Wall clock time and date at job start Tue Mar 31 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46649 * 279.52646 * 3 2 1 5 5 N 1.46503 * 109.46528 * 179.97438 * 4 3 2 6 6 C 1.39233 * 125.82067 * 269.97440 * 5 4 3 7 7 C 1.38669 * 133.33992 * 0.02562 * 6 5 4 8 8 C 1.38109 * 119.85492 * 180.02562 * 7 6 5 9 9 C 1.38438 * 120.28418 * 359.96188 * 8 7 6 10 10 C 1.38110 * 120.28735 * 0.02562 * 9 8 7 11 11 C 1.38668 * 119.85122 * 359.97438 * 10 9 8 12 12 N 1.39234 * 133.33943 * 179.97438 * 11 10 9 13 13 C 1.46507 * 125.81820 * 0.05358 * 12 11 10 14 14 C 1.50707 * 109.46600 * 269.99836 * 13 12 11 15 15 H 1.07991 * 120.00228 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99595 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99942 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00160 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46881 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47282 * 119.99740 * 18 16 14 21 21 H 1.48497 * 109.46947 * 240.00235 * 18 16 14 22 22 C 1.34638 * 108.36891 * 180.02562 * 12 11 10 23 23 S 1.71198 * 125.16714 * 180.26276 * 22 12 11 24 24 H 1.08994 * 109.46995 * 159.52957 * 3 2 1 25 25 H 1.09002 * 109.47002 * 39.52654 * 3 2 1 26 26 H 1.08994 * 109.47168 * 60.00417 * 4 3 2 27 27 H 1.08998 * 109.47401 * 300.00245 * 4 3 2 28 28 H 1.08001 * 120.06730 * 0.02562 * 7 6 5 29 29 H 1.07995 * 119.85940 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.85752 * 180.02562 * 9 8 7 31 31 H 1.08005 * 120.07739 * 179.97438 * 10 9 8 32 32 H 1.08999 * 109.46755 * 29.98923 * 13 12 11 33 33 H 1.08997 * 109.47437 * 150.00181 * 13 12 11 34 34 H 0.97005 * 119.99811 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.2379 1.4227 5 7 4.5831 -0.2378 1.4226 6 6 5.3980 -1.3513 1.2363 7 6 5.1372 -2.6945 1.0113 8 6 6.1844 -3.5828 0.8633 9 6 7.4931 -3.1378 0.9380 10 6 7.7629 -1.8019 1.1615 11 6 6.7182 -0.9024 1.3113 12 7 6.6642 0.4698 1.5412 13 6 7.8181 1.3602 1.6903 14 6 8.2137 1.4307 3.1428 15 1 7.6607 0.8689 3.8809 16 6 9.2816 2.2126 3.5291 17 7 9.9553 2.8963 2.6301 18 14 9.7725 2.2995 5.3294 19 1 8.8625 1.4439 6.1324 20 1 11.1693 1.8201 5.4853 21 1 9.6756 3.7041 5.8015 22 6 5.3709 0.8391 1.6025 23 16 4.8130 2.4365 1.8634 24 1 2.9709 0.9635 -0.3594 25 1 2.9717 -0.7919 -0.6541 26 1 2.7552 -1.2008 1.7821 27 1 2.7543 0.5546 2.0767 28 1 4.1174 -3.0452 0.9518 29 1 5.9814 -4.6290 0.6885 30 1 8.3068 -3.8383 0.8209 31 1 8.7853 -1.4584 1.2195 32 1 8.6526 0.9745 1.1047 33 1 7.5558 2.3572 1.3364 34 1 10.7068 3.4461 2.9019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002024089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:55 Heat of formation + Delta-G solvation = 79.575071 kcal Electronic energy + Delta-G solvation = -19597.365016 eV Core-core repulsion = 16621.495174 eV Total energy + Delta-G solvation = -2975.869842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.079 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.59181 -38.61990 -38.21138 -37.13376 -35.04830 -33.15071 -31.46749 -30.80625 -29.62760 -26.57151 -24.85598 -24.81952 -23.25108 -21.81236 -19.19680 -18.78764 -18.74977 -18.56952 -17.72118 -16.87560 -16.73679 -16.18197 -15.87052 -15.57262 -15.05822 -15.00129 -14.94971 -14.42057 -13.89236 -13.71499 -13.59820 -13.32547 -13.26019 -12.93556 -12.76901 -12.71901 -12.46976 -12.36347 -12.13795 -12.03929 -11.97306 -11.26357 -10.73008 -10.20972 -9.37058 -8.75497 -8.52257 -8.30923 -6.48145 -0.20057 0.35414 0.63340 0.88847 1.34817 1.38305 1.40460 1.49616 1.72864 1.74811 1.87057 2.34261 2.75194 2.94138 2.99477 3.38293 3.52049 3.75313 4.04083 4.08133 4.22013 4.26366 4.36645 4.40338 4.62127 4.76234 4.81174 4.83429 4.97734 5.16558 5.40051 5.49258 5.55173 5.56340 5.72779 5.78819 5.83557 6.13816 6.48804 6.56156 7.21033 8.74760 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.005705 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.946758 B = 4906.507497 C = 6229.607810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.246 3.754 3 C -0.030 4.030 4 C 0.121 3.879 5 N -0.460 5.460 6 C 0.062 3.938 7 C -0.086 4.086 8 C -0.089 4.089 9 C -0.092 4.092 10 C -0.107 4.107 11 C 0.045 3.955 12 N -0.448 5.448 13 C 0.263 3.737 14 C -0.542 4.542 15 H 0.048 0.952 16 C 0.025 3.975 17 N -0.917 5.917 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.264 1.264 21 H -0.280 1.280 22 C 0.495 3.505 23 S -0.715 6.715 24 H 0.110 0.890 25 H 0.152 0.848 26 H 0.146 0.854 27 H 0.098 0.902 28 H 0.176 0.824 29 H 0.182 0.818 30 H 0.166 0.834 31 H 0.121 0.879 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.433 -19.935 -6.137 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.071 4.071 3 C -0.071 4.071 4 C -0.001 4.001 5 N -0.153 5.153 6 C -0.042 4.042 7 C -0.107 4.107 8 C -0.109 4.109 9 C -0.112 4.112 10 C -0.129 4.129 11 C -0.060 4.060 12 N -0.136 5.136 13 C 0.145 3.855 14 C -0.580 4.580 15 H 0.066 0.934 16 C -0.176 4.176 17 N -0.555 5.555 18 Si 0.792 3.208 19 H -0.197 1.197 20 H -0.188 1.188 21 H -0.206 1.206 22 C 0.135 3.865 23 S -0.583 6.583 24 H 0.128 0.872 25 H 0.169 0.831 26 H 0.164 0.836 27 H 0.116 0.884 28 H 0.193 0.807 29 H 0.200 0.800 30 H 0.184 0.816 31 H 0.139 0.861 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.349 -18.619 -5.978 21.263 hybrid contribution 1.356 0.636 0.852 1.723 sum -6.994 -17.983 -5.126 19.964 Atomic orbital electron populations 1.81288 1.14146 1.10682 1.09316 1.28746 0.94526 0.91607 0.92254 1.19557 0.80927 1.08032 0.98558 1.21942 0.72573 1.07681 0.97876 1.44943 1.07609 1.03763 1.59027 1.18820 0.86586 0.91030 1.07763 1.20613 1.03003 0.86082 1.01016 1.21505 0.90539 1.01320 0.97494 1.21408 0.99278 0.92821 0.97653 1.20487 0.97050 0.93279 1.02055 1.19077 0.96645 0.83360 1.06884 1.45787 1.06394 1.07993 1.53426 1.19415 0.79586 0.88517 0.98013 1.21238 1.14920 1.29734 0.92118 0.93400 1.25649 0.95571 0.93937 1.02455 1.70009 1.20753 1.29251 1.35477 0.85367 0.78474 0.78058 0.78947 1.19696 1.18838 1.20617 1.22198 0.82935 0.92567 0.88821 1.93189 1.81856 1.05349 1.77900 0.87215 0.83086 0.83615 0.88372 0.80695 0.80047 0.81616 0.86083 0.93553 0.94567 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.96 18.54 20.01 0.37 -11.59 16 2 C 0.25 4.63 15.43 89.44 1.38 6.01 16 3 C -0.03 -0.44 6.03 28.79 0.17 -0.26 16 4 C 0.12 2.25 5.77 86.38 0.50 2.75 16 5 N -0.46 -12.75 2.78 -519.19 -1.44 -14.19 16 6 C 0.06 1.50 6.83 38.41 0.26 1.76 16 7 C -0.09 -1.10 10.02 22.34 0.22 -0.88 16 8 C -0.09 -0.90 10.03 22.29 0.22 -0.68 16 9 C -0.09 -1.41 10.03 22.29 0.22 -1.19 16 10 C -0.11 -2.83 10.02 22.34 0.22 -2.61 16 11 C 0.05 1.47 6.83 38.41 0.26 1.73 16 12 N -0.45 -19.14 2.77 -523.24 -1.45 -20.59 16 13 C 0.26 13.58 5.58 85.63 0.48 14.06 16 14 C -0.54 -30.16 9.39 25.60 0.24 -29.92 16 15 H 0.05 2.74 7.81 -2.92 -0.02 2.72 16 16 C 0.03 1.38 5.46 84.65 0.46 1.84 16 17 N -0.92 -52.72 13.29 21.45 0.28 -52.44 16 18 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 C 0.49 20.16 7.73 179.14 1.39 21.55 16 23 S -0.72 -35.37 29.25 -56.49 -1.65 -37.02 16 24 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.15 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 2.36 7.56 -2.39 -0.02 2.34 16 28 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 29 H 0.18 0.29 8.06 -2.91 -0.02 0.26 16 30 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.04 2.13 7.55 -2.39 -0.02 2.12 16 34 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -81.03 322.66 5.29 -75.74 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: 1.12 Total: -0.04 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.04 Total: 14.17 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -2.24 Total: -98.80 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -35.37 SS G_CDS: -1.65 Total: -37.02 kcal Total: -81.03 5.29 -75.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002024089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.314 kcal (2) G-P(sol) polarization free energy of solvation -81.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds