Wall clock time and date at job start Tue Mar 31 2020 02:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47153 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54033 * 291.62070 * 11 10 9 13 13 O 1.42093 * 110.54359 * 68.37403 * 11 10 9 14 14 N 1.65606 * 104.44724 * 180.02562 * 11 10 9 15 15 C 1.34773 * 120.00253 * 64.99636 * 14 11 10 16 16 O 1.21286 * 120.00222 * 0.02562 * 15 14 11 17 17 C 1.50703 * 120.00239 * 180.02562 * 15 14 11 18 18 H 1.08999 * 115.54571 * 34.41806 * 17 15 14 19 19 C 1.52997 * 117.49979 * 248.75169 * 17 15 14 20 20 C 1.52996 * 117.49924 * 180.09020 * 17 15 14 21 21 H 1.08997 * 117.50010 * 359.97438 * 20 17 15 22 22 C 1.53002 * 117.49469 * 215.00231 * 20 17 15 23 23 C 1.52995 * 117.49725 * 128.62226 * 22 20 17 24 24 C 1.52991 * 60.00225 * 252.50688 * 23 22 20 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 0.97001 * 119.99859 * 245.00017 * 14 11 10 31 31 H 1.09003 * 117.49863 * 0.02562 * 19 17 15 32 32 H 1.08999 * 117.50143 * 145.01447 * 19 17 15 33 33 H 1.09004 * 115.54675 * 274.32822 * 22 20 17 34 34 H 1.09004 * 117.50247 * 0.02562 * 23 22 20 35 35 H 1.09003 * 117.49832 * 145.01554 * 23 22 20 36 36 H 1.08999 * 117.50180 * 252.51127 * 24 23 22 37 37 H 1.09007 * 117.52009 * 107.47608 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6639 -5.4201 1.2355 13 8 0.6646 -5.4193 -1.2385 14 7 2.5204 -6.3928 -0.0005 15 6 3.3462 -6.5126 1.0578 16 8 3.2232 -5.7714 2.0100 17 6 4.4224 -7.5676 1.0583 18 1 4.8714 -7.7814 0.0884 19 6 4.2692 -8.7326 2.0381 20 6 5.3261 -7.6543 2.2898 21 1 5.1426 -6.9480 3.0995 22 6 6.7910 -8.0346 2.0655 23 6 7.8584 -7.1300 2.6846 24 6 7.6299 -7.1188 1.1719 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 2.6185 -6.9858 -0.7618 31 1 3.3898 -8.7363 2.6822 32 1 4.6178 -9.7128 1.7130 33 1 6.9983 -9.1040 2.0259 34 1 7.5170 -6.2642 3.2521 35 1 8.7682 -7.6042 3.0527 36 1 8.3893 -7.5856 0.5447 37 1 7.1379 -6.2455 0.7433 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181263075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:15 Heat of formation + Delta-G solvation = -98.356058 kcal Electronic energy + Delta-G solvation = -20553.334458 eV Core-core repulsion = 17230.147273 eV Total energy + Delta-G solvation = -3323.187186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.53965 -39.01203 -38.30331 -37.27316 -35.99870 -35.87952 -35.61333 -33.20949 -27.70091 -26.67327 -24.42051 -23.67668 -23.21648 -22.22637 -20.95869 -20.52757 -19.33909 -18.93304 -18.37202 -17.38236 -16.82596 -16.62724 -16.53299 -16.32065 -16.07542 -15.36482 -15.23035 -14.51619 -14.11715 -13.90916 -13.79162 -13.51600 -13.41672 -13.30051 -12.97657 -12.86589 -12.52582 -12.37532 -12.26431 -12.25508 -12.06074 -11.87416 -11.85582 -11.77520 -11.42091 -11.10397 -10.91219 -10.67764 -10.57389 -8.29382 -6.43752 -1.04617 0.88468 1.36424 1.38918 1.41383 1.52453 2.34994 2.48806 2.62590 2.90050 3.04017 3.08450 3.24620 3.63492 3.70824 3.84832 3.98306 3.99778 4.07665 4.18582 4.24846 4.36607 4.55967 4.64967 4.82529 4.87009 4.96531 5.09621 5.18673 5.20302 5.22034 5.33057 5.39415 5.63772 5.67152 6.01127 6.40641 6.68570 7.26285 8.83164 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.004302 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.199267 B = 6506.401184 C = 7738.974747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.257 1.257 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.022 3.978 10 C -0.578 4.578 11 S 2.599 3.401 12 O -0.980 6.980 13 O -0.970 6.970 14 N -1.032 6.032 15 C 0.557 3.443 16 O -0.535 6.535 17 C -0.191 4.191 18 H 0.170 0.830 19 C -0.124 4.124 20 C -0.099 4.099 21 H 0.095 0.905 22 C -0.120 4.120 23 C -0.185 4.185 24 C -0.177 4.177 25 H 0.269 0.731 26 H 0.004 0.996 27 H 0.016 0.984 28 H 0.152 0.848 29 H 0.132 0.868 30 H 0.451 0.549 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.560 -20.270 -0.131 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.181 1.181 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.091 0.909 9 C -0.017 4.017 10 C -0.711 4.711 11 S 2.698 3.302 12 O -0.970 6.970 13 O -0.960 6.960 14 N -0.799 5.799 15 C 0.346 3.654 16 O -0.409 6.409 17 C -0.213 4.213 18 H 0.188 0.812 19 C -0.161 4.161 20 C -0.118 4.118 21 H 0.114 0.886 22 C -0.138 4.138 23 C -0.222 4.222 24 C -0.214 4.214 25 H 0.078 0.922 26 H 0.022 0.978 27 H 0.035 0.965 28 H 0.170 0.830 29 H 0.150 0.850 30 H 0.292 0.708 31 H 0.110 0.890 32 H 0.163 0.837 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.373 -19.858 0.551 25.120 hybrid contribution 0.215 1.298 -0.262 1.341 sum 15.588 -18.561 0.289 24.240 Atomic orbital electron populations 1.70096 1.08035 1.28464 1.50587 1.26122 0.95911 1.03875 0.94165 0.85282 0.78690 0.77494 0.78605 1.19807 1.18074 1.20400 1.21464 0.93897 0.90724 1.52001 0.90857 1.18837 0.93448 0.92731 0.96661 1.30235 1.12867 1.15695 1.12330 1.05377 0.74802 0.76886 0.73125 1.93543 1.71952 1.84927 1.46548 1.93562 1.71480 1.85504 1.45441 1.54788 1.47891 1.49194 1.28000 1.20554 0.81010 0.84127 0.79663 1.90897 1.70730 1.44878 1.34416 1.22527 0.99112 0.99239 1.00452 0.81216 1.23299 1.00269 0.94185 0.98385 1.21914 0.91187 1.02023 0.96681 0.88640 1.21801 0.88212 0.98215 1.05581 1.23061 1.00710 1.02065 0.96324 1.23050 1.03005 1.01939 0.93414 0.92242 0.97750 0.96524 0.83038 0.84987 0.70808 0.88977 0.83650 0.84913 0.90049 0.87229 0.86963 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.98 44.13 29.54 68.60 2.03 46.16 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 8 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.02 1.21 4.98 29.85 0.15 1.36 16 10 C -0.58 -23.59 5.82 71.98 0.42 -23.17 16 11 S 2.60 96.40 5.11 -56.49 -0.29 96.11 16 12 O -0.98 -44.82 17.04 -120.71 -2.06 -46.87 16 13 O -0.97 -38.53 18.08 -127.65 -2.31 -40.84 16 14 N -1.03 -25.13 5.60 -173.53 -0.97 -26.10 16 15 C 0.56 14.49 7.35 87.66 0.64 15.14 16 16 O -0.53 -19.17 14.36 13.36 0.19 -18.98 16 17 C -0.19 -3.00 5.83 -11.54 -0.07 -3.07 16 18 H 0.17 1.43 8.14 -2.39 -0.02 1.42 16 19 C -0.12 -1.59 9.96 30.62 0.30 -1.28 16 20 C -0.10 -1.62 5.38 -10.77 -0.06 -1.68 16 21 H 0.10 2.13 7.67 -2.39 -0.02 2.11 16 22 C -0.12 -1.41 5.87 -10.80 -0.06 -1.48 16 23 C -0.18 -2.46 10.25 30.59 0.31 -2.15 16 24 C -0.18 -2.17 10.18 30.59 0.31 -1.86 16 25 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 26 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.15 5.12 8.14 -2.39 -0.02 5.10 16 29 H 0.13 5.36 7.19 -2.39 -0.02 5.34 16 30 H 0.45 6.56 8.79 -96.74 -0.85 5.71 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -81.95 333.79 -0.25 -82.19 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.23 Total: 14.23 kcal Atomic # 6 Polarization: -51.30 SS G_CDS: 2.65 Total: -48.65 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -0.69 Total: -83.35 kcal Atomic # 8 Polarization: -102.52 SS G_CDS: -4.17 Total: -106.69 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 96.40 SS G_CDS: -0.29 Total: 96.11 kcal Total: -81.95 -0.25 -82.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181263075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.162 kcal (2) G-P(sol) polarization free energy of solvation -81.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds