Wall clock time and date at job start Tue Mar 31 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47109 * 78.97564 * 3 2 1 5 5 C 1.36932 * 119.99833 * 273.65390 * 4 3 2 6 6 H 1.08005 * 119.99843 * 180.02562 * 5 4 3 7 7 C 1.38811 * 120.00205 * 0.02733 * 5 4 3 8 8 N 1.31615 * 120.00057 * 27.20367 * 7 5 4 9 9 Si 1.86797 * 120.00068 * 207.20036 * 7 5 4 10 10 H 1.48493 * 109.47284 * 84.99226 * 9 7 5 11 11 H 1.48508 * 109.47172 * 204.98916 * 9 7 5 12 12 H 1.48506 * 109.47321 * 324.98991 * 9 7 5 13 13 S 1.65597 * 119.99834 * 93.65360 * 4 3 2 14 14 O 1.42104 * 104.27441 * 153.92943 * 13 4 3 15 15 O 1.42094 * 104.27837 * 26.07252 * 13 4 3 16 16 C 1.81397 * 104.45191 * 269.99934 * 13 4 3 17 17 C 1.53004 * 109.47411 * 180.02562 * 16 13 4 18 18 C 1.53001 * 109.47203 * 179.97438 * 17 16 13 19 19 H 1.09001 * 110.45205 * 52.39427 * 18 17 16 20 20 C 1.54507 * 110.50971 * 174.99971 * 18 17 16 21 21 C 1.54478 * 104.06226 * 118.64395 * 20 18 17 22 22 O 1.44430 * 104.80121 * 23.98199 * 21 20 18 23 23 C 1.44422 * 105.27163 * 319.48455 * 22 21 20 24 24 H 4.40648 * 5.51533 * 180.02562 * 4 1 2 25 25 H 1.08995 * 109.46999 * 318.97359 * 3 2 1 26 26 H 1.08997 * 109.46410 * 198.97544 * 3 2 1 27 27 H 0.97005 * 120.00419 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47026 * 60.00152 * 16 13 4 29 29 H 1.09001 * 109.47012 * 300.00344 * 16 13 4 30 30 H 1.09007 * 109.46581 * 59.99930 * 17 16 13 31 31 H 1.08997 * 109.46455 * 300.00245 * 17 16 13 32 32 H 1.09003 * 110.50939 * 237.29373 * 20 18 17 33 33 H 1.08998 * 110.51123 * 359.97438 * 20 18 17 34 34 H 1.08999 * 110.37209 * 142.80647 * 21 20 18 35 35 H 1.08998 * 110.37480 * 265.03716 * 21 20 18 36 36 H 1.08999 * 110.37237 * 281.68207 * 23 22 21 37 37 H 1.09003 * 110.37203 * 159.34796 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2633 -1.3557 5 6 3.2920 -1.5531 -1.7877 6 1 3.6525 -1.7476 -2.7871 7 6 2.9883 -2.6105 -0.9413 8 7 2.0915 -2.4558 0.0095 9 14 3.8525 -4.2532 -1.1517 10 1 5.1468 -4.2284 -0.4241 11 1 2.9972 -5.3363 -0.6034 12 1 4.1006 -4.5008 -2.5948 13 16 3.4960 0.9983 -2.3657 14 8 4.4623 0.4647 -3.2607 15 8 3.8217 2.0674 -1.4883 16 6 1.9421 1.3405 -3.2368 17 6 2.1491 2.5010 -4.2122 18 6 0.8386 2.7892 -4.9474 19 1 0.0245 2.9255 -4.2354 20 6 0.9856 4.0367 -5.8470 21 6 0.7296 3.5028 -7.2738 22 8 -0.0638 2.3108 -7.0848 23 6 0.5111 1.6493 -5.9370 24 1 -1.0500 0.0002 -0.0002 25 1 3.0096 -0.7744 0.6745 26 1 3.0088 0.9727 0.3342 27 1 1.8790 -3.1949 0.6008 28 1 1.1712 1.6064 -2.5136 29 1 1.6320 0.4533 -3.7888 30 1 2.9200 2.2347 -4.9354 31 1 2.4594 3.3883 -3.6604 32 1 0.2426 4.7888 -5.5815 33 1 1.9918 4.4484 -5.7677 34 1 0.1773 4.2371 -7.8603 35 1 1.6728 3.2593 -7.7629 36 1 1.4206 1.1197 -6.2203 37 1 -0.2090 0.9595 -5.4964 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292964447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:54 Heat of formation + Delta-G solvation = -53.643054 kcal Electronic energy + Delta-G solvation = -21368.111276 eV Core-core repulsion = 18046.862992 eV Total energy + Delta-G solvation = -3321.248284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.44427 -36.36748 -35.81289 -34.65754 -34.46176 -32.12182 -31.17390 -30.62939 -28.20641 -26.65458 -24.11043 -23.62178 -22.28780 -20.24142 -18.51860 -17.94744 -16.93540 -16.52446 -16.45601 -15.64318 -15.51787 -15.08416 -14.80522 -14.55050 -14.11100 -13.56164 -13.37500 -13.08401 -12.68994 -12.45194 -12.27154 -11.87035 -11.61078 -11.45672 -11.31232 -11.02577 -11.00133 -10.84865 -10.83276 -10.69040 -10.50687 -10.43722 -10.29452 -9.83898 -9.78396 -9.45938 -9.28086 -8.90132 -8.31289 -6.64214 -3.93881 1.46434 3.08649 3.15491 3.19497 3.58915 3.97472 3.97999 4.04095 4.35741 4.54992 4.62643 4.73961 4.89108 5.03415 5.11856 5.23866 5.29979 5.42063 5.49554 5.57839 5.63330 5.66986 5.78139 5.86202 5.92997 5.96771 6.16361 6.24415 6.35282 6.53951 6.75246 6.78525 6.92922 7.12759 7.26695 8.13797 8.55889 8.77128 8.96798 10.30239 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.005107 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.196396 B = 5481.014137 C = 5619.609598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.114 4.114 3 C 0.224 3.776 4 N -0.801 5.801 5 C -0.247 4.247 6 H 0.122 0.878 7 C 0.028 3.972 8 N -0.824 5.824 9 Si 0.930 3.070 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.265 1.265 13 S 2.487 3.513 14 O -0.981 6.981 15 O -0.996 6.996 16 C -0.667 4.667 17 C -0.094 4.094 18 C -0.114 4.114 19 H 0.084 0.916 20 C -0.156 4.156 21 C 0.044 3.956 22 O -0.380 6.380 23 C 0.048 3.952 24 H 0.198 0.802 25 H 0.125 0.875 26 H 0.082 0.918 27 H 0.276 0.724 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.127 5.864 -5.135 8.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.117 4.117 3 C 0.098 3.902 4 N -0.623 5.623 5 C -0.392 4.392 6 H 0.139 0.861 7 C -0.183 4.183 8 N -0.463 5.463 9 Si 0.755 3.245 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.189 1.189 13 S 2.585 3.415 14 O -0.970 6.970 15 O -0.986 6.986 16 C -0.786 4.786 17 C -0.133 4.133 18 C -0.134 4.134 19 H 0.102 0.898 20 C -0.193 4.193 21 C -0.033 4.033 22 O -0.299 6.299 23 C -0.029 4.029 24 H 0.215 0.785 25 H 0.143 0.857 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.561 6.397 -5.324 8.708 hybrid contribution -0.859 -0.918 -0.063 1.259 sum -3.420 5.479 -5.387 8.410 Atomic orbital electron populations 1.24303 0.95391 1.07048 1.02254 1.23664 0.94750 0.94880 0.98375 1.18769 0.83525 1.01707 0.86152 1.55227 1.71659 1.17893 1.17501 1.20058 1.35380 0.80970 1.02840 0.86062 1.25498 0.95791 1.00119 0.96939 1.70256 1.25027 1.33107 1.17949 0.85865 0.79403 0.79671 0.79511 1.19657 1.20813 1.18919 1.13251 0.80400 0.73967 0.73928 1.93374 1.59450 1.77560 1.66621 1.93355 1.84803 1.56786 1.63609 1.31228 1.30560 1.04987 1.11808 1.21264 0.96943 0.97476 0.97592 1.22541 0.98944 0.94357 0.97521 0.89755 1.23065 1.02878 0.98293 0.95100 1.23395 0.95702 0.87543 0.96676 1.89093 1.54693 1.37110 1.49034 1.23573 0.98984 0.95124 0.85210 0.78477 0.85745 0.90016 0.91355 0.87257 0.87016 0.91229 0.91101 0.90717 0.90231 0.89414 0.92304 0.91718 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.40 19.25 29.55 0.57 -4.83 16 2 C -0.11 -2.49 11.69 -37.12 -0.43 -2.92 16 3 C 0.22 4.96 5.43 -6.83 -0.04 4.93 16 4 N -0.80 -18.57 2.81 -62.77 -0.18 -18.74 16 5 C -0.25 -5.93 9.37 -15.06 -0.14 -6.07 16 6 H 0.12 2.89 7.26 -52.48 -0.38 2.51 16 7 C 0.03 0.64 4.98 -17.43 -0.09 0.55 16 8 N -0.82 -19.32 9.04 55.49 0.50 -18.82 16 9 Si 0.93 18.38 29.63 -169.99 -5.04 13.34 16 10 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 11 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 13 S 2.49 54.85 5.39 -107.50 -0.58 54.27 16 14 O -0.98 -24.04 16.81 -57.54 -0.97 -25.01 16 15 O -1.00 -23.57 16.54 -57.54 -0.95 -24.52 16 16 C -0.67 -12.19 6.06 37.16 0.23 -11.97 16 17 C -0.09 -1.49 4.44 -26.73 -0.12 -1.61 16 18 C -0.11 -1.58 3.11 -89.06 -0.28 -1.86 16 19 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 20 C -0.16 -1.79 6.74 -25.16 -0.17 -1.96 16 21 C 0.04 0.50 7.63 37.93 0.29 0.79 16 22 O -0.38 -5.55 11.65 -35.23 -0.41 -5.96 16 23 C 0.05 0.68 6.51 37.93 0.25 0.93 16 24 H 0.20 3.19 7.80 -54.09 -0.42 2.77 16 25 H 0.13 2.83 6.02 -51.93 -0.31 2.52 16 26 H 0.08 1.71 6.84 -51.93 -0.36 1.36 16 27 H 0.28 6.13 8.31 -40.82 -0.34 5.79 16 28 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 29 H 0.11 2.01 7.63 -51.92 -0.40 1.61 16 30 H 0.07 1.08 7.96 -51.93 -0.41 0.66 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.84 7.73 -51.93 -0.40 0.44 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.92 7.74 -51.93 -0.40 0.52 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -28.70 322.70 -7.87 -36.57 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.18 Total: 8.02 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 0.07 Total: -24.02 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.33 Total: -37.56 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -2.33 Total: -55.49 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.04 Total: 13.34 kcal Atomic # 16 Polarization: 54.85 SS G_CDS: -0.58 Total: 54.27 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.70 -7.87 -36.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292964447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.076 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds