Wall clock time and date at job start Tue Mar 31 2020 02:49:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50689 * 1
3 3 C 1.40372 * 126.64734 * 2 1
4 4 C 1.35125 * 107.11618 * 179.83578 * 3 2 1
5 5 O 1.33934 * 108.77337 * 0.43120 * 4 3 2
6 6 C 1.34916 * 109.38489 * 359.72297 * 5 4 3
7 7 C 1.46622 * 125.99377 * 179.97438 * 6 5 4
8 8 O 1.21708 * 120.00388 * 180.02562 * 7 6 5
9 9 N 1.34779 * 119.99685 * 0.03097 * 7 6 5
10 10 C 1.39889 * 119.99771 * 174.78605 * 9 7 6
11 11 C 1.38948 * 120.00938 * 326.12274 * 10 9 7
12 12 C 1.37989 * 119.99852 * 179.74178 * 11 10 9
13 13 C 1.38911 * 120.00459 * 0.53535 * 12 11 10
14 14 O 1.35784 * 119.99533 * 179.69823 * 13 12 11
15 15 C 1.34808 * 116.99746 * 185.92978 * 14 13 12
16 16 H 1.07996 * 120.00400 * 5.41058 * 15 14 13
17 17 C 1.38636 * 119.99609 * 185.41487 * 15 14 13
18 18 N 1.31576 * 119.99738 * 180.02562 * 17 15 14
19 19 Si 1.86795 * 120.00094 * 359.97438 * 17 15 14
20 20 H 1.48508 * 109.46833 * 90.00349 * 19 17 15
21 21 H 1.48502 * 109.47312 * 210.00056 * 19 17 15
22 22 H 1.48493 * 109.47243 * 330.00467 * 19 17 15
23 23 C 1.38908 * 120.01013 * 359.71761 * 13 12 11
24 24 C 1.38001 * 119.99995 * 0.03062 * 23 13 12
25 25 H 1.08995 * 109.47494 * 269.68624 * 1 2 3
26 26 H 1.09008 * 109.47172 * 149.68444 * 1 2 3
27 27 H 1.09007 * 109.47352 * 29.69162 * 1 2 3
28 28 H 1.08005 * 126.43720 * 0.02562 * 3 2 1
29 29 H 1.08003 * 125.61484 * 180.13833 * 4 3 2
30 30 H 0.97002 * 120.00281 * 354.78902 * 9 7 6
31 31 H 1.08001 * 119.99229 * 359.97438 * 11 10 9
32 32 H 1.08003 * 119.99631 * 180.25334 * 12 11 10
33 33 H 0.96995 * 120.00183 * 179.97438 * 18 17 15
34 34 H 1.07996 * 119.99986 * 180.02562 * 23 13 12
35 35 H 1.07997 * 120.00130 * 179.97438 * 24 23 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3448 1.1262 0.0000
4 6 3.6183 0.6745 0.0037
5 8 3.6006 -0.6647 -0.0036
6 6 2.3221 -1.0957 -0.0059
7 6 1.8845 -2.4950 -0.0141
8 8 0.6969 -2.7613 -0.0159
9 7 2.7974 -3.4865 -0.0194
10 6 2.3836 -4.8189 0.0830
11 6 1.2707 -5.1440 0.8487
12 6 0.8595 -6.4577 0.9452
13 6 1.5646 -7.4565 0.2858
14 8 1.1634 -8.7498 0.3859
15 6 1.9591 -9.6825 -0.1749
16 1 2.9107 -9.3968 -0.5980
17 6 1.5555 -11.0084 -0.2085
18 7 2.3322 -11.9188 -0.7554
19 14 -0.0903 -11.5026 0.5239
20 1 -1.1430 -11.4146 -0.5199
21 1 -0.0090 -12.8969 1.0284
22 1 -0.4274 -10.5893 1.6451
23 6 2.6804 -7.1324 -0.4755
24 6 3.0888 -5.8181 -0.5764
25 1 -0.3634 -0.0056 1.0276
26 1 -0.3634 -0.8872 -0.5188
27 1 -0.3634 0.8928 -0.5091
28 1 2.0305 2.1596 0.0004
29 1 4.5045 1.2917 0.0068
30 1 3.7414 -3.2763 -0.0942
31 1 0.7253 -4.3680 1.3653
32 1 -0.0080 -6.7098 1.5371
33 1 2.0501 -12.8465 -0.7786
34 1 3.2282 -7.9090 -0.9884
35 1 3.9565 -5.5662 -1.1680
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000025320734.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:49:37
Heat of formation + Delta-G solvation = -15.637263 kcal
Electronic energy + Delta-G solvation = -21218.326817 eV
Core-core repulsion = 17763.282636 eV
Total energy + Delta-G solvation = -3455.044181 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 287.099 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-42.94655 -40.08842 -38.79409 -36.72075 -34.60690 -33.85457 -32.35236 -30.77823
-30.34592 -28.64870 -27.35253 -25.28181 -23.36513 -22.39814 -21.84671 -20.73506
-19.97985 -18.45190 -17.81241 -17.46213 -16.67560 -16.58754 -16.18013 -14.96099
-14.65362 -14.62679 -13.99137 -13.86883 -13.71845 -13.57210 -13.26763 -13.23770
-12.83062 -12.75855 -12.36756 -12.27257 -12.03361 -11.81326 -11.71660 -10.96053
-10.78549 -10.19006 -10.09567 -9.97045 -9.73515 -9.35851 -8.89430 -8.76895
-8.33076 -7.08869 -6.43495 -4.09073 0.81769 1.96930 2.07162 2.18891
2.50088 3.12967 3.21600 3.22948 3.27129 3.41304 4.23357 4.41520
4.46936 4.52020 4.72095 4.87312 5.07376 5.21443 5.27242 5.45101
5.51847 5.55251 5.66322 5.78881 5.90222 6.01419 6.06983 6.10860
6.22806 6.57928 6.61577 6.71452 6.90675 7.02330 7.19822 7.53164
7.55751 7.75436 7.99335 8.14550 8.91760 9.53890 10.64022
Molecular weight = 287.10amu
Principal moments of inertia in cm(-1)
A = 0.043290 B = 0.003061 C = 0.002896
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 646.650214 B = 9146.412332 C = 9667.022109
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.096 4.096
2 C -0.088 4.088
3 C -0.225 4.225
4 C -0.007 4.007
5 O -0.164 6.164
6 C -0.081 4.081
7 C 0.595 3.405
8 O -0.504 6.504
9 N -0.649 5.649
10 C 0.042 3.958
11 C -0.069 4.069
12 C -0.176 4.176
13 C 0.153 3.847
14 O -0.215 6.215
15 C -0.389 4.389
16 H 0.106 0.894
17 C 0.063 3.937
18 N -0.879 5.879
19 Si 0.906 3.094
20 H -0.273 1.273
21 H -0.282 1.282
22 H -0.259 1.259
23 C -0.205 4.205
24 C -0.088 4.088
25 H 0.074 0.926
26 H 0.089 0.911
27 H 0.066 0.934
28 H 0.155 0.845
29 H 0.210 0.790
30 H 0.407 0.593
31 H 0.127 0.873
32 H 0.122 0.878
33 H 0.280 0.720
34 H 0.139 0.861
35 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.279 23.817 1.719 23.987
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.091 4.091
3 C -0.245 4.245
4 C -0.076 4.076
5 O -0.060 6.060
6 C -0.133 4.133
7 C 0.382 3.618
8 O -0.381 6.381
9 N -0.293 5.293
10 C -0.050 4.050
11 C -0.089 4.089
12 C -0.196 4.196
13 C 0.101 3.899
14 O -0.119 6.119
15 C -0.465 4.465
16 H 0.124 0.876
17 C -0.140 4.140
18 N -0.516 5.516
19 Si 0.731 3.269
20 H -0.199 1.199
21 H -0.208 1.208
22 H -0.183 1.183
23 C -0.225 4.225
24 C -0.108 4.108
25 H 0.093 0.907
26 H 0.107 0.893
27 H 0.085 0.915
28 H 0.173 0.827
29 H 0.226 0.774
30 H 0.243 0.757
31 H 0.144 0.856
32 H 0.140 0.860
33 H 0.090 0.910
34 H 0.156 0.844
35 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges 1.512 23.066 1.781 23.184
hybrid contribution 0.100 0.082 0.045 0.137
sum 1.613 23.148 1.826 23.276
Atomic orbital electron populations
1.20446 0.88123 1.03704 1.03004 1.20664 0.97761 0.90922 0.99754
1.21752 0.92467 1.00149 1.10083 1.24347 0.99955 0.80633 1.02702
1.84063 1.28414 1.22711 1.70802 1.21911 0.81455 0.94773 1.15155
1.16535 0.85911 0.81667 0.77659 1.90869 1.15554 1.81858 1.49825
1.43111 1.09894 1.04637 1.71626 1.17264 1.00921 0.81869 1.04947
1.20599 0.95816 0.95481 0.96968 1.20106 1.02982 0.90857 1.05613
1.19167 0.92617 0.84777 0.93358 1.83599 1.47661 1.11804 1.68870
1.20759 1.01106 0.86486 1.38108 0.87621 1.24475 0.99204 0.94301
0.96033 1.69652 1.37375 1.02345 1.42276 0.86174 0.82479 0.77805
0.80442 1.19857 1.20778 1.18254 1.21104 1.00338 0.96185 1.04847
1.20541 0.99815 0.92118 0.98370 0.90726 0.89266 0.91531 0.82696
0.77372 0.75746 0.85560 0.85972 0.91015 0.84365 0.86733
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.99 9.82 36.00 0.35 -0.64 16
2 C -0.09 -0.99 6.20 -104.43 -0.65 -1.64 16
3 C -0.23 -1.88 10.83 -39.89 -0.43 -2.31 16
4 C -0.01 -0.05 12.08 29.63 0.36 0.31 16
5 O -0.16 -1.72 10.41 4.98 0.05 -1.66 16
6 C -0.08 -1.02 7.13 -36.80 -0.26 -1.28 16
7 C 0.60 8.89 7.52 -12.88 -0.10 8.80 16
8 O -0.50 -8.81 12.45 5.18 0.06 -8.75 16
9 N -0.65 -9.30 5.33 -11.02 -0.06 -9.36 16
10 C 0.04 0.74 6.27 -83.65 -0.52 0.21 16
11 C -0.07 -1.28 8.64 -39.41 -0.34 -1.63 16
12 C -0.18 -3.59 9.98 -39.42 -0.39 -3.99 16
13 C 0.15 3.53 6.65 -39.08 -0.26 3.27 16
14 O -0.21 -5.63 8.58 0.01 0.00 -5.63 16
15 C -0.39 -10.85 9.90 30.88 0.31 -10.54 16
16 H 0.11 2.98 5.52 -52.49 -0.29 2.69 16
17 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16
18 N -0.88 -25.21 13.96 55.48 0.77 -24.43 16
19 Si 0.91 21.63 28.62 -169.99 -4.86 16.77 16
20 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16
21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16
22 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16
23 C -0.21 -4.33 9.12 -39.42 -0.36 -4.69 16
24 C -0.09 -1.57 9.96 -39.41 -0.39 -1.96 16
25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
26 H 0.09 1.10 6.44 -51.92 -0.33 0.77 16
27 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16
28 H 0.16 0.89 8.06 -52.48 -0.42 0.46 16
29 H 0.21 0.62 8.06 -52.48 -0.42 0.19 16
30 H 0.41 4.65 8.58 -40.82 -0.35 4.30 16
31 H 0.13 2.26 6.45 -52.49 -0.34 1.92 16
32 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16
33 H 0.28 7.41 8.31 -40.82 -0.34 7.08 16
34 H 0.14 3.03 5.71 -52.49 -0.30 2.73 16
35 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16
LS Contribution 309.79 15.07 4.67 4.67
Total: -1.00 -31.56 309.79 -5.44 -37.00
By element:
Atomic # 1 Polarization: 9.11 SS G_CDS: -3.28 Total: 5.82 kcal
Atomic # 6 Polarization: -11.63 SS G_CDS: -2.79 Total: -14.42 kcal
Atomic # 7 Polarization: -34.51 SS G_CDS: 0.72 Total: -33.80 kcal
Atomic # 8 Polarization: -16.16 SS G_CDS: 0.12 Total: -16.04 kcal
Atomic # 14 Polarization: 21.63 SS G_CDS: -4.86 Total: 16.77 kcal
Total LS contribution 4.67 Total: 4.67 kcal
Total: -31.56 -5.44 -37.00 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000025320734.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.363 kcal
(2) G-P(sol) polarization free energy of solvation -31.563 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.201 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds