Wall clock time and date at job start Tue Mar 31 2020 03:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46646 * 182.78058 * 3 2 1 5 5 C 1.36873 * 119.99997 * 69.52158 * 4 3 2 6 6 H 1.08005 * 119.99912 * 190.80302 * 5 4 3 7 7 C 1.39047 * 120.00202 * 10.80723 * 5 4 3 8 8 N 1.31360 * 119.99570 * 318.99881 * 7 5 4 9 9 Si 1.86795 * 120.00081 * 138.99883 * 7 5 4 10 10 H 1.48502 * 109.47135 * 59.99994 * 9 7 5 11 11 H 1.48506 * 109.47169 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47616 * 299.99949 * 9 7 5 13 13 C 1.34779 * 119.99940 * 249.51826 * 4 3 2 14 14 O 1.21585 * 119.99921 * 185.66693 * 13 4 3 15 15 C 1.47745 * 119.99643 * 5.66756 * 13 4 3 16 16 C 1.39773 * 120.07923 * 31.77520 * 15 13 4 17 17 C 1.38047 * 120.14994 * 179.78624 * 16 15 13 18 18 C 1.38098 * 120.30782 * 0.46126 * 17 16 15 19 19 C 1.39734 * 120.15393 * 359.79035 * 18 17 16 20 20 C 1.47740 * 120.07935 * 179.97438 * 19 18 17 21 21 O 1.21463 * 120.00310 * 179.97438 * 20 19 18 22 22 O 1.34712 * 119.99920 * 359.97438 * 20 19 18 23 23 C 1.45192 * 117.00023 * 179.97438 * 22 20 19 24 24 C 1.39358 * 120.07479 * 212.04354 * 15 13 4 25 25 H 4.40641 * 5.51389 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47381 * 302.77874 * 3 2 1 27 27 H 1.08996 * 109.47185 * 62.78155 * 3 2 1 28 28 H 0.97005 * 119.99514 * 179.97438 * 8 7 5 29 29 H 1.07998 * 119.92929 * 359.97438 * 16 15 13 30 30 H 1.07997 * 119.84412 * 180.23192 * 17 16 15 31 31 H 1.08000 * 119.93031 * 179.76443 * 18 17 16 32 32 H 1.08997 * 109.47613 * 60.00000 * 23 22 20 33 33 H 1.09002 * 109.47538 * 179.97438 * 23 22 20 34 34 H 1.09007 * 109.47208 * 299.99688 * 23 22 20 35 35 H 1.08004 * 120.15514 * 359.95510 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3805 0.0670 5 6 2.9704 2.1091 1.2142 6 1 3.1675 3.1710 1.2121 7 6 2.5509 1.4822 2.3822 8 7 1.6103 0.5664 2.3346 9 14 3.3247 1.9422 4.0189 10 1 3.0983 3.3855 4.2852 11 1 2.7067 1.1365 5.1026 12 1 4.7839 1.6708 3.9703 13 6 3.7430 1.9325 -1.0009 14 8 4.2389 3.0391 -0.9132 15 6 3.8084 1.1927 -2.2782 16 6 2.7767 0.3203 -2.6360 17 6 2.8342 -0.3683 -3.8311 18 6 3.9143 -0.2079 -4.6766 19 6 4.9553 0.6570 -4.3292 20 6 6.1102 0.8270 -5.2346 21 8 7.0141 1.5795 -4.9315 22 8 6.1609 0.1472 -6.3966 23 6 7.3251 0.3637 -7.2367 24 6 4.9016 1.3591 -3.1264 25 1 -1.0503 -0.0005 0.0002 26 1 3.0096 -0.5555 0.8640 27 1 3.0096 -0.4692 -0.9138 28 1 1.3179 0.1287 3.1495 29 1 1.9312 0.1867 -1.9775 30 1 2.0325 -1.0384 -4.1044 31 1 3.9548 -0.7525 -5.6083 32 1 8.2248 0.0788 -6.6914 33 1 7.2402 -0.2425 -8.1386 34 1 7.3845 1.4170 -7.5109 35 1 5.7032 2.0292 -2.8532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225601942.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:15 Heat of formation + Delta-G solvation = 2.697420 kcal Electronic energy + Delta-G solvation = -21894.299928 eV Core-core repulsion = 18440.050799 eV Total energy + Delta-G solvation = -3454.249129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.099 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.54766 -39.51964 -37.58711 -36.38481 -35.40244 -32.56757 -31.47400 -31.14730 -30.76680 -27.88820 -26.58368 -25.27433 -23.91800 -22.76212 -20.97443 -19.70608 -18.13689 -17.62787 -17.12443 -16.54748 -16.37068 -16.27258 -15.66045 -14.85709 -14.72118 -14.24641 -13.91634 -13.88132 -13.51472 -13.47574 -12.91864 -12.76963 -12.41346 -12.23604 -12.15950 -11.87626 -11.30693 -11.12951 -10.94190 -10.88202 -10.63211 -10.45261 -10.34758 -9.42708 -9.31218 -8.93370 -8.79123 -8.73294 -8.43800 -8.18325 -6.60184 -3.83651 0.78325 1.36196 2.55555 2.63305 3.10413 3.20638 3.26391 3.55975 3.76347 3.94252 4.11030 4.20274 4.65332 4.71880 4.88066 4.96928 5.05061 5.06169 5.17749 5.33411 5.42597 5.47348 5.55751 5.60201 5.89540 6.06532 6.14134 6.23852 6.40423 6.50762 6.55586 6.65822 6.92635 6.97073 7.35205 7.75131 7.91593 8.27363 8.82878 8.98470 9.18335 9.79030 10.30884 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.004349 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.800005 B = 6436.561110 C = 7258.227992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.109 4.109 3 C 0.208 3.792 4 N -0.418 5.418 5 C -0.334 4.334 6 H 0.113 0.887 7 C 0.055 3.945 8 N -0.810 5.810 9 Si 0.900 3.100 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.465 3.535 14 O -0.580 6.580 15 C -0.105 4.105 16 C -0.078 4.078 17 C -0.139 4.139 18 C -0.064 4.064 19 C -0.139 4.139 20 C 0.511 3.489 21 O -0.504 6.504 22 O -0.357 6.357 23 C 0.037 3.963 24 C -0.013 4.013 25 H 0.199 0.801 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.273 0.727 29 H 0.148 0.852 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 -7.825 -12.927 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.111 4.111 3 C 0.085 3.915 4 N -0.134 5.134 5 C -0.460 4.460 6 H 0.131 0.869 7 C -0.155 4.155 8 N -0.443 5.443 9 Si 0.725 3.275 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.196 1.196 13 C 0.256 3.744 14 O -0.466 6.466 15 C -0.108 4.108 16 C -0.097 4.097 17 C -0.157 4.157 18 C -0.083 4.083 19 C -0.140 4.140 20 C 0.357 3.643 21 O -0.393 6.393 22 O -0.274 6.274 23 C -0.057 4.057 24 C -0.033 4.033 25 H 0.216 0.784 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.166 0.834 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.455 -7.188 -12.631 14.739 hybrid contribution 0.082 0.129 0.919 0.932 sum 2.537 -7.059 -11.712 13.908 Atomic orbital electron populations 1.24173 0.95201 1.01009 1.06035 1.22473 0.93750 0.99292 0.95619 1.18933 0.85187 0.85620 1.01759 1.43733 1.46790 1.10754 1.12088 1.19487 1.46944 0.95009 0.84542 0.86928 1.25296 0.94154 0.96097 1.00001 1.70378 1.18516 1.25443 1.29972 0.86423 0.80790 0.79285 0.81052 1.19468 1.21054 1.19554 1.17559 0.86375 0.87360 0.83092 1.90636 1.51763 1.20785 1.83435 1.20251 0.95152 0.98318 0.97113 1.22296 0.98489 0.92851 0.96028 1.21067 0.98739 1.01490 0.94362 1.21439 0.92218 0.95422 0.99183 1.18918 0.94997 1.04371 0.95740 1.21267 0.86021 0.77055 0.79979 1.90843 1.38435 1.35799 1.74214 1.86535 1.45441 1.64251 1.31157 1.23251 0.86441 1.02634 0.93380 1.21299 0.97036 0.94703 0.90239 0.78415 0.89240 0.89727 0.91555 0.83427 0.84967 0.84725 0.91876 0.88124 0.91871 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.81 18.90 29.55 0.56 -4.25 16 2 C -0.11 -2.32 8.71 -37.12 -0.32 -2.64 16 3 C 0.21 4.40 4.77 -6.83 -0.03 4.37 16 4 N -0.42 -10.35 2.69 -119.05 -0.32 -10.67 16 5 C -0.33 -9.01 9.08 -15.00 -0.14 -9.14 16 6 H 0.11 3.25 7.47 -52.48 -0.39 2.86 16 7 C 0.05 1.36 4.85 -17.45 -0.08 1.28 16 8 N -0.81 -19.82 8.88 55.50 0.49 -19.33 16 9 Si 0.90 19.64 29.69 -169.99 -5.05 14.59 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 13 C 0.47 11.46 7.35 -12.37 -0.09 11.37 16 14 O -0.58 -16.35 16.38 5.29 0.09 -16.26 16 15 C -0.10 -2.08 5.36 -105.02 -0.56 -2.64 16 16 C -0.08 -1.30 7.36 -39.08 -0.29 -1.58 16 17 C -0.14 -1.82 10.02 -39.70 -0.40 -2.22 16 18 C -0.06 -0.83 9.61 -39.07 -0.38 -1.20 16 19 C -0.14 -2.17 5.87 -105.03 -0.62 -2.79 16 20 C 0.51 7.83 7.90 34.61 0.27 8.11 16 21 O -0.50 -9.04 16.13 -19.24 -0.31 -9.35 16 22 O -0.36 -4.39 9.81 -40.53 -0.40 -4.79 16 23 C 0.04 0.33 10.56 101.05 1.07 1.39 16 24 C -0.01 -0.25 9.14 -38.74 -0.35 -0.60 16 25 H 0.20 3.17 7.80 -54.08 -0.42 2.75 16 26 H 0.09 1.97 7.06 -51.93 -0.37 1.60 16 27 H 0.09 1.54 4.35 -51.93 -0.23 1.31 16 28 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 29 H 0.15 2.55 4.12 -52.49 -0.22 2.34 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.13 1.37 7.60 -52.49 -0.40 0.97 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.14 2.87 7.54 -52.48 -0.40 2.47 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -31.45 311.08 -5.41 -36.86 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.24 Total: 4.81 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.36 Total: -0.55 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: 0.17 Total: -30.00 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.62 Total: -30.40 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.05 Total: 14.59 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.45 -5.41 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225601942.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.559 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds