Wall clock time and date at job start Tue Mar 31 2020 02:49:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50689 * 1
3 3 C 1.40372 * 126.64734 * 2 1
4 4 C 1.35125 * 107.11618 * 179.83578 * 3 2 1
5 5 O 1.33934 * 108.77337 * 0.43120 * 4 3 2
6 6 C 1.34916 * 109.38489 * 359.72297 * 5 4 3
7 7 C 1.46622 * 125.99377 * 179.97438 * 6 5 4
8 8 O 1.21708 * 120.00388 * 180.02562 * 7 6 5
9 9 N 1.34779 * 119.99685 * 0.03097 * 7 6 5
10 10 C 1.39889 * 119.99771 * 174.78605 * 9 7 6
11 11 C 1.38948 * 120.00938 * 326.12274 * 10 9 7
12 12 C 1.37989 * 119.99852 * 179.74178 * 11 10 9
13 13 C 1.38911 * 120.00459 * 0.53535 * 12 11 10
14 14 O 1.35784 * 119.99533 * 179.69823 * 13 12 11
15 15 C 1.34808 * 116.99746 * 185.92978 * 14 13 12
16 16 H 1.07996 * 120.00400 * 5.41058 * 15 14 13
17 17 C 1.38636 * 119.99609 * 185.41487 * 15 14 13
18 18 N 1.31576 * 119.99738 * 180.02562 * 17 15 14
19 19 Si 1.86795 * 120.00094 * 359.97438 * 17 15 14
20 20 H 1.48508 * 109.46833 * 90.00349 * 19 17 15
21 21 H 1.48502 * 109.47312 * 210.00056 * 19 17 15
22 22 H 1.48493 * 109.47243 * 330.00467 * 19 17 15
23 23 C 1.38908 * 120.01013 * 359.71761 * 13 12 11
24 24 C 1.38001 * 119.99995 * 0.03062 * 23 13 12
25 25 H 1.08995 * 109.47494 * 269.68624 * 1 2 3
26 26 H 1.09008 * 109.47172 * 149.68444 * 1 2 3
27 27 H 1.09007 * 109.47352 * 29.69162 * 1 2 3
28 28 H 1.08005 * 126.43720 * 0.02562 * 3 2 1
29 29 H 1.08003 * 125.61484 * 180.13833 * 4 3 2
30 30 H 0.97002 * 120.00281 * 354.78902 * 9 7 6
31 31 H 1.08001 * 119.99229 * 359.97438 * 11 10 9
32 32 H 1.08003 * 119.99631 * 180.25334 * 12 11 10
33 33 H 0.96995 * 120.00183 * 179.97438 * 18 17 15
34 34 H 1.07996 * 119.99986 * 180.02562 * 23 13 12
35 35 H 1.07997 * 120.00130 * 179.97438 * 24 23 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3448 1.1262 0.0000
4 6 3.6183 0.6745 0.0037
5 8 3.6006 -0.6647 -0.0036
6 6 2.3221 -1.0957 -0.0059
7 6 1.8845 -2.4950 -0.0141
8 8 0.6969 -2.7613 -0.0159
9 7 2.7974 -3.4865 -0.0194
10 6 2.3836 -4.8189 0.0830
11 6 1.2707 -5.1440 0.8487
12 6 0.8595 -6.4577 0.9452
13 6 1.5646 -7.4565 0.2858
14 8 1.1634 -8.7498 0.3859
15 6 1.9591 -9.6825 -0.1749
16 1 2.9107 -9.3968 -0.5980
17 6 1.5555 -11.0084 -0.2085
18 7 2.3322 -11.9188 -0.7554
19 14 -0.0903 -11.5026 0.5239
20 1 -1.1430 -11.4146 -0.5199
21 1 -0.0090 -12.8969 1.0284
22 1 -0.4274 -10.5893 1.6451
23 6 2.6804 -7.1324 -0.4755
24 6 3.0888 -5.8181 -0.5764
25 1 -0.3634 -0.0056 1.0276
26 1 -0.3634 -0.8872 -0.5188
27 1 -0.3634 0.8928 -0.5091
28 1 2.0305 2.1596 0.0004
29 1 4.5045 1.2917 0.0068
30 1 3.7414 -3.2763 -0.0942
31 1 0.7253 -4.3680 1.3653
32 1 -0.0080 -6.7098 1.5371
33 1 2.0501 -12.8465 -0.7786
34 1 3.2282 -7.9090 -0.9884
35 1 3.9565 -5.5662 -1.1680
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000025320734.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:49:36
Heat of formation + Delta-G solvation = -36.108976 kcal
Electronic energy + Delta-G solvation = -21219.214537 eV
Core-core repulsion = 17763.282636 eV
Total energy + Delta-G solvation = -3455.931901 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 287.099 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-43.69919 -41.47359 -40.40682 -38.30412 -35.75022 -34.91483 -34.36440 -31.95290
-31.61665 -29.95086 -28.45573 -27.14657 -24.48437 -23.97678 -22.85764 -21.96100
-21.06675 -19.87710 -19.25908 -19.15969 -18.10648 -17.44616 -17.05674 -16.59305
-16.13044 -15.84281 -15.68360 -15.47827 -15.22038 -14.62364 -14.45009 -14.19249
-14.09237 -14.01747 -13.88937 -13.53165 -13.49147 -13.34238 -12.81689 -12.73090
-12.52153 -11.98542 -11.50091 -11.36800 -11.05341 -10.72365 -10.65315 -9.91624
-9.66359 -8.71303 -8.49579 -6.20696 -0.10806 0.45978 0.55487 1.32889
1.36047 1.42251 1.53212 1.63959 2.02474 2.15740 2.29124 2.74547
3.07468 3.08860 3.67076 3.80318 3.93071 4.01005 4.06610 4.42941
4.51560 4.51913 4.61779 4.66030 4.76478 4.77629 5.00580 5.10670
5.11468 5.22655 5.30500 5.41688 5.46872 5.51293 5.73543 5.82815
5.89789 6.14697 6.39048 6.84942 6.96172 7.58283 8.61747
Molecular weight = 287.10amu
Principal moments of inertia in cm(-1)
A = 0.043290 B = 0.003061 C = 0.002896
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 646.650214 B = 9146.412332 C = 9667.022109
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.097 4.097
2 C -0.089 4.089
3 C -0.236 4.236
4 C 0.019 3.981
5 O -0.171 6.171
6 C -0.119 4.119
7 C 0.596 3.404
8 O -0.536 6.536
9 N -0.644 5.644
10 C 0.069 3.931
11 C -0.073 4.073
12 C -0.172 4.172
13 C 0.117 3.883
14 O -0.242 6.242
15 C -0.398 4.398
16 H 0.086 0.914
17 C 0.012 3.988
18 N -0.921 5.921
19 Si 0.967 3.033
20 H -0.268 1.268
21 H -0.267 1.267
22 H -0.263 1.263
23 C -0.212 4.212
24 C -0.083 4.083
25 H 0.078 0.922
26 H 0.063 0.937
27 H 0.090 0.910
28 H 0.184 0.816
29 H 0.258 0.742
30 H 0.424 0.576
31 H 0.137 0.863
32 H 0.132 0.868
33 H 0.285 0.715
34 H 0.123 0.877
35 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.781 27.688 2.088 27.906
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.092 4.092
3 C -0.255 4.255
4 C -0.050 4.050
5 O -0.067 6.067
6 C -0.170 4.170
7 C 0.386 3.614
8 O -0.416 6.416
9 N -0.289 5.289
10 C -0.025 4.025
11 C -0.093 4.093
12 C -0.192 4.192
13 C 0.067 3.933
14 O -0.149 6.149
15 C -0.474 4.474
16 H 0.103 0.897
17 C -0.187 4.187
18 N -0.562 5.562
19 Si 0.789 3.211
20 H -0.193 1.193
21 H -0.192 1.192
22 H -0.187 1.187
23 C -0.232 4.232
24 C -0.103 4.103
25 H 0.096 0.904
26 H 0.082 0.918
27 H 0.109 0.891
28 H 0.201 0.799
29 H 0.274 0.726
30 H 0.262 0.738
31 H 0.155 0.845
32 H 0.150 0.850
33 H 0.094 0.906
34 H 0.141 0.859
35 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 2.046 26.999 2.150 27.161
hybrid contribution 0.067 -0.592 -0.080 0.601
sum 2.113 26.407 2.069 26.572
Atomic orbital electron populations
1.20455 0.88099 1.03645 1.03171 1.21035 0.98218 0.91793 0.98141
1.22113 0.92269 1.00706 1.10416 1.25389 1.01471 0.79518 0.98628
1.84055 1.27213 1.24357 1.71058 1.21380 0.82792 0.93569 1.19264
1.16853 0.85431 0.82721 0.76385 1.90852 1.16863 1.82728 1.51128
1.43050 1.10965 1.03173 1.71720 1.17389 0.99363 0.83416 1.02291
1.20778 0.96416 0.94885 0.97249 1.20296 1.02949 0.90969 1.04962
1.19600 0.94169 0.84317 0.95210 1.83543 1.48012 1.12730 1.70640
1.20725 1.01001 0.87460 1.38213 0.89650 1.25237 1.02577 0.94214
0.96662 1.69727 1.39199 1.02849 1.44413 0.85265 0.78397 0.77870
0.79520 1.19310 1.19156 1.18685 1.21145 0.99896 0.97439 1.04673
1.20793 1.00759 0.90579 0.98145 0.90380 0.91777 0.89130 0.79882
0.72636 0.73782 0.84526 0.85014 0.90563 0.85893 0.83051
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.85 9.82 71.23 0.70 -1.15 16
2 C -0.09 -1.77 6.20 -19.74 -0.12 -1.89 16
3 C -0.24 -2.95 10.83 22.07 0.24 -2.71 16
4 C 0.02 0.19 12.08 67.10 0.81 1.00 16
5 O -0.17 -2.98 10.41 -5.09 -0.05 -3.03 16
6 C -0.12 -2.72 7.13 24.07 0.17 -2.55 16
7 C 0.60 16.99 7.52 86.43 0.65 17.64 16
8 O -0.54 -18.44 12.45 -4.37 -0.05 -18.50 16
9 N -0.64 -17.13 5.33 -306.99 -1.64 -18.77 16
10 C 0.07 2.29 6.27 38.20 0.24 2.53 16
11 C -0.07 -2.68 8.64 22.38 0.19 -2.49 16
12 C -0.17 -7.07 9.98 22.37 0.22 -6.85 16
13 C 0.12 5.52 6.65 22.59 0.15 5.67 16
14 O -0.24 -13.19 8.58 -22.89 -0.20 -13.39 16
15 C -0.40 -23.26 9.90 67.92 0.67 -22.58 16
16 H 0.09 5.15 5.52 -2.91 -0.02 5.14 16
17 C 0.01 0.68 5.49 84.83 0.47 1.14 16
18 N -0.92 -54.77 13.96 21.61 0.30 -54.46 16
19 Si 0.97 45.67 28.62 68.60 1.96 47.64 16
20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16
21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
22 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16
23 C -0.21 -9.14 9.12 22.37 0.20 -8.94 16
24 C -0.08 -2.84 9.96 22.38 0.22 -2.62 16
25 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
26 H 0.06 1.56 6.44 -2.38 -0.02 1.55 16
27 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16
28 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16
29 H 0.26 -0.16 8.06 -2.91 -0.02 -0.18 16
30 H 0.42 8.53 8.58 -92.71 -0.80 7.73 16
31 H 0.14 4.76 6.45 -2.91 -0.02 4.75 16
32 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16
33 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16
34 H 0.12 5.68 5.71 -2.91 -0.02 5.66 16
35 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16
Total: -1.00 -71.91 309.79 5.50 -66.42
By element:
Atomic # 1 Polarization: 17.52 SS G_CDS: 0.36 Total: 17.88 kcal
Atomic # 6 Polarization: -28.61 SS G_CDS: 4.82 Total: -23.79 kcal
Atomic # 7 Polarization: -71.90 SS G_CDS: -1.34 Total: -73.23 kcal
Atomic # 8 Polarization: -34.61 SS G_CDS: -0.30 Total: -34.91 kcal
Atomic # 14 Polarization: 45.67 SS G_CDS: 1.96 Total: 47.64 kcal
Total: -71.91 5.50 -66.42 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000025320734.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.308 kcal
(2) G-P(sol) polarization free energy of solvation -71.915 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.607 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.498 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.417 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.109 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds