Wall clock time and date at job start Tue Mar 31 2020 02:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47064 * 340.45729 * 3 2 1 5 5 C 1.34777 * 120.00043 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99831 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00038 * 180.02562 * 5 4 3 8 8 O 1.45201 * 109.46944 * 180.02562 * 7 5 4 9 9 C 1.34804 * 116.99925 * 180.02562 * 8 7 5 10 10 O 1.21526 * 120.00158 * 359.97438 * 9 8 7 11 11 C 1.47288 * 120.00213 * 180.02562 * 9 8 7 12 12 C 1.39296 * 120.28603 * 354.83939 * 11 9 8 13 13 C 1.38205 * 120.08627 * 180.27692 * 12 11 9 14 14 C 1.38842 * 120.68093 * 359.73704 * 13 12 11 15 15 C 1.37598 * 120.58249 * 0.02562 * 14 13 12 16 16 C 1.40703 * 119.88779 * 0.02562 * 15 14 13 17 17 C 1.40861 * 120.33362 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99855 * 145.73459 * 17 16 15 19 19 C 1.40300 * 119.99911 * 325.74373 * 17 16 15 20 20 N 1.30607 * 120.00073 * 339.67884 * 19 17 16 21 21 Si 1.86803 * 119.99808 * 159.68404 * 19 17 16 22 22 H 1.48497 * 109.46756 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.46906 * 299.99473 * 21 19 17 24 24 H 1.48494 * 109.47569 * 59.99623 * 21 19 17 25 25 H 4.40642 * 5.51406 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.47057 * 220.46085 * 3 2 1 27 27 H 1.09000 * 109.46880 * 100.45752 * 3 2 1 28 28 H 0.97003 * 119.99851 * 359.97438 * 4 3 2 29 29 H 1.08999 * 109.46912 * 60.00531 * 7 5 4 30 30 H 1.09000 * 109.47278 * 300.00043 * 7 5 4 31 31 H 1.08000 * 119.95653 * 0.02562 * 12 11 9 32 32 H 1.07997 * 119.65882 * 179.75950 * 13 12 11 33 33 H 1.07994 * 119.70815 * 180.02562 * 14 13 12 34 34 H 1.07997 * 120.05357 * 180.02562 * 15 14 13 35 35 H 0.97001 * 119.99997 * 355.29575 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3008 0.4620 5 6 4.4601 -1.5325 0.5439 6 8 5.2479 -0.6634 0.2356 7 6 4.9630 -2.8714 1.0187 8 8 6.4150 -2.8707 1.0188 9 6 7.0275 -4.0027 1.4196 10 8 6.3661 -4.9637 1.7601 11 6 8.4984 -4.0745 1.4460 12 6 9.2623 -3.0170 0.9576 13 6 10.6422 -3.0911 0.9791 14 6 11.2835 -4.2117 1.4897 15 6 10.5564 -5.2702 1.9837 16 6 9.1502 -5.2208 1.9726 17 6 8.3965 -6.2994 2.4754 18 1 7.4586 -6.1149 2.9780 19 6 8.8644 -7.6133 2.3235 20 7 9.7525 -7.8883 1.4062 21 14 8.2170 -8.9694 3.4332 22 1 8.8652 -10.2558 3.0724 23 1 8.5249 -8.6404 4.8482 24 1 6.7469 -9.0900 3.2616 25 1 -1.0498 -0.0003 0.0003 26 1 3.0090 0.7827 0.6669 27 1 3.0092 0.1874 -1.0106 28 1 2.5049 -1.9958 0.7090 29 1 4.5998 -3.6532 0.3517 30 1 4.6001 -3.0584 2.0293 31 1 8.7755 -2.1396 0.5580 32 1 11.2276 -2.2688 0.5952 33 1 12.3627 -4.2528 1.4992 34 1 11.0641 -6.1375 2.3792 35 1 10.0381 -7.1996 0.7856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027370864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:12 Heat of formation + Delta-G solvation = -68.680453 kcal Electronic energy + Delta-G solvation = -21187.716036 eV Core-core repulsion = 17730.371730 eV Total energy + Delta-G solvation = -3457.344306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.099 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53487 -40.63982 -39.25083 -37.19191 -36.54621 -35.84624 -33.70689 -32.17933 -31.37219 -30.36975 -27.66793 -27.02928 -24.56515 -22.94818 -21.94875 -21.65486 -20.04513 -19.72111 -18.69344 -17.99209 -17.69036 -17.43757 -16.84452 -16.51934 -16.42297 -15.94532 -15.64416 -15.27142 -14.97022 -14.64010 -14.45490 -14.29653 -14.04199 -13.74340 -13.52385 -12.99284 -12.73895 -12.52123 -12.09398 -11.96075 -11.87994 -11.76573 -11.61856 -11.53298 -11.09917 -10.99088 -10.80486 -10.29130 -9.74584 -9.58678 -9.22751 -6.57447 0.19072 0.86823 1.06550 1.31002 1.49642 1.63603 1.79687 1.79761 1.82312 1.87880 2.29916 2.57651 2.66091 3.29841 3.44378 3.54716 4.02251 4.03781 4.20923 4.28739 4.41592 4.44618 4.48406 4.71086 4.87438 4.96643 5.03755 5.10752 5.28633 5.41683 5.58101 5.66287 5.79618 5.90415 6.12600 6.23770 6.25732 6.53833 6.66938 6.76942 6.94121 7.10201 7.95714 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.019585 B = 0.003721 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.340299 B = 7523.273506 C = 8831.281780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.251 4.251 3 C 0.233 3.767 4 N -0.709 5.709 5 C 0.528 3.472 6 O -0.557 6.557 7 C 0.044 3.956 8 O -0.353 6.353 9 C 0.507 3.493 10 O -0.535 6.535 11 C -0.279 4.279 12 C -0.028 4.028 13 C -0.248 4.248 14 C -0.061 4.061 15 C -0.221 4.221 16 C 0.101 3.899 17 C -0.502 4.502 18 H 0.087 0.913 19 C 0.001 3.999 20 N -0.803 5.803 21 Si 1.118 2.882 22 H -0.265 1.265 23 H -0.258 1.258 24 H -0.266 1.266 25 H 0.256 0.744 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.420 0.580 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.100 0.900 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.785 9.035 -0.980 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.251 4.251 3 C 0.111 3.889 4 N -0.364 5.364 5 C 0.313 3.687 6 O -0.435 6.435 7 C -0.034 4.034 8 O -0.270 6.270 9 C 0.358 3.642 10 O -0.428 6.428 11 C -0.282 4.282 12 C -0.046 4.046 13 C -0.267 4.267 14 C -0.080 4.080 15 C -0.240 4.240 16 C 0.097 3.903 17 C -0.528 4.528 18 H 0.105 0.895 19 C -0.216 4.216 20 N -0.426 5.426 21 Si 0.934 3.066 22 H -0.189 1.189 23 H -0.182 1.182 24 H -0.191 1.191 25 H 0.272 0.728 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.257 0.743 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.118 0.882 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.221 7.799 -0.816 15.372 hybrid contribution -0.586 1.355 -0.436 1.540 sum -13.807 9.154 -1.252 16.613 Atomic orbital electron populations 1.25878 0.96665 0.95105 0.98130 1.22871 0.94310 1.04783 1.03170 1.18032 0.84140 0.85209 1.01509 1.45658 1.05664 1.17084 1.68036 1.20087 0.82748 0.88421 0.77414 1.90738 1.56312 1.47079 1.49348 1.22725 0.79323 0.96224 1.05078 1.86610 1.21281 1.39142 1.80004 1.21312 0.89591 0.79446 0.73840 1.90716 1.67068 1.37239 1.47735 1.18998 0.87805 1.02117 1.19231 1.21217 0.94509 0.95614 0.93248 1.20831 0.93634 1.00481 1.11712 1.21227 0.99701 0.92652 0.94379 1.21213 0.93203 1.00316 1.09274 1.17826 0.92647 0.91986 0.87856 1.21193 1.07664 0.93099 1.30880 0.89471 1.28596 0.92434 1.02842 0.97772 1.70493 1.22093 1.38894 1.11107 0.83002 0.76822 0.72206 0.74576 1.18920 1.18219 1.19078 0.72820 0.88997 0.89045 0.74317 0.87044 0.86860 0.86068 0.84721 0.84953 0.88199 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 19.25 74.32 1.43 -0.06 16 2 C -0.25 -3.78 13.46 31.13 0.42 -3.36 16 3 C 0.23 4.13 6.15 84.57 0.52 4.65 16 4 N -0.71 -13.71 5.54 -472.11 -2.61 -16.33 16 5 C 0.53 14.91 7.91 87.66 0.69 15.60 16 6 O -0.56 -20.54 16.50 15.75 0.26 -20.28 16 7 C 0.04 1.34 5.96 71.23 0.42 1.76 16 8 O -0.35 -14.82 9.02 -50.76 -0.46 -15.28 16 9 C 0.51 24.74 7.85 70.20 0.55 25.29 16 10 O -0.53 -27.69 13.38 19.75 0.26 -27.43 16 11 C -0.28 -14.25 5.92 -19.71 -0.12 -14.37 16 12 C -0.03 -1.24 9.60 22.52 0.22 -1.03 16 13 C -0.25 -10.14 10.03 22.41 0.22 -9.92 16 14 C -0.06 -2.59 10.01 22.26 0.22 -2.37 16 15 C -0.22 -10.97 7.90 22.72 0.18 -10.79 16 16 C 0.10 5.45 5.16 -21.10 -0.11 5.34 16 17 C -0.50 -27.75 7.62 23.41 0.18 -27.57 16 18 H 0.09 5.00 5.99 -2.91 -0.02 4.98 16 19 C 0.00 0.04 5.01 85.38 0.43 0.47 16 20 N -0.80 -42.95 12.60 21.88 0.28 -42.68 16 21 Si 1.12 43.95 29.98 68.60 2.06 46.00 16 22 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 23 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 24 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 25 H 0.26 0.59 7.80 -4.43 -0.03 0.55 16 26 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.42 5.76 8.45 -92.71 -0.78 4.98 16 29 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.12 5.07 7.61 -2.91 -0.02 5.05 16 32 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 34 H 0.10 5.06 6.99 -2.91 -0.02 5.04 16 35 H 0.29 15.81 6.62 -92.71 -0.61 15.20 16 Total: -1.00 -70.99 322.30 5.55 -65.44 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.50 Total: 26.89 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 5.26 Total: -16.35 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -2.34 Total: -59.00 kcal Atomic # 8 Polarization: -63.05 SS G_CDS: 0.07 Total: -62.99 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.06 Total: 46.00 kcal Total: -70.99 5.55 -65.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027370864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.245 kcal (2) G-P(sol) polarization free energy of solvation -70.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds