Wall clock time and date at job start Tue Mar 31 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46649 * 279.52646 * 3 2 1 5 5 N 1.46503 * 109.46528 * 179.97438 * 4 3 2 6 6 C 1.39233 * 125.82067 * 269.97440 * 5 4 3 7 7 C 1.38669 * 133.33992 * 0.02562 * 6 5 4 8 8 C 1.38109 * 119.85492 * 180.02562 * 7 6 5 9 9 C 1.38438 * 120.28418 * 359.96188 * 8 7 6 10 10 C 1.38110 * 120.28735 * 0.02562 * 9 8 7 11 11 C 1.38668 * 119.85122 * 359.97438 * 10 9 8 12 12 N 1.39234 * 133.33943 * 179.97438 * 11 10 9 13 13 C 1.46507 * 125.81820 * 0.05358 * 12 11 10 14 14 C 1.50707 * 109.46600 * 269.99836 * 13 12 11 15 15 H 1.07991 * 120.00228 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99595 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99942 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00160 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46881 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47282 * 119.99740 * 18 16 14 21 21 H 1.48497 * 109.46947 * 240.00235 * 18 16 14 22 22 C 1.34638 * 108.36891 * 180.02562 * 12 11 10 23 23 S 1.71198 * 125.16714 * 180.26276 * 22 12 11 24 24 H 1.08994 * 109.46995 * 159.52957 * 3 2 1 25 25 H 1.09002 * 109.47002 * 39.52654 * 3 2 1 26 26 H 1.08994 * 109.47168 * 60.00417 * 4 3 2 27 27 H 1.08998 * 109.47401 * 300.00245 * 4 3 2 28 28 H 1.08001 * 120.06730 * 0.02562 * 7 6 5 29 29 H 1.07995 * 119.85940 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.85752 * 180.02562 * 9 8 7 31 31 H 1.08005 * 120.07739 * 179.97438 * 10 9 8 32 32 H 1.08999 * 109.46755 * 29.98923 * 13 12 11 33 33 H 1.08997 * 109.47437 * 150.00181 * 13 12 11 34 34 H 0.97005 * 119.99811 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.2379 1.4227 5 7 4.5831 -0.2378 1.4226 6 6 5.3980 -1.3513 1.2363 7 6 5.1372 -2.6945 1.0113 8 6 6.1844 -3.5828 0.8633 9 6 7.4931 -3.1378 0.9380 10 6 7.7629 -1.8019 1.1615 11 6 6.7182 -0.9024 1.3113 12 7 6.6642 0.4698 1.5412 13 6 7.8181 1.3602 1.6903 14 6 8.2137 1.4307 3.1428 15 1 7.6607 0.8689 3.8809 16 6 9.2816 2.2126 3.5291 17 7 9.9553 2.8963 2.6301 18 14 9.7725 2.2995 5.3294 19 1 8.8625 1.4439 6.1324 20 1 11.1693 1.8201 5.4853 21 1 9.6756 3.7041 5.8015 22 6 5.3709 0.8391 1.6025 23 16 4.8130 2.4365 1.8634 24 1 2.9709 0.9635 -0.3594 25 1 2.9717 -0.7919 -0.6541 26 1 2.7552 -1.2008 1.7821 27 1 2.7543 0.5546 2.0767 28 1 4.1174 -3.0452 0.9518 29 1 5.9814 -4.6290 0.6885 30 1 8.3068 -3.8383 0.8209 31 1 8.7853 -1.4584 1.2195 32 1 8.6526 0.9745 1.1047 33 1 7.5558 2.3572 1.3364 34 1 10.7068 3.4461 2.9019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002024089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:55 Heat of formation + Delta-G solvation = 97.552602 kcal Electronic energy + Delta-G solvation = -19596.585451 eV Core-core repulsion = 16621.495174 eV Total energy + Delta-G solvation = -2975.090278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.079 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.33560 -37.66910 -37.16907 -35.88335 -33.22014 -31.97777 -30.36761 -29.75698 -27.96553 -25.19194 -23.68322 -23.34121 -22.08640 -20.61902 -18.14668 -17.68679 -17.35377 -16.84967 -16.53160 -15.47993 -15.42336 -15.07487 -14.50881 -14.46206 -14.05828 -13.94164 -13.69764 -12.96688 -12.81059 -12.69027 -12.36934 -12.17741 -11.84383 -11.66644 -11.36385 -11.28786 -11.06839 -10.88040 -10.73422 -10.58112 -10.31625 -9.52566 -9.05069 -8.65329 -8.31020 -6.99782 -6.87329 -6.27124 -4.34312 0.92918 1.32268 1.98380 2.13100 2.53995 2.56974 2.88609 3.21017 3.22351 3.30231 3.36158 3.67496 3.80422 4.28849 4.40207 4.45972 4.57408 4.88666 4.97588 5.05862 5.07724 5.14414 5.28310 5.34722 5.52689 5.57740 5.73975 5.94521 6.26978 6.39946 6.52425 6.61804 6.80215 6.96777 7.30071 7.32123 7.46776 7.67213 7.81319 8.66088 9.31485 10.80998 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.005705 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.946758 B = 4906.507497 C = 6229.607810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.216 3.784 3 C -0.044 4.044 4 C 0.130 3.870 5 N -0.486 5.486 6 C 0.066 3.934 7 C -0.103 4.103 8 C -0.112 4.112 9 C -0.110 4.110 10 C -0.082 4.082 11 C 0.093 3.907 12 N -0.437 5.437 13 C 0.242 3.758 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.071 3.929 17 N -0.887 5.887 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.279 1.279 22 C 0.497 3.503 23 S -0.614 6.614 24 H 0.125 0.875 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 -14.909 -5.909 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.102 4.102 3 C -0.085 4.085 4 C 0.006 3.994 5 N -0.181 5.181 6 C -0.039 4.039 7 C -0.125 4.125 8 C -0.132 4.132 9 C -0.131 4.131 10 C -0.104 4.104 11 C -0.014 4.014 12 N -0.125 5.125 13 C 0.126 3.874 14 C -0.571 4.571 15 H 0.081 0.919 16 C -0.133 4.133 17 N -0.525 5.525 18 Si 0.733 3.267 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.205 1.205 22 C 0.142 3.858 23 S -0.479 6.479 24 H 0.143 0.857 25 H 0.131 0.869 26 H 0.118 0.882 27 H 0.137 0.863 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.873 -13.504 -5.727 16.647 hybrid contribution 1.154 -0.597 0.874 1.566 sum -6.719 -14.100 -4.853 16.356 Atomic orbital electron populations 1.81247 1.12706 1.08973 1.07744 1.28669 0.94633 0.93150 0.93757 1.19596 0.82293 1.07365 0.99232 1.21557 0.75078 1.05906 0.96859 1.44895 1.06496 1.04994 1.61746 1.18438 0.88498 0.89999 1.07012 1.19981 1.00141 0.88563 1.03847 1.20849 0.91960 0.99212 1.01191 1.20931 0.96991 0.94481 1.00653 1.20325 0.98242 0.91666 1.00125 1.18553 0.93947 0.85178 1.03739 1.46165 1.07091 1.06219 1.53005 1.20089 0.78425 0.89442 0.99449 1.21115 1.14933 1.29790 0.91277 0.91949 1.24843 0.95609 0.94406 0.98420 1.69920 1.20246 1.28671 1.33626 0.86305 0.78120 0.78364 0.83930 1.19648 1.20755 1.20457 1.22857 0.82648 0.92881 0.87430 1.93161 1.80981 1.00728 1.73058 0.85695 0.86904 0.88173 0.86254 0.85386 0.85077 0.84925 0.84267 0.93017 0.90629 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.64 18.54 42.15 0.78 -4.86 16 2 C 0.22 2.24 15.43 -20.76 -0.32 1.92 16 3 C -0.04 -0.37 6.03 -29.51 -0.18 -0.55 16 4 C 0.13 1.35 5.77 -4.04 -0.02 1.33 16 5 N -0.49 -7.03 2.78 -115.46 -0.32 -7.35 16 6 C 0.07 0.89 6.83 -83.81 -0.57 0.32 16 7 C -0.10 -1.01 10.02 -39.47 -0.40 -1.41 16 8 C -0.11 -0.98 10.03 -39.55 -0.40 -1.38 16 9 C -0.11 -1.12 10.03 -39.55 -0.40 -1.52 16 10 C -0.08 -1.13 10.02 -39.47 -0.40 -1.53 16 11 C 0.09 1.54 6.83 -83.81 -0.57 0.96 16 12 N -0.44 -8.89 2.77 -116.74 -0.32 -9.21 16 13 C 0.24 5.82 5.58 -5.19 -0.03 5.79 16 14 C -0.53 -14.10 9.39 -34.44 -0.32 -14.42 16 15 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 17 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 18 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.50 9.71 7.73 -87.16 -0.67 9.03 16 23 S -0.61 -14.04 29.25 -107.50 -3.14 -17.18 16 24 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.12 1.44 7.56 -51.93 -0.39 1.04 16 28 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.14 1.97 8.06 -52.48 -0.42 1.55 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 2.03 7.55 -51.93 -0.39 1.64 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -32.93 322.66 -10.52 -43.44 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -3.71 Total: -2.18 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -4.37 Total: 0.35 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.87 Total: -45.26 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -14.04 SS G_CDS: -3.14 Total: -17.18 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.93 -10.52 -43.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002024089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.996 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds