Wall clock time and date at job start Tue Mar 31 2020 03:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20759 * 120.00168 * 2 1 4 4 C 1.50706 * 120.00100 * 180.02562 * 2 1 3 5 5 C 1.52992 * 109.47282 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.71093 * 59.96946 * 5 4 2 7 7 C 1.52879 * 109.62178 * 299.66313 * 5 4 2 8 8 O 1.42960 * 109.30218 * 188.11970 * 7 5 4 9 9 C 1.42964 * 114.16820 * 62.44134 * 8 7 5 10 10 C 1.53289 * 109.22429 * 297.42462 * 9 8 7 11 11 N 1.47145 * 108.38639 * 52.30202 * 10 9 8 12 12 C 1.34776 * 120.98451 * 129.44212 * 11 10 9 13 13 O 1.21287 * 120.00118 * 174.85371 * 12 11 10 14 14 C 1.50698 * 120.00127 * 354.57573 * 12 11 10 15 15 S 1.80995 * 109.47635 * 180.02562 * 14 12 11 16 16 C 1.76200 * 100.00340 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99457 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00150 * 180.02562 * 16 15 14 19 19 N 1.31639 * 119.99901 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00280 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47239 * 89.99579 * 20 18 16 22 22 H 1.48498 * 109.47492 * 209.99879 * 20 18 16 23 23 H 1.48508 * 109.47150 * 330.00013 * 20 18 16 24 24 H 1.09001 * 109.47004 * 270.00353 * 1 2 3 25 25 H 1.09006 * 109.46788 * 29.99515 * 1 2 3 26 26 H 1.08993 * 109.47422 * 149.99830 * 1 2 3 27 27 H 1.09001 * 109.46603 * 59.99356 * 4 2 1 28 28 H 1.09000 * 109.46704 * 300.00358 * 4 2 1 29 29 H 1.09000 * 109.58310 * 68.09797 * 7 5 4 30 30 H 1.09005 * 109.36154 * 307.99513 * 7 5 4 31 31 H 1.08994 * 109.51076 * 177.49552 * 9 8 7 32 32 H 1.09005 * 109.51020 * 57.34928 * 9 8 7 33 33 H 1.08998 * 109.68044 * 292.57334 * 10 9 8 34 34 H 1.09004 * 109.71257 * 172.04507 * 10 9 8 35 35 H 1.08997 * 109.47016 * 300.00220 * 14 12 11 36 36 H 1.09003 * 109.47201 * 60.00034 * 14 12 11 37 37 H 0.97001 * 119.99553 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 1 4.0327 -0.4537 0.8873 7 6 4.1387 -0.2308 -1.2524 8 8 5.5623 -0.1364 -1.3442 9 6 6.2244 -1.3955 -1.4865 10 6 5.9581 -2.2493 -0.2416 11 7 4.5052 -2.2972 -0.0138 12 6 3.8704 -3.4715 0.1722 13 8 2.6901 -3.4853 0.4510 14 6 4.6256 -4.7675 0.0276 15 16 3.5060 -6.1560 0.3354 16 6 4.6189 -7.5029 0.1073 17 1 5.6515 -7.3131 -0.1459 18 6 4.1682 -8.8076 0.2519 19 7 2.9094 -9.0388 0.5600 20 14 5.3477 -10.2356 0.0093 21 1 5.9866 -10.5757 1.3061 22 1 4.6006 -11.4141 -0.4986 23 1 6.3941 -9.8521 -0.9723 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.9971 -1.8763 -0.8908 28 1 1.9971 -1.8771 0.8891 29 1 3.7106 0.7697 -1.1912 30 1 3.7501 -0.7407 -2.1339 31 1 7.2968 -1.2327 -1.5938 32 1 5.8433 -1.9095 -2.3690 33 1 6.4507 -1.8027 0.6221 34 1 6.3384 -3.2586 -0.3998 35 1 5.0280 -4.8428 -0.9826 36 1 5.4437 -4.7936 0.7474 37 1 2.5944 -9.9507 0.6607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274846671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:52 Heat of formation + Delta-G solvation = -121.423703 kcal Electronic energy + Delta-G solvation = -20999.714606 eV Core-core repulsion = 17675.527133 eV Total energy + Delta-G solvation = -3324.187474 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.94306 -40.24532 -39.28033 -35.89723 -34.57820 -34.37985 -31.58964 -30.91350 -29.17691 -27.64798 -27.51852 -24.40500 -23.30301 -20.76554 -20.60236 -19.51902 -18.10974 -17.86277 -17.39796 -16.90749 -16.86548 -16.59090 -16.19749 -16.07376 -15.75805 -15.61413 -15.28385 -14.87780 -14.55583 -14.43137 -13.73172 -13.52169 -13.25587 -13.16853 -13.08794 -12.89438 -12.82176 -12.62151 -12.49720 -12.31290 -11.96231 -11.71812 -11.32715 -11.13678 -10.90465 -10.26577 -10.03809 -9.63523 -8.64883 -8.34510 -6.11487 0.93513 1.22140 1.42643 1.43906 1.49380 1.55189 1.91966 2.27466 2.74595 3.00270 3.12666 3.29034 3.56722 3.57862 3.87190 3.93040 3.98894 4.14030 4.18966 4.24206 4.26214 4.42758 4.46632 4.60745 4.62585 4.69063 4.78009 4.82454 4.91394 4.94967 5.16635 5.42358 5.42828 6.03259 6.16961 6.20600 6.50064 7.05900 7.07748 8.74417 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.023404 B = 0.004171 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.075450 B = 6711.679331 C = 7760.322148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.359 3.641 3 O -0.492 6.492 4 C -0.168 4.168 5 C 0.125 3.875 6 H 0.079 0.921 7 C 0.053 3.947 8 O -0.390 6.390 9 C 0.044 3.956 10 C 0.066 3.934 11 N -0.613 5.613 12 C 0.539 3.461 13 O -0.541 6.541 14 C -0.129 4.129 15 S -0.138 6.138 16 C -0.548 4.548 17 H 0.082 0.918 18 C 0.017 3.983 19 N -0.910 5.910 20 Si 0.995 3.005 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.258 1.258 24 H 0.109 0.891 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.053 0.947 31 H 0.137 0.863 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 16.486 -3.777 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.238 3.762 3 O -0.369 6.369 4 C -0.205 4.205 5 C 0.022 3.978 6 H 0.097 0.903 7 C -0.025 4.025 8 O -0.308 6.308 9 C -0.033 4.033 10 C -0.056 4.056 11 N -0.348 5.348 12 C 0.327 3.673 13 O -0.419 6.419 14 C -0.280 4.280 15 S 0.089 5.911 16 C -0.696 4.696 17 H 0.100 0.900 18 C -0.188 4.188 19 N -0.547 5.547 20 Si 0.817 3.183 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.182 1.182 24 H 0.127 0.873 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.071 0.929 31 H 0.154 0.846 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.397 17.066 -3.330 17.552 hybrid contribution 1.520 -1.411 -0.262 2.091 sum 3.917 15.655 -3.592 16.532 Atomic orbital electron populations 1.22254 0.91681 1.05701 1.05870 1.25160 0.93687 0.89200 0.68143 1.90333 1.72466 1.36008 1.38140 1.22739 0.93138 0.96991 1.07645 1.21662 0.91973 0.84037 1.00155 0.90348 1.23188 0.81678 1.02368 0.95220 1.87968 1.18861 1.29997 1.94005 1.23204 1.00056 0.84194 0.95884 1.22742 0.78971 1.03618 1.00239 1.48218 1.09510 1.04839 1.72243 1.20109 0.87011 0.84595 0.75548 1.90631 1.16747 1.86523 1.48006 1.23423 1.03172 0.95268 1.06122 1.85456 1.16710 0.96643 1.92291 1.23205 0.98136 0.92891 1.55324 0.90019 1.26052 0.97438 1.01422 0.93904 1.70169 1.16489 1.22048 1.45952 0.85009 0.77829 0.76550 0.78960 1.19431 1.20390 1.18220 0.87308 0.88759 0.88525 0.88314 0.85535 0.86257 0.92910 0.84578 0.92361 0.89102 0.87173 0.87531 0.87613 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.07 10.25 71.24 0.73 -2.34 16 2 C 0.36 7.88 6.99 29.10 0.20 8.08 16 3 O -0.49 -12.91 14.48 -1.45 -0.02 -12.93 16 4 C -0.17 -4.28 3.62 29.85 0.11 -4.17 16 5 C 0.12 3.21 2.82 44.82 0.13 3.34 16 6 H 0.08 2.10 8.10 -2.39 -0.02 2.08 16 7 C 0.05 1.25 5.82 71.94 0.42 1.67 16 8 O -0.39 -9.10 10.74 -148.98 -1.60 -10.70 16 9 C 0.04 0.78 6.98 72.08 0.50 1.28 16 10 C 0.07 1.32 6.55 86.35 0.57 1.89 16 11 N -0.61 -16.50 3.03 -794.32 -2.40 -18.91 16 12 C 0.54 18.67 7.55 87.66 0.66 19.33 16 13 O -0.54 -21.69 11.62 -3.05 -0.04 -21.72 16 14 C -0.13 -4.82 4.52 71.24 0.32 -4.50 16 15 S -0.14 -7.27 20.57 -56.49 -1.16 -8.44 16 16 C -0.55 -30.15 9.50 67.95 0.65 -29.51 16 17 H 0.08 4.18 7.80 -2.91 -0.02 4.15 16 18 C 0.02 0.93 5.49 84.86 0.47 1.40 16 19 N -0.91 -54.31 13.22 21.65 0.29 -54.02 16 20 Si 0.99 42.34 29.55 68.60 2.03 44.37 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.10 1.36 8.12 -2.39 -0.02 1.34 16 27 H 0.10 2.66 7.55 -2.39 -0.02 2.64 16 28 H 0.13 3.77 5.97 -2.69 -0.02 3.75 16 29 H 0.12 2.93 5.79 -2.39 -0.01 2.92 16 30 H 0.05 1.22 8.13 -2.38 -0.02 1.20 16 31 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.11 1.98 6.04 -2.38 -0.01 1.97 16 35 H 0.11 3.61 7.88 -2.40 -0.02 3.60 16 36 H 0.11 3.61 7.80 -2.39 -0.02 3.59 16 37 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -71.24 316.87 2.92 -68.33 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.07 Total: 17.55 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 4.75 Total: -3.53 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -2.12 Total: -72.93 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -1.66 Total: -45.36 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -7.27 SS G_CDS: -1.16 Total: -8.44 kcal Total: -71.24 2.92 -68.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274846671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.098 kcal (2) G-P(sol) polarization free energy of solvation -71.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds