Wall clock time and date at job start Tue Mar 31 2020 02:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48503 * 109.47272 * 270.00159 * 3 2 1 5 5 H 1.48494 * 109.47103 * 30.00032 * 3 2 1 6 6 H 1.48502 * 109.46968 * 150.00438 * 3 2 1 7 7 C 1.38795 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00623 * 359.97438 * 7 2 1 9 9 S 1.76207 * 119.99788 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99729 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46840 * 179.97438 * 10 9 7 12 12 O 1.20829 * 120.00166 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99932 * 179.97438 * 11 10 9 14 14 C 1.45200 * 117.00044 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47329 * 180.02562 * 14 13 11 16 16 O 1.21284 * 120.00109 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00137 * 179.97438 * 15 14 13 18 18 C 1.46506 * 119.99873 * 179.97438 * 17 15 14 19 19 C 1.54268 * 110.03351 * 272.90833 * 18 17 15 20 20 C 1.54960 * 104.16081 * 217.13577 * 19 18 17 21 21 C 1.54894 * 102.77798 * 37.89146 * 20 19 18 22 22 C 1.53876 * 110.02735 * 155.69309 * 18 17 15 23 23 H 0.97003 * 119.99906 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47276 * 60.00486 * 10 9 7 25 25 H 1.08998 * 109.47530 * 299.99950 * 10 9 7 26 26 H 1.09004 * 109.47066 * 60.00176 * 14 13 11 27 27 H 1.09000 * 109.47147 * 300.00138 * 14 13 11 28 28 H 0.96995 * 120.00018 * 0.27749 * 17 15 14 29 29 H 1.08996 * 110.01518 * 34.30257 * 18 17 15 30 30 H 1.09004 * 110.48628 * 335.78894 * 19 18 17 31 31 H 1.09007 * 110.48293 * 98.42755 * 19 18 17 32 32 H 1.08999 * 110.72063 * 279.58023 * 20 19 18 33 33 H 1.09000 * 110.91947 * 156.29644 * 20 19 18 34 34 H 1.09000 * 110.48739 * 203.40857 * 21 20 19 35 35 H 1.09000 * 110.59948 * 80.80998 * 21 20 19 36 36 H 1.08997 * 110.03107 * 238.56635 * 22 18 17 37 37 H 1.08992 * 110.03504 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5729 -3.2326 -0.0021 12 8 6.3411 -2.2999 -0.0025 13 8 6.0436 -4.4897 -0.0016 14 6 7.4864 -4.6534 -0.0022 15 6 7.8254 -6.1217 -0.0021 16 8 6.9384 -6.9489 -0.0012 17 7 9.1142 -6.5158 -0.0032 18 6 9.4437 -7.9433 -0.0025 19 6 9.4924 -8.4738 1.4452 20 6 10.6600 -9.4925 1.4367 21 6 11.6982 -8.8159 0.5074 22 6 10.8454 -8.1609 -0.5989 23 1 -0.4850 0.8401 0.0004 24 1 3.6432 -3.4318 -0.8907 25 1 3.6439 -3.4314 0.8893 26 1 7.9058 -4.1833 0.8874 27 1 7.9049 -4.1843 -0.8926 28 1 9.8236 -5.8543 0.0001 29 1 8.7027 -8.4975 -0.5786 30 1 9.6997 -7.6619 2.1423 31 1 8.5555 -8.9684 1.7020 32 1 10.3358 -10.4474 1.0229 33 1 11.0676 -9.6258 2.4388 34 1 12.3704 -9.5602 0.0805 35 1 12.2639 -8.0593 1.0511 36 1 10.7848 -8.8214 -1.4638 37 1 11.2807 -7.2045 -0.8883 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046256958.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:33 Heat of formation + Delta-G solvation = -156.511480 kcal Electronic energy + Delta-G solvation = -19567.093196 eV Core-core repulsion = 16241.384202 eV Total energy + Delta-G solvation = -3325.708994 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.80397 -40.84785 -38.74133 -37.50186 -34.83070 -34.69329 -31.91702 -30.11909 -29.65759 -27.95078 -27.66897 -22.88217 -22.01295 -21.49148 -21.35262 -20.00907 -18.85815 -18.46162 -17.99889 -17.53611 -17.14609 -16.71003 -16.33908 -16.17002 -15.95014 -15.36224 -14.93283 -14.85240 -14.52412 -14.27355 -13.80256 -13.64539 -13.34792 -13.09662 -13.01753 -12.80066 -12.53523 -12.02716 -11.97315 -11.96093 -11.92326 -11.79364 -11.73726 -11.48367 -11.18199 -11.05411 -10.65227 -10.18706 -9.06892 -8.52357 -6.26587 0.66087 0.99643 1.25408 1.32952 1.38290 1.48631 1.65144 2.22395 2.27082 2.65097 2.85511 3.47525 3.63825 3.68126 3.73120 3.98482 4.00573 4.03767 4.09870 4.39844 4.44058 4.50855 4.53479 4.61058 4.76707 4.88475 5.03298 5.05571 5.11064 5.22716 5.27326 5.45251 5.52272 5.69524 6.11646 6.34995 6.55427 6.90830 7.07615 8.60101 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.058020 B = 0.002473 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.475602 B =11318.640712 C =11588.239291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.044 3.956 3 Si 0.917 3.083 4 H -0.260 1.260 5 H -0.259 1.259 6 H -0.231 1.231 7 C -0.535 4.535 8 H 0.062 0.938 9 S -0.151 6.151 10 C -0.093 4.093 11 C 0.495 3.505 12 O -0.507 6.507 13 O -0.341 6.341 14 C 0.041 3.959 15 C 0.518 3.482 16 O -0.565 6.565 17 N -0.703 5.703 18 C 0.136 3.864 19 C -0.138 4.138 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.125 4.125 23 H 0.278 0.722 24 H 0.123 0.877 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.420 0.580 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.251 -16.032 0.681 31.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.161 4.161 3 Si 0.739 3.261 4 H -0.185 1.185 5 H -0.183 1.183 6 H -0.155 1.155 7 C -0.683 4.683 8 H 0.081 0.919 9 S 0.075 5.925 10 C -0.241 4.241 11 C 0.337 3.663 12 O -0.395 6.395 13 O -0.258 6.258 14 C -0.036 4.036 15 C 0.304 3.696 16 O -0.443 6.443 17 N -0.358 5.358 18 C 0.032 3.968 19 C -0.177 4.177 20 C -0.160 4.160 21 C -0.157 4.157 22 C -0.163 4.163 23 H 0.088 0.912 24 H 0.141 0.859 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.258 0.742 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 27.437 -15.405 0.667 31.473 hybrid contribution -1.141 -0.122 -0.004 1.148 sum 26.296 -15.527 0.663 30.545 Atomic orbital electron populations 1.70024 1.07442 1.29197 1.48618 1.25622 0.95342 1.02488 0.92681 0.85831 0.80747 0.79178 0.80383 1.18454 1.18333 1.15506 1.22429 0.89973 0.96908 1.58954 0.91940 1.84489 1.06889 1.03383 1.97689 1.22943 0.91420 1.00876 1.08888 1.22804 0.91164 0.80444 0.71855 1.90661 1.58947 1.44290 1.45631 1.86547 1.25550 1.29527 1.84129 1.22993 0.78661 0.94557 1.07389 1.20259 0.83656 0.89789 0.75912 1.90754 1.48376 1.55236 1.49975 1.45917 1.06151 1.09158 1.74528 1.21784 0.98081 0.79945 0.96979 1.22803 0.99163 0.99561 0.96133 1.22491 0.94926 0.97877 1.00720 1.22364 0.97236 1.00122 0.96018 1.22427 0.92151 1.02709 0.99011 0.91237 0.85868 0.85838 0.85846 0.85771 0.74208 0.91233 0.90950 0.93077 0.91236 0.90543 0.90200 0.90551 0.90115 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.42 13.97 21.65 0.30 -55.12 16 2 C 0.04 2.57 5.50 84.86 0.47 3.04 16 3 Si 0.92 43.62 27.74 68.60 1.90 45.52 16 4 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.23 -10.76 6.74 99.48 0.67 -10.09 16 7 C -0.54 -30.87 10.04 67.95 0.68 -30.18 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 9 S -0.15 -7.37 18.55 -56.49 -1.05 -8.42 16 10 C -0.09 -3.62 6.27 71.24 0.45 -3.18 16 11 C 0.50 17.31 7.98 71.24 0.57 17.88 16 12 O -0.51 -19.23 15.61 21.95 0.34 -18.89 16 13 O -0.34 -10.56 9.76 -45.08 -0.44 -11.00 16 14 C 0.04 0.87 5.94 71.23 0.42 1.30 16 15 C 0.52 11.59 7.90 87.66 0.69 12.29 16 16 O -0.57 -18.47 16.17 15.76 0.25 -18.22 16 17 N -0.70 -9.62 5.04 -439.09 -2.21 -11.83 16 18 C 0.14 1.89 3.23 45.72 0.15 2.04 16 19 C -0.14 -1.92 6.54 31.69 0.21 -1.71 16 20 C -0.12 -1.12 6.91 31.91 0.22 -0.90 16 21 C -0.12 -0.74 6.83 31.67 0.22 -0.53 16 22 C -0.13 -0.93 6.57 31.32 0.21 -0.73 16 23 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 24 H 0.12 4.54 8.14 -2.39 -0.02 4.52 16 25 H 0.12 4.56 8.14 -2.40 -0.02 4.54 16 26 H 0.12 2.11 8.13 -2.38 -0.02 2.09 16 27 H 0.12 2.10 8.13 -2.39 -0.02 2.08 16 28 H 0.42 2.72 8.31 -92.71 -0.77 1.95 16 29 H 0.07 1.33 7.59 -2.39 -0.02 1.31 16 30 H 0.07 0.98 8.05 -2.39 -0.02 0.96 16 31 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 0.41 7.61 -2.39 -0.02 0.39 16 Total: -1.00 -74.79 330.80 3.65 -71.14 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.27 Total: 7.51 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 4.28 Total: -0.69 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -1.91 Total: -66.95 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: 0.16 Total: -48.11 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.90 Total: 45.52 kcal Atomic # 16 Polarization: -7.37 SS G_CDS: -1.05 Total: -8.42 kcal Total: -74.79 3.65 -71.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046256958.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.372 kcal (2) G-P(sol) polarization free energy of solvation -74.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds