Wall clock time and date at job start Tue Mar 31 2020 03:07:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34230 * 116.99836 * 2 1
4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1
5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1
6 6 H 1.08996 * 110.43214 * 302.26375 * 5 3 2
7 7 C 1.54893 * 110.48709 * 64.94174 * 5 3 2
8 8 C 1.54885 * 102.74650 * 156.62312 * 7 5 3
9 9 C 1.54259 * 104.19939 * 322.05878 * 8 7 5
10 10 C 1.53878 * 106.60005 * 23.61246 * 9 8 7
11 11 H 1.08998 * 110.03108 * 240.72049 * 10 9 8
12 12 N 1.46490 * 110.03544 * 119.27987 * 10 9 8
13 13 C 1.34784 * 119.99670 * 87.83507 * 12 10 9
14 14 O 1.21282 * 120.00116 * 359.97438 * 13 12 10
15 15 C 1.50705 * 119.99981 * 179.97438 * 13 12 10
16 16 S 1.80991 * 109.47174 * 180.02562 * 15 13 12
17 17 C 1.76204 * 100.00132 * 180.02562 * 16 15 13
18 18 H 1.07997 * 119.99865 * 359.97438 * 17 16 15
19 19 C 1.38801 * 119.99903 * 180.02562 * 17 16 15
20 20 N 1.31627 * 120.00101 * 359.97438 * 19 17 16
21 21 Si 1.86792 * 119.99700 * 180.02562 * 19 17 16
22 22 H 1.48504 * 109.47489 * 89.99859 * 21 19 17
23 23 H 1.48497 * 109.47103 * 209.99651 * 21 19 17
24 24 H 1.48504 * 109.47342 * 329.99588 * 21 19 17
25 25 H 1.09001 * 109.46882 * 180.02562 * 1 2 3
26 26 H 1.08998 * 109.47630 * 300.00638 * 1 2 3
27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3
28 28 H 1.08997 * 110.75798 * 274.94321 * 7 5 3
29 29 H 1.09004 * 110.75502 * 38.31193 * 7 5 3
30 30 H 1.09003 * 110.48748 * 203.37842 * 8 7 5
31 31 H 1.09001 * 110.59973 * 80.80008 * 8 7 5
32 32 H 1.08995 * 110.03679 * 264.32293 * 9 8 7
33 33 H 1.09000 * 110.07661 * 142.91438 * 9 8 7
34 34 H 0.96998 * 120.00474 * 267.84142 * 12 10 9
35 35 H 1.09005 * 109.47096 * 300.00389 * 15 13 12
36 36 H 1.09000 * 109.47051 * 59.99793 * 15 13 12
37 37 H 0.96995 * 120.00214 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4032 2.2094 -0.0005
5 6 3.5663 1.2750 -0.0062
6 1 3.9785 0.7486 0.8546
7 6 4.1342 0.6926 -1.3243
8 6 5.5183 1.3793 -1.4329
9 6 5.2709 2.8126 -0.9192
10 6 4.0298 2.7464 -0.0120
11 1 3.2413 3.3846 -0.4109
12 7 4.3783 3.1680 1.3469
13 6 4.3201 4.4718 1.6837
14 8 3.9795 5.2959 0.8616
15 6 4.6781 4.9056 3.0819
16 16 4.5015 6.7015 3.2202
17 6 4.9694 6.9263 4.9040
18 1 5.2489 6.0737 5.5052
19 6 4.9778 8.1989 5.4581
20 7 4.6367 9.2379 4.7255
21 14 5.4746 8.4371 7.2429
22 1 6.9403 8.6625 7.3230
23 1 4.7617 9.6135 7.8023
24 1 5.1169 7.2248 8.0224
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3634 0.5139 0.8899
27 1 -0.3633 0.5137 -0.8901
28 1 4.2443 -0.3895 -1.2527
29 1 3.5017 0.9624 -2.1701
30 1 5.8545 1.3983 -2.4697
31 1 6.2495 0.8699 -0.8052
32 1 5.0848 3.4831 -1.7582
33 1 6.1323 3.1594 -0.3485
34 1 4.6511 2.5090 2.0043
35 1 4.0122 4.4193 3.7949
36 1 5.7088 4.6238 3.2970
37 1 4.6429 10.1272 5.1126
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000152436555.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:58
Heat of formation + Delta-G solvation = -160.164065 kcal
Electronic energy + Delta-G solvation = -20365.092578 eV
Core-core repulsion = 17039.225196 eV
Total energy + Delta-G solvation = -3325.867382 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 287.102 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.95411 -40.69241 -38.72648 -37.45845 -34.79485 -34.58620 -31.17508 -31.04539
-28.34946 -28.18642 -27.57614 -23.69594 -22.39025 -21.31451 -21.00127 -19.84408
-18.89923 -18.14111 -17.67886 -17.47605 -17.21404 -16.88728 -16.41286 -16.05068
-15.47413 -15.19508 -14.71291 -14.58720 -14.43992 -14.15795 -13.82126 -13.39717
-13.17700 -13.15208 -13.01059 -12.88670 -12.60626 -12.53887 -12.09510 -11.95459
-11.84100 -11.72818 -11.61384 -11.36926 -11.14789 -10.96668 -10.28595 -10.15374
-8.68342 -8.35136 -6.13955 1.07713 1.25143 1.42469 1.45324 1.55623
1.59712 1.64611 2.25102 2.28262 2.98908 3.18620 3.31724 3.50359
3.77536 3.95644 4.06163 4.24729 4.27470 4.28680 4.30221 4.32673
4.41250 4.47858 4.51240 4.65181 4.69054 4.97678 5.04976 5.17558
5.20388 5.31647 5.36999 5.40887 5.51655 6.19137 6.47487 6.64414
7.05715 7.24124 8.74288
Molecular weight = 287.10amu
Principal moments of inertia in cm(-1)
A = 0.025219 B = 0.003385 C = 0.003175
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1109.994207 B = 8270.425449 C = 8815.805681
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.352 6.352
3 C 0.464 3.536
4 O -0.542 6.542
5 C -0.087 4.087
6 H 0.151 0.849
7 C -0.100 4.100
8 C -0.109 4.109
9 C -0.135 4.135
10 C 0.146 3.854
11 H 0.067 0.933
12 N -0.707 5.707
13 C 0.534 3.466
14 O -0.564 6.564
15 C -0.128 4.128
16 S -0.155 6.155
17 C -0.547 4.547
18 H 0.084 0.916
19 C 0.012 3.988
20 N -0.912 5.912
21 Si 1.001 2.999
22 H -0.266 1.266
23 H -0.278 1.278
24 H -0.258 1.258
25 H 0.138 0.862
26 H 0.054 0.946
27 H 0.059 0.941
28 H 0.116 0.884
29 H 0.069 0.931
30 H 0.087 0.913
31 H 0.094 0.906
32 H 0.060 0.940
33 H 0.070 0.930
34 H 0.417 0.583
35 H 0.107 0.893
36 H 0.115 0.885
37 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.152 -26.340 -9.713 28.074
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.268 6.268
3 C 0.308 3.692
4 O -0.432 6.432
5 C -0.106 4.106
6 H 0.169 0.831
7 C -0.137 4.137
8 C -0.147 4.147
9 C -0.174 4.174
10 C 0.041 3.959
11 H 0.085 0.915
12 N -0.362 5.362
13 C 0.320 3.680
14 O -0.442 6.442
15 C -0.279 4.279
16 S 0.072 5.928
17 C -0.694 4.694
18 H 0.102 0.898
19 C -0.193 4.193
20 N -0.549 5.549
21 Si 0.823 3.177
22 H -0.191 1.191
23 H -0.204 1.204
24 H -0.181 1.181
25 H 0.156 0.844
26 H 0.073 0.927
27 H 0.077 0.923
28 H 0.135 0.865
29 H 0.088 0.912
30 H 0.106 0.894
31 H 0.113 0.887
32 H 0.078 0.922
33 H 0.088 0.912
34 H 0.255 0.745
35 H 0.125 0.875
36 H 0.133 0.867
37 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -0.991 -24.528 -11.097 26.939
hybrid contribution 0.069 -0.083 2.116 2.118
sum -0.922 -24.611 -8.981 26.215
Atomic orbital electron populations
1.23551 0.75091 1.05832 1.02172 1.86486 1.24623 1.32098 1.83603
1.24070 0.92780 0.81207 0.71156 1.90754 1.68034 1.37880 1.46493
1.22263 0.86069 0.96787 1.05479 0.83130 1.22499 0.96271 1.02313
0.92645 1.22352 0.96759 0.92561 1.03019 1.22572 0.96456 0.99662
0.98722 1.21583 0.97898 0.93818 0.82650 0.91512 1.45829 1.69544
1.07009 1.13797 1.20120 0.76169 0.82947 0.88805 1.90694 1.47596
1.53219 1.52683 1.23365 1.06320 1.01472 0.96729 1.85643 1.89491
1.00892 1.16744 1.23211 1.52836 0.96802 0.96581 0.89796 1.26166
0.94438 0.94378 1.04273 1.70191 1.46194 0.99678 1.38805 0.84918
0.78541 0.78310 0.75978 1.19125 1.20357 1.18142 0.84397 0.92739
0.92260 0.86550 0.91241 0.89435 0.88721 0.92159 0.91164 0.74525
0.87521 0.86663 0.91988
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 10.56 113.37 1.20 1.58 16
2 O -0.35 -6.27 10.57 -51.41 -0.54 -6.82 16
3 C 0.46 10.51 7.25 71.23 0.52 11.03 16
4 O -0.54 -17.79 15.17 21.94 0.33 -17.45 16
5 C -0.09 -1.41 3.06 -10.46 -0.03 -1.44 16
6 H 0.15 1.49 7.74 -2.39 -0.02 1.47 16
7 C -0.10 -1.05 6.32 31.89 0.20 -0.85 16
8 C -0.11 -1.19 6.83 31.67 0.22 -0.97 16
9 C -0.14 -2.77 6.59 31.32 0.21 -2.56 16
10 C 0.15 3.62 2.63 45.72 0.12 3.74 16
11 H 0.07 2.33 6.27 -2.39 -0.01 2.31 16
12 N -0.71 -18.94 4.98 -439.10 -2.19 -21.13 16
13 C 0.53 20.93 7.84 87.66 0.69 21.62 16
14 O -0.56 -28.06 15.52 -3.04 -0.05 -28.11 16
15 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16
16 S -0.15 -8.88 20.57 -56.49 -1.16 -10.04 16
17 C -0.55 -31.78 9.50 67.95 0.65 -31.13 16
18 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16
19 C 0.01 0.70 5.49 84.86 0.47 1.16 16
20 N -0.91 -57.07 13.22 21.65 0.29 -56.78 16
21 Si 1.00 44.10 29.55 68.60 2.03 46.13 16
22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16
23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16
24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16
25 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16
26 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16
27 H 0.06 0.90 8.13 -2.38 -0.02 0.88 16
28 H 0.12 0.60 8.14 -2.39 -0.02 0.59 16
29 H 0.07 0.86 8.05 -2.38 -0.02 0.84 16
30 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16
31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16
32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
33 H 0.07 1.54 7.92 -2.39 -0.02 1.53 16
34 H 0.42 7.58 8.36 -92.71 -0.77 6.81 16
35 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16
36 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16
37 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16
Total: -1.00 -85.67 330.84 3.68 -81.99
By element:
Atomic # 1 Polarization: 14.53 SS G_CDS: 0.31 Total: 14.84 kcal
Atomic # 6 Polarization: -7.29 SS G_CDS: 4.66 Total: -2.63 kcal
Atomic # 7 Polarization: -76.01 SS G_CDS: -1.90 Total: -77.91 kcal
Atomic # 8 Polarization: -52.12 SS G_CDS: -0.26 Total: -52.38 kcal
Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal
Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal
Total: -85.67 3.68 -81.99 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000152436555.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -78.172 kcal
(2) G-P(sol) polarization free energy of solvation -85.668 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.839 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.992 kcal
(6) G-S(sol) free energy of system = (1) + (5) -160.164 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds