Wall clock time and date at job start Tue Mar 31 2020 02:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 S 1.65606 * 120.00213 * 94.99840 * 12 2 1 14 14 O 1.42098 * 104.27410 * 181.07152 * 13 12 2 15 15 O 1.42100 * 104.27459 * 308.92865 * 13 12 2 16 16 C 1.81394 * 104.44702 * 65.00061 * 13 12 2 17 17 C 1.50700 * 109.47194 * 180.02562 * 16 13 12 18 18 C 1.38249 * 119.97427 * 269.72704 * 17 16 13 19 19 C 1.38192 * 120.02562 * 179.72406 * 18 17 16 20 20 C 1.38456 * 119.97244 * 0.57070 * 19 18 17 21 21 F 1.35105 * 120.02445 * 179.68190 * 20 19 18 22 22 C 1.38458 * 119.95208 * 359.70041 * 20 19 18 23 23 C 1.38195 * 119.97008 * 0.02562 * 22 20 19 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 119.99959 * 275.00431 * 12 2 1 29 29 H 1.09007 * 109.47432 * 299.99980 * 16 13 12 30 30 H 1.09004 * 109.47490 * 59.99713 * 16 13 12 31 31 H 1.08001 * 119.98091 * 359.97438 * 18 17 16 32 32 H 1.07998 * 120.01204 * 180.25217 * 19 18 17 33 33 H 1.07997 * 120.01536 * 179.97438 * 22 20 19 34 34 H 1.08007 * 119.98626 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1774 -2.5505 14 8 2.8122 -0.8073 -3.4937 15 8 1.2751 0.9968 -2.7845 16 6 3.8313 1.1874 -2.0440 17 6 4.2864 2.0327 -3.2056 18 6 5.2433 1.5492 -4.0786 19 6 5.6573 2.3211 -5.1474 20 6 5.1220 3.5839 -5.3371 21 9 5.5307 4.3420 -6.3780 22 6 4.1679 4.0693 -4.4590 23 6 3.7513 3.2933 -3.3941 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 2.1109 -1.6561 -1.1950 29 1 3.5399 1.8344 -1.2165 30 1 4.6459 0.5363 -1.7267 31 1 5.6643 0.5662 -3.9273 32 1 6.4018 1.9416 -5.8315 33 1 3.7500 5.0543 -4.6057 34 1 3.0073 3.6719 -2.7087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058268641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:05 Heat of formation + Delta-G solvation = -121.423936 kcal Electronic energy + Delta-G solvation = -20436.203291 eV Core-core repulsion = 16988.555502 eV Total energy + Delta-G solvation = -3447.647789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.078 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.97083 -40.22732 -38.14796 -37.24055 -36.90849 -34.08594 -33.78391 -32.21984 -30.09058 -28.10635 -27.20097 -24.15502 -22.87330 -22.80856 -20.29350 -19.16140 -18.73216 -18.00094 -17.58059 -17.53419 -17.06643 -16.66104 -16.39852 -16.34115 -15.37068 -15.11745 -14.71679 -14.53828 -14.47109 -14.04138 -13.70910 -13.53616 -13.41605 -13.20334 -13.08533 -13.01974 -12.90925 -12.77772 -12.36169 -12.20347 -12.06834 -12.03578 -11.92470 -11.08597 -10.55785 -10.19372 -10.11848 -9.59518 -8.11480 -6.26241 -0.78284 0.09117 0.15434 1.49364 1.50922 1.57581 1.92783 2.44256 2.47490 2.83118 3.15938 3.18266 3.26826 3.38801 3.66362 3.88925 4.01623 4.20518 4.39406 4.52059 4.53699 4.88359 4.89745 4.94459 5.03614 5.11236 5.14244 5.19089 5.32753 5.61862 5.76059 5.78053 6.04389 6.11411 6.44550 6.85668 7.44261 8.93290 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.026561 B = 0.004186 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.943355 B = 6687.315248 C = 6928.856604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.275 3.725 3 H 0.033 0.967 4 C -0.541 4.541 5 H 0.071 0.929 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.959 3.041 9 H -0.288 1.288 10 H -0.274 1.274 11 H -0.268 1.268 12 N -1.105 6.105 13 S 2.612 3.388 14 O -0.990 6.990 15 O -0.990 6.990 16 C -0.569 4.569 17 C -0.115 4.115 18 C -0.084 4.084 19 C -0.150 4.150 20 C 0.091 3.909 21 F -0.141 7.141 22 C -0.153 4.153 23 C -0.090 4.090 24 H 0.071 0.929 25 H 0.028 0.972 26 H 0.032 0.968 27 H 0.265 0.735 28 H 0.414 0.586 29 H 0.152 0.848 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.540 3.658 -10.465 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.169 3.831 3 H 0.051 0.949 4 C -0.580 4.580 5 H 0.089 0.911 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.785 3.215 9 H -0.214 1.214 10 H -0.199 1.199 11 H -0.193 1.193 12 N -0.864 5.864 13 S 2.708 3.292 14 O -0.981 6.981 15 O -0.980 6.980 16 C -0.699 4.699 17 C -0.117 4.117 18 C -0.103 4.103 19 C -0.169 4.169 20 C 0.071 3.929 21 F -0.119 7.119 22 C -0.171 4.171 23 C -0.109 4.109 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.249 0.751 29 H 0.170 0.830 30 H 0.187 0.813 31 H 0.178 0.822 32 H 0.183 0.817 33 H 0.178 0.822 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.972 3.930 -11.182 14.865 hybrid contribution 0.463 -0.340 1.334 1.452 sum 9.435 3.590 -9.848 14.103 Atomic orbital electron populations 1.22160 0.98989 0.99679 1.00527 1.18305 0.91056 0.91796 0.81922 0.94945 1.21611 1.32108 1.13571 0.90750 0.91086 1.25658 0.95002 0.95610 1.01794 1.69986 1.36886 1.23770 1.24592 0.85589 0.78887 0.78553 0.78445 1.21390 1.19924 1.19324 1.55468 1.81473 1.19005 1.30438 1.04739 0.76595 0.74721 0.73174 1.93505 1.84960 1.58483 1.61115 1.93532 1.48045 1.71698 1.84764 1.29490 1.20468 1.13849 1.06081 1.19288 1.00298 0.95767 0.96334 1.21361 0.95056 1.01008 0.92911 1.21433 1.02603 0.92874 0.99982 1.17976 0.97439 0.90754 0.86681 1.91500 1.89306 1.75421 1.55696 1.21388 0.98181 1.02580 0.94979 1.21330 0.98932 0.92971 0.97687 0.91067 0.95315 0.94884 0.92553 0.75141 0.83022 0.81293 0.82187 0.81671 0.82210 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.35 9.29 71.98 0.67 -6.68 16 2 C 0.27 12.52 2.66 44.24 0.12 12.64 16 3 H 0.03 1.52 7.15 -2.39 -0.02 1.50 16 4 C -0.54 -26.32 8.76 25.60 0.22 -26.10 16 5 H 0.07 3.29 7.81 -2.91 -0.02 3.26 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.91 -48.23 11.32 21.45 0.24 -47.99 16 8 Si 0.96 39.73 29.54 68.60 2.03 41.76 16 9 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 12 N -1.10 -41.81 5.35 -172.53 -0.92 -42.73 16 13 S 2.61 90.14 5.36 -56.49 -0.30 89.84 16 14 O -0.99 -36.53 18.08 -127.65 -2.31 -38.84 16 15 O -0.99 -40.84 17.11 -127.65 -2.18 -43.03 16 16 C -0.57 -15.06 6.09 71.24 0.43 -14.62 16 17 C -0.11 -2.90 5.14 -19.86 -0.10 -3.00 16 18 C -0.08 -1.84 9.70 22.26 0.22 -1.62 16 19 C -0.15 -2.99 10.03 22.31 0.22 -2.76 16 20 C 0.09 1.99 7.30 22.37 0.16 2.15 16 21 F -0.14 -3.08 17.27 44.97 0.78 -2.30 16 22 C -0.15 -3.30 10.03 22.31 0.22 -3.08 16 23 C -0.09 -2.19 9.70 22.26 0.22 -1.98 16 24 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 25 H 0.03 1.31 7.43 -2.38 -0.02 1.29 16 26 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 28 H 0.41 14.47 8.79 -96.74 -0.85 13.62 16 29 H 0.15 3.98 7.38 -2.39 -0.02 3.96 16 30 H 0.17 3.57 8.08 -2.39 -0.02 3.55 16 31 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -63.00 310.74 0.44 -62.56 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.28 Total: 24.34 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 2.83 Total: -43.61 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -0.68 Total: -90.72 kcal Atomic # 8 Polarization: -77.37 SS G_CDS: -4.49 Total: -81.87 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Atomic # 16 Polarization: 90.14 SS G_CDS: -0.30 Total: 89.84 kcal Total: -63.00 0.44 -62.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058268641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.868 kcal (2) G-P(sol) polarization free energy of solvation -62.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds