.6737 23 6 2.2468 -0.1650 8.5268 24 8 1.8302 0.4387 7.2982 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 3.1263 -0.7994 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 1.1489 0.8594 -2.3518 31 1 0.6951 1.9158 -5.4831 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 1.1482 0.8591 2.3518 35 1 2.0310 1.3632 4.8478 36 1 0.5100 0.4427 4.9366 37 1 3.1819 -0.5133 6.0581 38 1 2.9049 -2.5880 7.3714 39 1 1.2712 -3.2924 7.4703 40 1 1.9386 -2.0372 9.5547 41 1 0.4784 -1.3759 8.7781 42 1 3.3276 -0.3062 8.5160 43 1 1.9712 0.4792 9.3617 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753611677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:27 Heat of formation + Delta-G solvation = -132.733652 kcal Electronic energy + Delta-G solvation = -22547.034284 eV Core-core repulsion = 19013.155260 eV Total energy + Delta-G solvation = -3533.879024 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.46647 -39.40628 -36.82470 -35.94091 -34.33918 -33.53213 -32.48837 -30.65426 -29.80717 -26.54415 -26.31199 -25.41377 -23.75698 -22.30209 -21.49471 -20.54660 -19.76958 -17.97239 -17.20618 -16.97757 -16.74474 -16.07112 -15.96208 -15.42985 -15.09825 -15.02765 -14.54199 -14.34319 -13.68043 -13.62687 -13.51073 -13.23376 -13.03856 -12.74546 -12.40031 -12.11401 -11.99704 -11.89013 -11.45064 -11.43941 -11.04732 -10.88682 -10.68352 -10.55511 -10.40414 -10.34841 -10.10136 -9.97655 -9.84074 -9.64486 -9.00138 -8.86035 -6.91130 -5.75847 -3.04211 2.62177 2.81167 3.35753 3.45522 3.49553 3.50681 3.59039 4.32904 4.34597 4.47210 4.60275 4.62841 4.71833 4.91097 4.93875 5.01754 5.10806 5.16045 5.24698 5.35023 5.37195 5.41372 5.45307 5.58976 5.64502 5.84475 5.99423 6.01448 6.12960 6.27084 6.41560 6.50119 6.50941 6.67236 6.79119 6.86572 6.88782 7.48753 7.71123 8.20562 8.43448 9.54506 10.11990 10.46819 11.47105 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.057760 B = 0.002282 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.646236 B =12267.804297 C =12463.154304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.725 5.725 16 C 0.517 3.483 17 O -0.533 6.533 18 C -0.130 4.130 19 C 0.264 3.736 20 O -0.377 6.377 21 C 0.058 3.942 22 C -0.194 4.194 23 C 0.059 3.941 24 O -0.396 6.396 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.021 0.979 29 H 0.022 0.978 30 H 0.384 0.616 31 H 0.255 0.745 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.401 0.599 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 -1.826 28.010 28.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.004 3.996 15 N -0.377 5.377 16 C 0.303 3.697 17 O -0.410 6.410 18 C -0.170 4.170 19 C 0.169 3.831 20 O -0.297 6.297 21 C -0.019 4.019 22 C -0.232 4.232 23 C -0.017 4.017 24 O -0.317 6.317 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.218 0.782 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.236 0.764 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.969 -2.568 27.783 27.919 hybrid contribution 0.090 0.212 -0.723 0.759 sum 1.059 -2.356 27.060 27.183 Atomic orbital electron populations 1.21792 0.94646 1.01959 1.01489 1.21550 0.96740 1.00484 0.94177 0.90526 1.20576 0.96593 0.94226 0.85397 1.42335 1.66968 1.27663 1.00578 1.19196 1.28706 1.05412 0.83681 0.91214 1.24740 1.01054 0.97424 0.97868 1.69648 1.43566 1.16555 1.28599 0.86245 0.78006 0.77694 0.84113 1.21274 1.21715 1.21279 1.21412 1.00072 0.95304 0.82824 1.46014 1.57863 1.28002 1.05803 1.20118 0.79674 0.85619 0.84313 1.90728 1.39712 1.23981 1.86565 1.21471 1.05012 1.00084 0.90384 1.22863 0.95469 0.79526 0.85243 1.88186 1.67080 1.30485 1.43972 1.22615 1.00282 0.94835 0.84124 1.22817 1.03064 0.97612 0.99705 1.22635 0.98006 0.94251 0.86835 1.88054 1.83461 1.45054 1.15138 0.92824 0.91173 0.93858 0.96149 0.95995 0.78202 0.93490 0.91330 0.91390 0.76440 0.86600 0.87168 0.91724 0.92729 0.88314 0.89722 0.89975 0.92740 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.94 37.16 0.33 -1.77 16 2 C -0.11 -1.70 2.46 -90.63 -0.22 -1.92 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.38 5.33 -59.91 -0.32 -18.70 16 6 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 10 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.13 1.77 5.06 -4.04 -0.02 1.75 16 15 N -0.72 -8.40 5.28 -60.29 -0.32 -8.72 16 16 C 0.52 6.55 7.71 -10.98 -0.08 6.47 16 17 O -0.53 -8.84 15.42 -8.88 -0.14 -8.98 16 18 C -0.13 -1.24 5.78 -27.88 -0.16 -1.40 16 19 C 0.26 2.88 2.80 37.16 0.10 2.98 16 20 O -0.38 -4.64 9.77 -64.76 -0.63 -5.28 16 21 C 0.06 0.51 6.96 37.29 0.26 0.77 16 22 C -0.19 -1.28 6.35 -26.47 -0.17 -1.45 16 23 C 0.06 0.42 6.96 37.29 0.26 0.68 16 24 O -0.40 -3.98 10.54 -59.03 -0.62 -4.60 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.22 7.18 -51.93 -0.37 0.84 16 27 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.38 10.02 6.85 -40.82 -0.28 9.74 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 3.66 7.65 -40.82 -0.31 3.34 16 35 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.73 7.96 -51.93 -0.41 0.31 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -34.17 351.39 -8.22 -42.39 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.22 Total: 6.68 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 0.03 Total: 1.88 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.09 Total: -54.91 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -1.39 Total: -18.86 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.17 -8.22 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753611677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.340 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds