Wall clock time and date at job start Tue Mar 31 2020 02:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33858 * 126.02609 * 2 1 4 4 N 1.20997 * 112.40309 * 180.29346 * 3 2 1 5 5 H 0.97001 * 124.94335 * 179.78118 * 4 3 2 6 6 C 1.36884 * 110.10251 * 359.74440 * 4 3 2 7 7 N 1.31660 * 127.34740 * 180.02562 * 6 4 3 8 8 C 1.34934 * 126.01775 * 179.85230 * 2 1 3 9 9 S 1.76201 * 127.88074 * 0.02562 * 8 2 1 10 10 O 1.42099 * 106.40695 * 156.16178 * 9 8 2 11 11 O 1.42100 * 106.40292 * 23.24009 * 9 8 2 12 12 N 1.65606 * 107.21776 * 269.70312 * 9 8 2 13 13 C 1.36939 * 120.00003 * 89.99987 * 12 9 8 14 14 H 1.07999 * 119.99704 * 231.36733 * 13 12 9 15 15 C 1.38807 * 120.00037 * 51.36292 * 13 12 9 16 16 N 1.31620 * 120.00265 * 23.68286 * 15 13 12 17 17 Si 1.86798 * 120.00141 * 203.67610 * 15 13 12 18 18 H 1.48497 * 109.47577 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.47037 * 300.00454 * 17 15 13 20 20 H 1.48503 * 109.46990 * 59.99967 * 17 15 13 21 21 C 1.46494 * 120.00004 * 269.99888 * 12 9 8 22 22 C 1.52996 * 117.50108 * 183.41861 * 21 12 9 23 23 C 1.53002 * 60.00155 * 252.50641 * 22 21 12 24 24 H 1.08997 * 109.47062 * 270.14769 * 1 2 3 25 25 H 1.09005 * 109.46622 * 30.14653 * 1 2 3 26 26 H 1.08996 * 109.47313 * 150.14285 * 1 2 3 27 27 H 0.97005 * 120.00480 * 359.97438 * 7 6 4 28 28 H 0.97001 * 120.00352 * 174.94899 * 16 15 13 29 29 H 1.09007 * 115.55095 * 329.12340 * 21 12 9 30 30 H 1.09003 * 117.49923 * 359.97438 * 22 21 12 31 31 H 1.09003 * 117.50057 * 145.01654 * 22 21 12 32 32 H 1.08992 * 117.50000 * 252.50780 * 23 22 21 33 33 H 1.08997 * 117.51251 * 107.47369 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2943 1.0826 0.0000 4 7 3.4703 0.7976 -0.0057 5 1 4.1975 1.4395 -0.0098 6 6 3.6247 -0.5625 -0.0047 7 7 4.7548 -1.2380 -0.0092 8 6 2.3005 -1.0914 0.0028 9 16 1.8118 -2.7843 0.0066 10 8 2.8986 -3.5170 -0.5423 11 8 0.4973 -2.8237 -0.5317 12 7 1.6832 -3.2539 1.5894 13 6 0.4906 -3.1191 2.2488 14 1 0.4562 -2.6196 3.2058 15 6 -0.6739 -3.6243 1.6873 16 7 -0.6104 -4.6017 0.8081 17 14 -2.3314 -2.9173 2.1795 18 1 -3.4097 -3.6247 1.4434 19 1 -2.5311 -3.0947 3.6403 20 1 -2.3709 -1.4706 1.8467 21 6 2.8452 -3.8134 2.2842 22 6 2.6421 -4.3024 3.7196 23 6 3.4220 -3.0132 3.4537 24 1 -0.3633 0.0026 1.0276 25 1 -0.3633 0.8887 -0.5161 26 1 -0.3634 -0.8912 -0.5116 27 1 5.6022 -0.7658 -0.0142 28 1 -1.4258 -5.0044 0.4706 29 1 3.5460 -4.3661 1.6583 30 1 1.6440 -4.2073 4.1473 31 1 3.2092 -5.1770 4.0384 32 1 4.5021 -3.0396 3.5976 33 1 2.9370 -2.0702 3.7059 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331449060.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:43 Heat of formation + Delta-G solvation = 39.023643 kcal Electronic energy + Delta-G solvation = -22341.060835 eV Core-core repulsion = 18920.290537 eV Total energy + Delta-G solvation = -3420.770298 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.74808 -38.66380 -37.53163 -36.43385 -36.00061 -35.22050 -34.93246 -32.31087 -31.07242 -29.47962 -26.64879 -24.49528 -22.98174 -22.28441 -22.06218 -21.00805 -20.44964 -18.81472 -18.44785 -17.65193 -17.31768 -16.82909 -16.39545 -15.96715 -15.77703 -15.45919 -15.03540 -14.46558 -14.17205 -13.94607 -13.43809 -13.19634 -13.02285 -12.97014 -12.71100 -12.43230 -12.21024 -12.13743 -12.10134 -11.97735 -11.69227 -11.48522 -11.02610 -10.81619 -10.65133 -10.42703 -9.19388 -8.85468 -8.25358 -6.00080 -0.01512 0.31490 1.18486 1.59701 1.61950 1.64024 1.71616 2.44440 2.52099 3.00401 3.13356 3.29371 3.41206 3.58614 3.71195 4.20169 4.24932 4.33712 4.46410 4.54954 4.64164 4.73871 4.94681 4.99256 5.08525 5.25193 5.29223 5.56055 5.61626 5.68008 5.92959 6.44079 7.00200 7.18080 7.40045 7.63155 8.81391 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.016426 B = 0.010027 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.175916 B = 2791.849303 C = 3520.988426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.219 3.781 3 O -0.006 6.006 4 N -0.581 5.581 5 H 0.471 0.529 6 C 0.429 3.571 7 N -0.762 5.762 8 C -0.833 4.833 9 S 2.630 3.370 10 O -1.030 7.030 11 O -0.973 6.973 12 N -0.801 5.801 13 C -0.306 4.306 14 H 0.090 0.910 15 C 0.026 3.974 16 N -0.836 5.836 17 Si 0.969 3.031 18 H -0.291 1.291 19 H -0.261 1.261 20 H -0.239 1.239 21 C 0.064 3.936 22 C -0.150 4.150 23 C -0.184 4.184 24 H 0.125 0.875 25 H 0.132 0.868 26 H 0.113 0.887 27 H 0.338 0.662 28 H 0.276 0.724 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 12.308 3.787 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.159 3.841 3 O -0.011 6.011 4 N -0.267 5.267 5 H 0.326 0.674 6 C 0.158 3.842 7 N -0.406 5.406 8 C -0.920 4.920 9 S 2.728 3.272 10 O -1.020 7.020 11 O -0.962 6.962 12 N -0.625 5.625 13 C -0.449 4.449 14 H 0.108 0.892 15 C -0.187 4.187 16 N -0.472 5.472 17 Si 0.791 3.209 18 H -0.217 1.217 19 H -0.185 1.185 20 H -0.162 1.162 21 C -0.045 4.045 22 C -0.189 4.189 23 C -0.224 4.224 24 H 0.143 0.857 25 H 0.150 0.850 26 H 0.131 0.869 27 H 0.155 0.845 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.703 11.281 2.660 11.612 hybrid contribution 0.573 1.602 -0.022 1.702 sum 1.276 12.883 2.638 13.212 Atomic orbital electron populations 1.21409 0.80103 1.08166 1.07622 1.23805 0.95433 0.81647 0.83251 1.83735 1.06278 1.31008 1.80084 1.43415 0.96285 1.08123 1.78876 0.67375 1.20365 0.94123 0.79395 0.90303 1.70848 0.98549 1.34610 1.36563 1.33162 0.98515 1.27792 1.32540 1.07044 0.71447 0.72913 0.75790 1.93295 1.57488 1.71587 1.79623 1.93332 1.37943 1.86167 1.78731 1.52186 1.13022 1.66390 1.30889 1.19107 0.82936 1.36653 1.06226 0.89248 1.26604 1.03994 0.93187 0.94960 1.69958 1.31446 1.19093 1.26708 0.85390 0.76422 0.80609 0.78512 1.21697 1.18520 1.16185 1.21419 0.91272 1.02165 0.89618 1.23118 1.02001 0.97477 0.96294 1.23228 0.99431 0.95921 1.03774 0.85732 0.85015 0.86908 0.84503 0.91443 0.88838 0.88089 0.87526 0.88046 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.22 10.16 71.24 0.72 -2.50 16 2 C 0.22 7.36 7.39 24.93 0.18 7.55 16 3 O -0.01 -0.18 11.14 73.24 0.82 0.64 16 4 N -0.58 -16.30 6.92 -54.88 -0.38 -16.68 16 5 H 0.47 8.78 8.96 -92.71 -0.83 7.95 16 6 C 0.43 16.79 8.47 134.86 1.14 17.94 16 7 N -0.76 -31.58 13.84 -54.82 -0.76 -32.34 16 8 C -0.83 -35.67 6.39 22.60 0.14 -35.52 16 9 S 2.63 137.11 5.57 -56.49 -0.31 136.79 16 10 O -1.03 -61.28 16.44 -128.00 -2.10 -63.39 16 11 O -0.97 -52.56 11.77 -128.00 -1.51 -54.07 16 12 N -0.80 -39.79 3.01 -322.95 -0.97 -40.76 16 13 C -0.31 -14.66 7.72 84.03 0.65 -14.01 16 14 H 0.09 3.96 7.64 -2.91 -0.02 3.93 16 15 C 0.03 1.27 4.04 84.86 0.34 1.61 16 16 N -0.84 -45.99 11.74 21.65 0.25 -45.73 16 17 Si 0.97 36.93 29.62 68.60 2.03 38.96 16 18 H -0.29 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 20 H -0.24 -7.93 7.11 99.48 0.71 -7.22 16 21 C 0.06 2.92 6.32 44.99 0.28 3.20 16 22 C -0.15 -5.60 9.82 30.59 0.30 -5.30 16 23 C -0.18 -6.74 10.35 30.60 0.32 -6.43 16 24 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 25 H 0.13 2.35 8.14 -2.38 -0.02 2.33 16 26 H 0.11 3.87 5.77 -2.39 -0.01 3.86 16 27 H 0.34 11.32 8.93 -92.70 -0.83 10.50 16 28 H 0.28 14.42 8.32 -92.71 -0.77 13.65 16 29 H 0.09 4.61 7.46 -2.38 -0.02 4.59 16 30 H 0.10 3.89 6.89 -2.39 -0.02 3.87 16 31 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.10 3.28 8.14 -2.39 -0.02 3.27 16 33 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -73.73 296.72 0.67 -73.06 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -0.48 Total: 37.00 kcal Atomic # 6 Polarization: -37.55 SS G_CDS: 4.09 Total: -33.47 kcal Atomic # 7 Polarization: -133.66 SS G_CDS: -1.86 Total: -135.52 kcal Atomic # 8 Polarization: -114.02 SS G_CDS: -2.79 Total: -116.82 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Atomic # 16 Polarization: 137.11 SS G_CDS: -0.31 Total: 136.79 kcal Total: -73.73 0.67 -73.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331449060.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.080 kcal (2) G-P(sol) polarization free energy of solvation -73.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds