Wall clock time and date at job start Tue Mar 31 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99923 * 2 1 4 4 C 1.53000 * 109.46988 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47186 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47117 * 179.97438 * 5 4 3 7 7 O 1.21284 * 119.99998 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99937 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99819 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47077 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.51053 * 304.89489 * 10 9 8 12 12 C 1.53294 * 109.51241 * 184.74321 * 10 9 8 13 13 N 1.47158 * 108.38603 * 187.76702 * 12 10 9 14 14 C 1.36933 * 120.98397 * 230.51426 * 13 12 10 15 15 H 1.07996 * 120.00246 * 26.24938 * 14 13 12 16 16 C 1.38812 * 119.99865 * 206.24903 * 14 13 12 17 17 N 1.31625 * 120.00064 * 16.90499 * 16 14 13 18 18 Si 1.86796 * 120.00334 * 196.90959 * 16 14 13 19 19 H 1.48505 * 109.47316 * 89.99773 * 18 16 14 20 20 H 1.48496 * 109.47484 * 209.99943 * 18 16 14 21 21 H 1.48497 * 109.46910 * 330.00168 * 18 16 14 22 22 C 1.47159 * 118.02872 * 50.53654 * 13 12 10 23 23 C 1.53292 * 108.38431 * 309.46306 * 22 13 12 24 24 O 1.42959 * 109.51592 * 64.99661 * 10 9 8 25 25 H 1.09006 * 109.47211 * 299.99740 * 1 2 3 26 26 H 1.08995 * 109.47600 * 59.99880 * 1 2 3 27 27 H 1.09003 * 109.47569 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47141 * 299.99980 * 3 2 1 29 29 H 1.08993 * 109.47389 * 60.00576 * 3 2 1 30 30 H 1.09002 * 109.47365 * 299.99997 * 4 3 2 31 31 H 1.08999 * 109.47262 * 59.99838 * 4 3 2 32 32 H 1.08999 * 109.47164 * 299.99787 * 5 4 3 33 33 H 1.09005 * 109.46862 * 60.00219 * 5 4 3 34 34 H 0.96994 * 119.99743 * 359.97438 * 8 6 5 35 35 H 1.09002 * 109.47303 * 299.99602 * 9 8 6 36 36 H 1.08999 * 109.47512 * 59.99557 * 9 8 6 37 37 H 1.08999 * 109.68554 * 307.49305 * 12 10 9 38 38 H 1.09001 * 109.68308 * 68.05076 * 12 10 9 39 39 H 0.96999 * 120.00085 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.67709 * 189.74107 * 22 13 12 41 41 H 1.09006 * 109.70863 * 69.20718 * 22 13 12 42 42 H 1.08998 * 109.51510 * 292.38151 * 23 22 13 43 43 H 1.09005 * 109.50912 * 172.22621 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5824 -0.0013 6 6 5.6601 2.4633 -0.0013 7 8 6.1816 1.3684 -0.0004 8 7 6.4240 3.5737 -0.0013 9 6 7.8844 3.4579 -0.0019 10 6 8.5068 4.8556 -0.0024 11 1 8.1176 5.4271 -0.8450 12 6 10.0304 4.7376 -0.1224 13 7 10.6159 6.0743 0.0672 14 6 11.5211 6.5808 -0.8268 15 1 11.5126 6.2444 -1.8531 16 6 12.4496 7.5265 -0.4141 17 7 12.6908 7.6957 0.8688 18 14 13.3566 8.5591 -1.6791 19 1 12.5853 9.7985 -1.9514 20 1 14.6994 8.9167 -1.1554 21 1 13.5062 7.7830 -2.9362 22 6 10.2001 6.8505 1.2463 23 6 8.6682 6.8655 1.2996 24 8 8.1812 5.5238 1.2188 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.8575 0.6436 0.8891 31 1 3.8567 0.6439 -0.8908 32 1 3.8358 3.1230 -0.8913 33 1 3.8365 3.1235 0.8888 34 1 6.0069 4.4493 -0.0017 35 1 8.2064 2.9168 0.8879 36 1 8.2058 2.9172 -0.8920 37 1 10.4077 4.0597 0.6432 38 1 10.2926 4.3589 -1.1104 39 1 13.3399 8.3563 1.1572 40 1 10.5747 7.8709 1.1648 41 1 10.5945 6.3857 2.1500 42 1 8.2804 7.4447 0.4617 43 1 8.3410 7.3157 2.2369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753645922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:14 Heat of formation + Delta-G solvation = -114.966861 kcal Electronic energy + Delta-G solvation = -22544.581709 eV Core-core repulsion = 19011.473110 eV Total energy + Delta-G solvation = -3533.108598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.79582 -38.53359 -38.14779 -34.96169 -34.30796 -33.81977 -31.59387 -30.72595 -28.45717 -27.40427 -26.19241 -25.01815 -23.21629 -22.31203 -21.60131 -20.43669 -19.56296 -17.39721 -16.89473 -16.66117 -16.48185 -16.09734 -15.76018 -15.31744 -15.17402 -14.95116 -14.44151 -14.03650 -13.88539 -13.69668 -13.25166 -13.05357 -12.80220 -12.63828 -12.33538 -12.09013 -12.01233 -11.56034 -11.32463 -11.15795 -11.15099 -10.88822 -10.75489 -10.43912 -10.28250 -10.02322 -10.00572 -9.89208 -9.66581 -9.10268 -8.97270 -8.57764 -6.79376 -5.87561 -3.31493 2.67165 3.07142 3.32063 3.39061 3.40561 3.58220 4.20662 4.40167 4.58406 4.67297 4.79312 4.96551 4.98191 5.08340 5.11482 5.12694 5.21181 5.29115 5.30052 5.37968 5.46778 5.49720 5.77480 5.83764 5.87139 6.01114 6.02968 6.12487 6.26223 6.33545 6.45364 6.52830 6.72614 6.82569 7.06838 7.48019 7.55829 7.67617 7.81929 8.26469 8.29947 9.07920 9.70506 10.27318 11.20534 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.047291 B = 0.002430 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.932598 B =11521.816747 C =11678.629059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.138 4.138 6 C 0.510 3.490 7 O -0.544 6.544 8 N -0.721 5.721 9 C 0.130 3.870 10 C 0.065 3.935 11 H 0.058 0.942 12 C 0.121 3.879 13 N -0.594 5.594 14 C -0.256 4.256 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.907 3.093 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.139 3.861 23 C 0.040 3.960 24 O -0.390 6.390 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.403 0.597 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.255 0.745 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.040 0.960 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.361 -6.902 -1.265 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.178 4.178 6 C 0.296 3.704 7 O -0.422 6.422 8 N -0.373 5.373 9 C 0.006 3.994 10 C 0.005 3.995 11 H 0.076 0.924 12 C -0.006 4.006 13 N -0.318 5.318 14 C -0.385 4.385 15 H 0.087 0.913 16 C -0.197 4.197 17 N -0.547 5.547 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.013 3.987 23 C -0.038 4.038 24 O -0.309 6.309 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.237 0.763 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.804 -7.826 -1.051 22.252 hybrid contribution 0.320 1.534 -0.705 1.718 sum -20.484 -6.292 -1.756 21.500 Atomic orbital electron populations 1.22742 0.81050 1.02790 0.99934 1.87896 1.19659 1.28077 1.95408 1.22567 0.94190 0.84661 1.00167 1.21217 0.91970 0.95961 1.05057 1.21538 0.92367 0.99265 1.04609 1.20539 0.89355 0.84316 0.76160 1.90716 1.75165 1.26629 1.49654 1.45980 1.07364 1.09004 1.74915 1.21415 0.78713 0.96410 1.02893 1.22803 0.97555 0.91484 0.87623 0.92383 1.21450 0.89889 0.89329 0.99943 1.44075 1.48674 1.12003 1.27021 1.19212 1.08417 1.20739 0.90130 0.91287 1.25062 0.96998 1.01663 0.95982 1.70036 1.35547 1.35808 1.13292 0.86222 0.78847 0.80538 0.80759 1.21383 1.21659 1.20360 1.21452 0.88699 0.99204 0.89334 1.23323 0.98130 0.82192 1.00158 1.87787 1.77531 1.27718 1.37892 0.94082 0.94088 0.89625 0.93247 0.93205 0.90222 0.90262 0.88770 0.88673 0.76297 0.90696 0.90179 0.95205 0.91765 0.93470 0.88759 0.95351 0.94117 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.91 10.70 -35.23 -0.38 -4.29 16 3 C 0.06 0.49 5.94 37.16 0.22 0.71 16 4 C -0.10 -1.01 4.87 -26.73 -0.13 -1.14 16 5 C -0.14 -1.17 5.70 -27.88 -0.16 -1.32 16 6 C 0.51 6.54 7.83 -10.98 -0.09 6.46 16 7 O -0.54 -9.22 15.98 5.55 0.09 -9.13 16 8 N -0.72 -9.02 5.50 -60.29 -0.33 -9.35 16 9 C 0.13 1.93 5.35 -4.04 -0.02 1.91 16 10 C 0.07 1.11 2.81 -26.58 -0.07 1.04 16 11 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 12 C 0.12 2.50 6.02 -3.53 -0.02 2.48 16 13 N -0.59 -14.68 3.05 -171.82 -0.52 -15.21 16 14 C -0.26 -6.88 9.65 -15.06 -0.15 -7.02 16 15 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 16 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 17 N -0.90 -25.77 11.14 55.49 0.62 -25.15 16 18 Si 0.91 21.26 29.59 -169.99 -5.03 16.23 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.14 3.26 5.44 -3.53 -0.02 3.24 16 23 C 0.04 0.74 6.98 37.31 0.26 1.00 16 24 O -0.39 -7.12 10.33 -35.23 -0.36 -7.48 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.90 8.10 -51.93 -0.42 0.47 16 31 H 0.08 0.88 8.10 -51.93 -0.42 0.45 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.40 4.22 8.47 -40.82 -0.35 3.87 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -32.57 353.12 -7.13 -39.70 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.39 Total: 0.74 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 0.85 Total: 8.62 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.24 Total: -49.71 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.65 Total: -20.90 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.57 -7.13 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753645922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.262 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds