Wall clock time and date at job start Tue Mar 31 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34223 * 117.00064 * 2 1 4 4 O 1.20830 * 119.99901 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47580 * 180.02562 * 5 3 2 7 7 N 1.46493 * 109.47457 * 180.02562 * 6 5 3 8 8 C 1.46765 * 124.35316 * 270.00220 * 7 6 5 9 9 C 1.54831 * 105.49704 * 197.05968 * 8 7 6 10 10 C 1.54631 * 101.60220 * 334.56264 * 9 8 7 11 11 H 1.09002 * 110.48855 * 266.08223 * 10 9 8 12 12 S 1.81397 * 110.48383 * 143.57271 * 10 9 8 13 13 C 1.81397 * 103.00138 * 176.84126 * 12 10 9 14 14 C 1.50698 * 109.47357 * 179.97438 * 13 12 10 15 15 H 1.07991 * 120.00011 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00037 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99946 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00030 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47051 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47421 * 119.99755 * 18 16 14 21 21 H 1.48498 * 109.47127 * 239.99648 * 18 16 14 22 22 C 1.34418 * 124.35106 * 90.02524 * 7 6 5 23 23 O 1.21288 * 124.94305 * 359.60727 * 22 7 6 24 24 H 1.09002 * 109.46760 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46879 * 300.00257 * 1 2 3 26 26 H 1.09000 * 109.47017 * 60.00065 * 1 2 3 27 27 H 1.09005 * 109.47261 * 59.99821 * 5 3 2 28 28 H 1.09000 * 109.46954 * 300.00379 * 5 3 2 29 29 H 1.09005 * 109.46974 * 59.99641 * 6 5 3 30 30 H 1.09007 * 109.46935 * 300.00207 * 6 5 3 31 31 H 1.09001 * 110.23936 * 316.03618 * 8 7 6 32 32 H 1.08998 * 110.24401 * 77.94164 * 8 7 6 33 33 H 1.08999 * 111.07622 * 216.48807 * 9 8 7 34 34 H 1.08994 * 111.01534 * 92.61619 * 9 8 7 35 35 H 1.09005 * 109.47294 * 300.00274 * 13 12 10 36 36 H 1.09006 * 109.47177 * 59.99713 * 13 12 10 37 37 H 0.96998 * 119.99592 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.2903 2.8615 1.2127 9 6 7.6764 3.3726 0.7495 10 6 7.6843 2.9462 -0.7369 11 1 8.1658 1.9752 -0.8527 12 16 8.5239 4.1942 -1.7508 13 6 8.5020 3.4560 -3.4077 14 6 9.1743 4.3885 -4.3821 15 1 9.5749 5.3308 -4.0389 16 6 9.2786 4.0382 -5.7115 17 7 8.7911 2.8904 -6.1293 18 14 10.1125 5.1938 -6.9192 19 1 10.5714 6.4111 -6.2032 20 1 11.2795 4.5106 -7.5330 21 1 9.1492 5.5786 -7.9818 22 6 6.2205 2.8592 -1.1087 23 8 5.7925 2.8309 -2.2432 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9565 0.7805 -0.8892 28 1 3.9557 0.7808 0.8908 29 1 3.6101 3.2359 0.8911 30 1 3.6108 3.2364 -0.8890 31 1 5.8588 3.5495 1.9397 32 1 6.3790 1.8645 1.6442 33 1 8.4791 2.8823 1.3002 34 1 7.7453 4.4562 0.8448 35 1 9.0339 2.5047 -3.3886 36 1 7.4704 3.2892 -3.7176 37 1 8.8649 2.6438 -7.0645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594904019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:52 Heat of formation + Delta-G solvation = -146.800307 kcal Electronic energy + Delta-G solvation = -20209.464199 eV Core-core repulsion = 16884.176314 eV Total energy + Delta-G solvation = -3325.287886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.74416 -41.22208 -37.81247 -37.49561 -35.27853 -34.99537 -31.47308 -30.65294 -28.64298 -28.57685 -25.57397 -25.25445 -22.85383 -21.98819 -20.54825 -18.87094 -18.67494 -18.06144 -17.77679 -17.75495 -17.37823 -16.94716 -16.61186 -15.66209 -15.36366 -14.90443 -14.78877 -14.73458 -14.53534 -14.38438 -13.95851 -13.88484 -13.56995 -13.54754 -13.08146 -12.90764 -12.76616 -12.45516 -12.40736 -12.12281 -11.85539 -11.84415 -11.69310 -11.42245 -11.22855 -10.76322 -10.69035 -9.82424 -8.52418 -8.32289 -6.46737 0.72943 1.05988 1.36680 1.38852 1.43906 1.51890 1.61910 1.97412 2.16948 2.35933 3.01368 3.22970 3.55260 3.60401 3.85825 3.90811 4.03472 4.07578 4.27088 4.30047 4.36742 4.48322 4.59635 4.68661 4.72245 4.82302 4.94115 4.99963 5.13349 5.15403 5.29781 5.52420 5.56549 5.89429 5.97510 6.60464 6.61801 7.08387 7.20646 8.80337 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.003564 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.535304 B = 7855.480177 C = 8888.270589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.538 6.538 5 C -0.124 4.124 6 C 0.141 3.859 7 N -0.611 5.611 8 C 0.105 3.895 9 C -0.095 4.095 10 C -0.103 4.103 11 H 0.121 0.879 12 S -0.263 6.263 13 C 0.087 3.913 14 C -0.537 4.537 15 H 0.063 0.937 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.981 3.019 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.275 1.275 22 C 0.511 3.489 23 O -0.564 6.564 24 H 0.131 0.869 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.148 0.852 29 H 0.118 0.882 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.133 0.867 34 H 0.087 0.913 35 H 0.007 0.993 36 H 0.021 0.979 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.948 -6.432 21.469 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.315 3.685 4 O -0.428 6.428 5 C -0.163 4.163 6 C 0.018 3.982 7 N -0.345 5.345 8 C -0.016 4.016 9 C -0.133 4.133 10 C -0.235 4.235 11 H 0.139 0.861 12 S -0.034 6.034 13 C -0.061 4.061 14 C -0.576 4.576 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.804 3.196 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.201 1.201 22 C 0.296 3.704 23 O -0.442 6.442 24 H 0.150 0.850 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.166 0.834 29 H 0.136 0.864 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.151 0.849 34 H 0.106 0.894 35 H 0.025 0.975 36 H 0.039 0.961 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.056 -5.295 21.066 24.374 hybrid contribution -0.518 -0.797 -1.810 2.044 sum -11.574 -6.092 19.256 23.279 Atomic orbital electron populations 1.23567 0.74639 1.05763 1.02587 1.86504 1.25166 1.32761 1.83624 1.23809 0.92288 0.81237 0.71172 1.90682 1.68030 1.37222 1.46821 1.21766 0.86850 0.99948 1.07728 1.21090 0.77843 0.94667 1.04568 1.48291 1.06069 1.72561 1.07573 1.22602 0.88586 1.04660 0.85799 1.22679 0.99314 1.03398 0.87922 1.24069 0.94683 1.03134 1.01587 0.86122 1.86185 1.75315 1.33387 1.08528 1.20818 0.99010 0.96671 0.89592 1.21060 1.38645 1.04539 0.93380 0.91879 1.26027 0.95861 0.97272 0.99988 1.70122 1.46147 1.23392 1.16926 0.85169 0.78151 0.78516 0.77807 1.18569 1.19315 1.20072 1.21272 0.89703 0.74747 0.84685 1.90779 1.78742 1.51269 1.23441 0.85042 0.91255 0.92551 0.88454 0.83429 0.86422 0.92656 0.86702 0.87047 0.84895 0.89413 0.97476 0.96085 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.94 10.57 -51.34 -0.54 -7.48 16 3 C 0.47 10.15 7.96 71.23 0.57 10.71 16 4 O -0.54 -14.60 15.73 21.95 0.35 -14.26 16 5 C -0.12 -2.27 6.13 29.85 0.18 -2.08 16 6 C 0.14 3.10 5.22 86.38 0.45 3.55 16 7 N -0.61 -14.60 2.93 -817.28 -2.40 -17.00 16 8 C 0.11 1.37 7.36 86.95 0.64 2.01 16 9 C -0.09 -1.73 6.74 31.77 0.21 -1.52 16 10 C -0.10 -3.34 3.44 30.59 0.11 -3.23 16 11 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 12 S -0.26 -11.89 20.94 -56.49 -1.18 -13.07 16 13 C 0.09 5.07 5.43 71.24 0.39 5.46 16 14 C -0.54 -32.97 9.13 25.60 0.23 -32.74 16 15 H 0.06 3.79 7.71 -2.92 -0.02 3.77 16 16 C 0.01 0.53 5.46 84.65 0.46 0.99 16 17 N -0.93 -58.74 13.29 21.45 0.28 -58.45 16 18 Si 0.98 46.19 29.54 68.60 2.03 48.21 16 19 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 C 0.51 18.57 7.45 87.90 0.65 19.23 16 23 O -0.56 -27.79 15.52 -3.05 -0.05 -27.84 16 24 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 26 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 27 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.12 1.91 8.10 -2.38 -0.02 1.89 16 30 H 0.05 1.66 7.89 -2.38 -0.02 1.64 16 31 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.74 7.88 -2.39 -0.02 1.72 16 35 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.02 1.37 6.43 -2.39 -0.02 1.36 16 37 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -86.06 332.42 4.64 -81.42 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.06 Total: 4.52 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.09 Total: 3.94 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -2.11 Total: -75.45 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.24 Total: -49.58 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Atomic # 16 Polarization: -11.89 SS G_CDS: -1.18 Total: -13.07 kcal Total: -86.06 4.64 -81.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594904019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.380 kcal (2) G-P(sol) polarization free energy of solvation -86.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds