Wall clock time and date at job start Tue Mar 31 2020 02:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49918 * 2 1 4 4 C 1.53036 * 109.49372 * 120.06480 * 2 1 3 5 5 C 1.53046 * 109.53927 * 181.34583 * 4 2 1 6 6 H 1.09000 * 109.49368 * 58.62076 * 5 4 2 7 7 C 1.50699 * 109.49779 * 178.68264 * 5 4 2 8 8 O 1.20823 * 120.00366 * 359.97438 * 7 5 4 9 9 O 1.34233 * 119.99719 * 180.02562 * 7 5 4 10 10 C 1.53189 * 109.31336 * 298.63505 * 5 4 2 11 11 N 1.46935 * 108.77418 * 54.63373 * 10 5 4 12 12 C 1.34771 * 120.62803 * 126.41375 * 11 10 5 13 13 O 1.21288 * 119.99790 * 179.97438 * 12 11 10 14 14 C 1.50695 * 120.00371 * 359.97438 * 12 11 10 15 15 S 1.81002 * 109.47247 * 179.97438 * 14 12 11 16 16 C 1.76196 * 100.00158 * 180.02562 * 15 14 12 17 17 H 1.08006 * 120.00186 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00399 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00320 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99547 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47321 * 90.00313 * 20 18 16 22 22 H 1.48500 * 109.47056 * 209.99853 * 20 18 16 23 23 H 1.48499 * 109.47366 * 329.99876 * 20 18 16 24 24 C 1.46996 * 118.75211 * 306.39315 * 11 10 5 25 25 H 1.09000 * 109.47337 * 300.00685 * 1 2 3 26 26 H 1.09003 * 109.46962 * 59.99855 * 1 2 3 27 27 H 1.08992 * 109.47809 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46472 * 301.36555 * 4 2 1 29 29 H 1.09003 * 109.46560 * 61.34241 * 4 2 1 30 30 H 0.96696 * 116.99848 * 180.02562 * 9 7 5 31 31 H 1.09001 * 109.58579 * 174.41761 * 10 5 4 32 32 H 1.08995 * 109.58826 * 294.84578 * 10 5 4 33 33 H 1.08997 * 109.47390 * 300.00035 * 14 12 11 34 34 H 1.09000 * 109.47331 * 60.00053 * 14 12 11 35 35 H 0.97001 * 120.00110 * 179.97438 * 19 18 16 36 36 H 1.09004 * 109.57815 * 293.82544 * 24 11 10 37 37 H 1.09007 * 109.62790 * 173.38404 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7227 1.2485 5 6 3.5708 -0.6941 1.2667 6 1 3.9154 0.3399 1.2554 7 6 4.0719 -1.3777 2.5127 8 8 3.2863 -1.8401 3.3057 9 8 5.3911 -1.4718 2.7421 10 6 4.1059 -1.4257 0.0317 11 7 3.5053 -0.8284 -1.1689 12 6 4.2819 -0.3855 -2.1774 13 8 3.7740 0.1051 -3.1634 14 6 5.7814 -0.4999 -2.0799 15 16 6.5368 0.1760 -3.5794 16 6 8.2397 -0.0793 -3.2059 17 1 8.5247 -0.5357 -2.2695 18 6 9.2151 0.3071 -4.1147 19 7 10.4873 0.1169 -3.8354 20 14 8.7223 1.0985 -5.7335 21 1 8.6502 2.5719 -5.5625 22 1 9.7310 0.7696 -6.7725 23 1 7.3941 0.5831 -6.1524 24 6 2.0413 -0.7235 -1.2497 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 1.6576 -0.2242 2.1390 29 1 1.6973 -1.7572 1.2354 30 1 5.6645 -1.9193 3.5545 31 1 5.1901 -1.3231 -0.0125 32 1 3.8386 -2.4809 0.0877 33 1 6.1327 0.0584 -1.2122 34 1 6.0597 -1.5485 -1.9742 35 1 11.1689 0.3867 -4.4707 36 1 1.6057 -1.7215 -1.2982 37 1 1.7633 -0.1576 -2.1390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398967813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:50 Heat of formation + Delta-G solvation = -139.276629 kcal Electronic energy + Delta-G solvation = -20778.114463 eV Core-core repulsion = 17453.152828 eV Total energy + Delta-G solvation = -3324.961635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.99205 -39.76754 -37.56447 -36.36980 -34.06935 -32.53300 -32.44408 -29.73936 -26.87150 -25.72851 -25.33159 -24.74421 -21.27828 -20.54950 -19.31598 -18.29038 -17.74649 -17.05528 -16.56666 -16.27340 -15.80332 -15.18561 -15.00578 -14.80335 -14.47425 -13.96051 -13.70995 -13.46309 -13.30750 -12.93014 -12.78933 -12.41243 -12.29370 -12.03267 -11.83096 -11.65491 -11.28622 -11.18413 -11.11355 -11.01975 -10.97679 -10.74231 -10.59484 -9.87181 -9.54021 -9.01603 -8.73558 -8.51218 -6.93947 -6.29930 -4.02034 1.85534 2.55505 2.75925 2.86156 3.15981 3.32287 3.49503 3.56171 4.18540 4.31664 4.37986 4.45073 4.56676 4.65882 4.81798 5.01845 5.04308 5.09232 5.12730 5.25285 5.33694 5.35779 5.45890 5.50906 5.61318 5.70138 5.74213 5.84153 5.89214 5.95816 6.05743 6.21473 6.42761 7.33533 7.59531 7.93064 8.34605 8.40785 9.16269 10.79270 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.004365 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.270972 B = 6413.398862 C = 7611.756583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.079 0.921 4 C -0.098 4.098 5 C -0.098 4.098 6 H 0.117 0.883 7 C 0.488 3.512 8 O -0.514 6.514 9 O -0.510 6.510 10 C 0.119 3.881 11 N -0.618 5.618 12 C 0.536 3.464 13 O -0.514 6.514 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.089 0.911 18 C 0.097 3.903 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.114 3.886 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.412 0.588 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.271 0.729 36 H 0.067 0.933 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.538 -3.026 12.606 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 H 0.097 0.903 4 C -0.136 4.136 5 C -0.118 4.118 6 H 0.135 0.865 7 C 0.330 3.670 8 O -0.402 6.402 9 O -0.322 6.322 10 C -0.005 4.005 11 N -0.354 5.354 12 C 0.324 3.676 13 O -0.388 6.388 14 C -0.275 4.275 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.107 0.893 18 C -0.112 4.112 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.008 4.008 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.271 0.729 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.422 -2.212 10.911 20.675 hybrid contribution 0.990 -0.544 1.229 1.669 sum -16.431 -2.756 12.140 20.615 Atomic orbital electron populations 1.21731 0.93819 1.02257 1.02291 1.21525 0.96419 1.00365 0.94266 0.90259 1.21524 0.91106 1.02380 0.98584 1.21490 0.98027 1.01941 0.90363 0.86513 1.23261 0.80065 0.76294 0.87388 1.90721 1.56945 1.45090 1.47456 1.84585 1.25959 1.73780 1.47843 1.21603 0.99903 0.96585 0.82403 1.48050 1.06519 1.62735 1.18069 1.20325 0.88812 0.76551 0.81923 1.90698 1.75019 1.42846 1.30238 1.23337 0.93118 1.05685 1.05319 1.84800 1.04924 1.80871 1.20955 1.22306 0.88335 1.47485 1.08744 0.89328 1.24701 0.94026 0.94299 0.98191 1.69937 0.99470 1.45744 1.36509 0.86748 0.80805 0.80930 0.83444 1.19206 1.19938 1.15926 1.21700 0.79334 1.00826 0.98974 0.92196 0.92027 0.92322 0.90536 0.90618 0.72901 0.87691 0.90678 0.88347 0.88380 0.91932 0.91470 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.20 37.16 0.34 -0.66 16 2 C -0.11 -0.92 2.87 -90.51 -0.26 -1.18 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.10 -0.83 3.74 -26.69 -0.10 -0.93 16 5 C -0.10 -0.89 2.78 -91.65 -0.25 -1.15 16 6 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 7 C 0.49 4.71 7.63 36.01 0.27 4.98 16 8 O -0.51 -6.20 16.74 -18.75 -0.31 -6.51 16 9 O -0.51 -4.17 13.36 -39.26 -0.52 -4.69 16 10 C 0.12 1.22 5.56 -3.71 -0.02 1.20 16 11 N -0.62 -7.93 2.97 -172.71 -0.51 -8.44 16 12 C 0.54 9.33 7.72 -10.99 -0.08 9.24 16 13 O -0.51 -10.78 15.28 5.55 0.08 -10.69 16 14 C -0.12 -2.34 4.50 36.00 0.16 -2.18 16 15 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 16 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 17 H 0.09 2.62 8.03 -52.48 -0.42 2.19 16 18 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 19 N -0.88 -26.30 13.97 55.49 0.78 -25.52 16 20 Si 0.86 21.56 27.74 -169.99 -4.72 16.84 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 24 C 0.11 1.23 5.72 -3.67 -0.02 1.21 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.41 1.66 9.10 45.56 0.41 2.08 16 31 H 0.10 1.12 5.93 -51.93 -0.31 0.81 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.72 7.69 -51.92 -0.40 1.32 16 34 H 0.10 1.73 7.94 -51.92 -0.41 1.32 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.22 7.01 -51.92 -0.36 0.85 16 LS Contribution 322.01 15.07 4.85 4.85 Total: -1.00 -34.89 322.01 -6.54 -41.43 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.45 Total: -0.49 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 0.25 Total: -1.24 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.26 Total: -33.96 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.75 Total: -21.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.72 Total: 16.84 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.89 -6.54 -41.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398967813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.844 kcal (2) G-P(sol) polarization free energy of solvation -34.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds