Wall clock time and date at job start Tue Mar 31 2020 03:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46856 * 2 1 4 4 C 1.50699 * 109.47009 * 119.99761 * 2 1 3 5 5 H 1.08005 * 119.99816 * 119.99644 * 4 2 1 6 6 C 1.37877 * 120.00363 * 300.00276 * 4 2 1 7 7 N 1.31519 * 119.99790 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47342 * 89.99890 * 8 6 4 10 10 H 1.48504 * 109.46915 * 209.99580 * 8 6 4 11 11 H 1.48500 * 109.47450 * 329.99416 * 8 6 4 12 12 N 1.46504 * 109.47032 * 239.99812 * 2 1 3 13 13 C 1.34781 * 119.99746 * 85.00319 * 12 2 1 14 14 O 1.21489 * 119.99841 * 359.97438 * 13 12 2 15 15 C 1.48208 * 119.99524 * 179.97438 * 13 12 2 16 16 C 1.35451 * 118.71040 * 179.97438 * 15 13 12 17 17 C 1.47081 * 118.77219 * 180.02562 * 16 15 13 18 18 O 1.21835 * 121.59590 * 179.97438 * 17 16 15 19 19 C 1.47537 * 116.80828 * 359.97438 * 17 16 15 20 20 C 1.39453 * 121.33933 * 179.97438 * 19 17 16 21 21 C 1.36735 * 119.67112 * 180.02562 * 20 19 17 22 22 C 1.38797 * 120.39379 * 359.97438 * 21 20 19 23 23 C 1.37806 * 120.75567 * 359.97438 * 22 21 20 24 24 C 1.39149 * 119.83806 * 0.04005 * 23 22 21 25 25 O 1.34100 * 118.72080 * 0.02562 * 15 13 12 26 26 H 1.08993 * 109.47129 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47188 * 300.00395 * 1 2 3 28 28 H 1.09006 * 109.47088 * 60.00038 * 1 2 3 29 29 H 0.96991 * 119.99630 * 180.02562 * 7 6 4 30 30 H 0.96992 * 120.00023 * 264.99818 * 12 2 1 31 31 H 1.07994 * 120.61526 * 0.03782 * 16 15 13 32 32 H 1.08001 * 120.16917 * 0.02562 * 20 19 17 33 33 H 1.07992 * 119.80226 * 179.72662 * 21 20 19 34 34 H 1.08001 * 119.61862 * 179.97438 * 22 21 20 35 35 H 1.07993 * 120.07997 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4880 -2.5653 3.7123 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3572 14 8 1.8578 1.1604 -2.4118 15 6 2.6416 -0.7169 -3.5671 16 6 2.7605 -0.0162 -4.7202 17 6 3.2506 -0.7083 -5.9219 18 8 3.3768 -0.1281 -6.9858 19 6 3.5820 -2.1386 -5.7773 20 6 4.0540 -2.8864 -6.8557 21 6 4.3502 -4.2101 -6.6835 22 6 4.1843 -4.8113 -5.4435 23 6 3.7201 -4.0881 -4.3662 24 6 3.4120 -2.7398 -4.5184 25 8 2.9530 -2.0182 -3.4778 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.7095 1.1618 3.4844 30 1 2.2490 -1.6317 -1.1526 31 1 2.5004 1.0314 -4.7565 32 1 4.1849 -2.4223 -7.8221 33 1 4.7116 -4.7922 -7.5182 34 1 4.4217 -5.8578 -5.3217 35 1 3.5947 -4.5670 -3.4064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058357111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:47 Heat of formation + Delta-G solvation = -57.343231 kcal Electronic energy + Delta-G solvation = -21659.448591 eV Core-core repulsion = 18202.595904 eV Total energy + Delta-G solvation = -3456.852687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.099 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90651 -39.36030 -38.67167 -38.05428 -35.16034 -32.69861 -32.59867 -31.30931 -30.91841 -29.13291 -25.56614 -25.28576 -24.43310 -22.60652 -21.68023 -20.05603 -19.42960 -18.67401 -18.15566 -16.57473 -16.49764 -15.89300 -15.60235 -15.48649 -15.11868 -14.48631 -14.38004 -14.34018 -14.13551 -14.10723 -13.34876 -12.97192 -12.66717 -12.54654 -12.41860 -11.87294 -11.48341 -11.20986 -11.07669 -10.91862 -10.44556 -10.33888 -10.07576 -9.79757 -9.61113 -9.46024 -9.19447 -8.68427 -8.57398 -8.19725 -6.22203 -4.32404 0.22652 0.55987 1.16588 2.03361 2.56080 3.19710 3.25095 3.26854 3.28152 3.46114 3.64063 3.89343 4.18357 4.27120 4.50318 4.76840 4.86323 4.87420 5.09733 5.11195 5.13748 5.40025 5.55521 5.70123 5.83709 5.96119 6.06827 6.31638 6.67370 6.78422 6.96657 6.99797 7.15608 7.36719 7.39684 7.56585 7.74862 8.00030 8.33868 8.52773 8.77991 9.34900 10.83909 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.023035 B = 0.003972 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.242377 B = 7048.189793 C = 8026.116625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.260 3.740 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.680 5.680 13 C 0.555 3.445 14 O -0.515 6.515 15 C 0.115 3.885 16 C -0.253 4.253 17 C 0.423 3.577 18 O -0.461 6.461 19 C -0.229 4.229 20 C -0.030 4.030 21 C -0.155 4.155 22 C -0.055 4.055 23 C -0.142 4.142 24 C 0.160 3.840 25 O -0.219 6.219 26 H 0.030 0.970 27 H 0.094 0.906 28 H 0.017 0.983 29 H 0.266 0.734 30 H 0.398 0.602 31 H 0.174 0.826 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.378 -11.977 -13.922 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.159 3.841 3 H 0.073 0.927 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.327 5.327 13 C 0.336 3.664 14 O -0.393 6.393 15 C 0.064 3.936 16 C -0.275 4.275 17 C 0.306 3.694 18 O -0.341 6.341 19 C -0.231 4.231 20 C -0.048 4.048 21 C -0.173 4.173 22 C -0.073 4.073 23 C -0.160 4.160 24 C 0.114 3.886 25 O -0.125 6.125 26 H 0.049 0.951 27 H 0.113 0.887 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.232 0.768 31 H 0.192 0.808 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.095 -10.811 -14.076 18.465 hybrid contribution 0.415 -0.834 0.770 1.209 sum 5.509 -11.645 -13.305 18.520 Atomic orbital electron populations 1.22104 0.97814 0.99543 1.01297 1.18982 0.91475 0.94191 0.79409 0.92744 1.21161 1.32898 1.13515 0.90032 0.91806 1.24880 0.94643 0.94929 0.99114 1.69890 1.35551 1.22317 1.24147 0.86398 0.78647 0.79830 0.81952 1.20469 1.20994 1.19761 1.46648 1.62098 1.14154 1.09811 1.17603 0.80249 0.86444 0.82068 1.90838 1.51187 1.14104 1.83219 1.22692 0.93977 0.79957 0.96933 1.24102 1.07606 1.03732 0.92026 1.19896 0.75121 0.86408 0.87952 1.90683 1.44971 1.69129 1.29301 1.20771 1.10451 0.97276 0.94573 1.20854 0.92539 0.93501 0.97909 1.20969 1.03243 0.95041 0.98091 1.21220 0.94378 1.00075 0.91654 1.20603 1.03934 0.90078 1.01404 1.19397 0.93588 0.91158 0.84463 1.82904 1.70615 1.21369 1.37564 0.95111 0.88713 0.96415 0.92387 0.76762 0.80844 0.84201 0.84806 0.84236 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.19 16 2 C 0.26 6.31 2.56 -69.08 -0.18 6.13 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.54 -13.64 8.73 -34.44 -0.30 -13.94 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -23.94 11.32 55.43 0.63 -23.32 16 8 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 N -0.68 -13.62 5.06 -55.76 -0.28 -13.91 16 13 C 0.56 10.81 7.76 -12.16 -0.09 10.71 16 14 O -0.52 -11.63 15.84 5.38 0.09 -11.55 16 15 C 0.11 1.84 6.89 -36.48 -0.25 1.59 16 16 C -0.25 -3.99 9.76 -36.99 -0.36 -4.35 16 17 C 0.42 6.47 7.18 -32.21 -0.23 6.23 16 18 O -0.46 -7.89 17.42 5.07 0.09 -7.80 16 19 C -0.23 -2.97 5.89 -104.79 -0.62 -3.59 16 20 C -0.03 -0.31 9.62 -39.67 -0.38 -0.69 16 21 C -0.16 -1.20 9.98 -39.92 -0.40 -1.60 16 22 C -0.06 -0.40 10.01 -39.53 -0.40 -0.80 16 23 C -0.14 -1.32 10.01 -39.40 -0.39 -1.71 16 24 C 0.16 1.98 6.78 -38.38 -0.26 1.72 16 25 O -0.22 -3.08 8.88 5.18 0.05 -3.04 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.40 6.98 7.89 -40.82 -0.32 6.66 16 31 H 0.17 2.77 7.50 -52.49 -0.39 2.38 16 32 H 0.14 1.34 7.81 -52.49 -0.41 0.93 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 312.46 15.07 4.71 4.71 Total: -1.00 -29.85 312.46 -6.85 -36.70 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -3.49 Total: 5.11 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -3.61 Total: -1.81 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.35 Total: -37.22 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.22 Total: -22.38 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.85 -6.85 -36.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058357111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.642 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds