Wall clock time and date at job start Tue Mar 31 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00146 * 2 1 4 4 C 1.52999 * 109.47172 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47539 * 64.80831 * 4 3 2 6 6 C 1.36856 * 119.99562 * 4.26955 * 5 4 3 7 7 H 1.07997 * 119.99956 * 32.01193 * 6 5 4 8 8 C 1.39044 * 119.99608 * 212.01416 * 6 5 4 9 9 N 1.31370 * 120.00150 * 21.32213 * 8 6 5 10 10 Si 1.86802 * 119.99796 * 201.32763 * 8 6 5 11 11 H 1.48504 * 109.47075 * 4.99834 * 10 8 6 12 12 H 1.48494 * 109.47224 * 124.99721 * 10 8 6 13 13 H 1.48501 * 109.46982 * 245.00086 * 10 8 6 14 14 C 1.34769 * 120.00226 * 184.26332 * 5 4 3 15 15 O 1.21690 * 120.00067 * 179.21669 * 14 5 4 16 16 C 1.46902 * 120.00133 * 359.22037 * 14 5 4 17 17 C 1.38654 * 126.91537 * 113.86981 * 16 14 5 18 18 Cl 1.73599 * 127.34205 * 0.02562 * 17 16 14 19 19 C 1.39777 * 105.31449 * 180.27420 * 17 16 14 20 20 N 1.30855 * 107.89172 * 359.60332 * 19 17 16 21 21 N 1.28435 * 111.00326 * 0.41543 * 20 19 17 22 22 C 1.46495 * 125.18916 * 179.73370 * 21 20 19 23 23 H 1.09000 * 109.47206 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47158 * 300.00047 * 1 2 3 25 25 H 1.09002 * 109.47193 * 60.00242 * 1 2 3 26 26 H 1.09000 * 109.47042 * 60.00233 * 3 2 1 27 27 H 1.08999 * 109.47257 * 300.00122 * 3 2 1 28 28 H 1.09007 * 109.47317 * 304.80988 * 4 3 2 29 29 H 1.09000 * 109.47469 * 184.81270 * 4 3 2 30 30 H 0.97000 * 119.99651 * 184.98184 * 9 8 6 31 31 H 1.07998 * 126.05453 * 179.76043 * 19 17 16 32 32 H 1.09003 * 109.47726 * 354.39802 * 22 21 20 33 33 H 1.08999 * 109.47410 * 114.40247 * 22 21 20 34 34 H 1.09003 * 109.47558 * 234.40164 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9754 0.5602 -1.2508 6 6 3.0629 0.2690 -2.2283 7 1 2.1930 0.8956 -2.3588 8 6 3.2559 -0.8334 -3.0533 9 7 4.0377 -1.8154 -2.6653 10 14 2.4036 -0.9183 -4.7134 11 1 1.6823 0.3552 -4.9651 12 1 3.4154 -1.1330 -5.7789 13 1 1.4355 -2.0443 -4.7158 14 6 5.2787 0.2726 -1.4382 15 8 5.6421 -0.2590 -2.4707 16 6 6.2606 0.6009 -0.3960 17 6 7.0042 -0.2933 0.3589 18 17 6.9716 -2.0268 0.2717 19 6 7.7814 0.4984 1.2091 20 7 7.5084 1.7521 0.9522 21 7 6.6247 1.8502 0.0254 22 6 6.0884 3.1081 -0.5001 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8517 0.5709 0.8429 29 1 3.9786 2.1767 0.0856 30 1 4.2299 -2.5497 -3.2692 31 1 8.4847 0.1391 1.9457 32 1 6.4798 3.9418 0.0830 33 1 6.3858 3.2226 -1.5425 34 1 5.0006 3.0962 -0.4318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:19 Heat of formation + Delta-G solvation = 38.637863 kcal Electronic energy + Delta-G solvation = -21807.138956 eV Core-core repulsion = 18384.308223 eV Total energy + Delta-G solvation = -3422.830733 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97740 -38.37680 -36.97433 -35.77785 -34.15750 -32.95036 -31.93389 -29.93888 -28.80737 -26.79907 -25.85972 -25.19145 -22.33277 -21.46041 -21.03454 -19.30812 -17.61073 -16.36215 -16.03078 -15.80079 -15.53484 -14.75292 -14.66287 -14.26316 -14.07889 -13.79074 -13.50657 -13.34778 -12.57737 -12.55534 -12.54004 -11.94872 -11.41895 -11.39363 -11.18121 -10.99406 -10.92263 -10.79972 -10.62374 -10.34408 -10.13297 -9.81099 -9.08063 -8.94288 -8.71761 -8.26038 -7.96856 -7.02836 -5.95603 -3.74036 2.18298 2.50427 2.97571 3.30506 3.35179 3.40880 3.44747 4.12863 4.35039 4.41573 4.77145 4.92709 5.21199 5.31671 5.42108 5.46215 5.52036 5.52869 5.69937 5.77188 5.81526 5.86310 5.95211 6.07807 6.14473 6.25228 6.42577 6.71173 7.13373 7.57962 7.80108 8.18665 8.42064 8.97969 9.13063 9.62832 10.23963 11.03935 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.007740 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.993433 B = 3616.860721 C = 4199.392113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.071 3.929 4 C 0.099 3.901 5 N -0.427 5.427 6 C -0.319 4.319 7 H 0.086 0.914 8 C 0.056 3.944 9 N -0.782 5.782 10 Si 0.902 3.098 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.287 1.287 14 C 0.497 3.503 15 O -0.493 6.493 16 C 0.042 3.958 17 C -0.133 4.133 18 Cl -0.024 7.024 19 C 0.013 3.987 20 N -0.299 5.299 21 N -0.284 5.284 22 C 0.084 3.916 23 H 0.079 0.921 24 H 0.027 0.973 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.262 0.738 31 H 0.184 0.816 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 7.562 7.208 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C -0.006 4.006 4 C -0.024 4.024 5 N -0.149 5.149 6 C -0.446 4.446 7 H 0.104 0.896 8 C -0.156 4.156 9 N -0.417 5.417 10 Si 0.729 3.271 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.214 1.214 14 C 0.282 3.718 15 O -0.367 6.367 16 C -0.089 4.089 17 C -0.171 4.171 18 Cl 0.005 6.995 19 C -0.167 4.167 20 N -0.130 5.130 21 N -0.072 5.072 22 C -0.056 4.056 23 H 0.097 0.903 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.201 0.799 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.408 8.009 6.883 10.569 hybrid contribution -0.719 -0.916 -0.816 1.422 sum -1.127 7.094 6.067 9.402 Atomic orbital electron populations 1.22615 0.82881 1.02072 0.98679 1.88184 1.17769 1.26320 1.94905 1.22412 0.93302 0.85900 0.99009 1.21742 0.93302 0.97030 0.90373 1.43217 1.04850 1.53957 1.12826 1.18988 1.05619 1.09733 1.10272 0.89610 1.24972 0.97376 0.93820 0.99439 1.70052 1.31145 1.06286 1.34225 0.86310 0.78791 0.77730 0.84230 1.19900 1.20933 1.21385 1.16136 0.81029 0.88467 0.86160 1.90716 1.77571 1.41742 1.26635 1.22429 1.02373 0.84170 0.99900 1.21210 1.05424 0.86847 1.03629 1.98327 1.97940 1.05410 1.97859 1.23315 1.03124 0.87763 1.02451 1.73063 1.09666 1.22039 1.08212 1.45449 1.29220 1.06160 1.26377 1.22350 1.00638 0.82065 1.00579 0.90273 0.95462 0.94546 0.94388 0.92475 0.92610 0.92440 0.92745 0.79908 0.88420 0.89506 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -7.09 9.53 -35.23 -0.34 -7.43 16 3 C 0.07 1.22 5.38 37.16 0.20 1.42 16 4 C 0.10 1.91 5.53 -4.04 -0.02 1.88 16 5 N -0.43 -10.28 2.98 -116.22 -0.35 -10.63 16 6 C -0.32 -8.26 7.53 -15.01 -0.11 -8.37 16 7 H 0.09 2.10 6.16 -52.49 -0.32 1.77 16 8 C 0.06 1.55 4.35 -17.45 -0.08 1.47 16 9 N -0.78 -23.07 10.72 55.50 0.60 -22.48 16 10 Si 0.90 21.42 29.61 -169.99 -5.03 16.39 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 14 C 0.50 12.68 6.49 -12.76 -0.08 12.59 16 15 O -0.49 -14.63 13.70 5.20 0.07 -14.56 16 16 C 0.04 0.92 5.40 -82.00 -0.44 0.48 16 17 C -0.13 -2.78 6.89 -38.85 -0.27 -3.05 16 18 Cl -0.02 -0.50 29.24 -51.86 -1.52 -2.02 16 19 C 0.01 0.22 12.03 -17.39 -0.21 0.01 16 20 N -0.30 -5.29 11.89 30.61 0.36 -4.93 16 21 N -0.28 -5.15 3.67 -63.86 -0.23 -5.38 16 22 C 0.08 1.13 10.73 59.84 0.64 1.78 16 23 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.97 6.63 -51.93 -0.34 0.63 16 28 H 0.06 1.15 7.96 -51.92 -0.41 0.74 16 29 H 0.06 0.93 4.46 -51.93 -0.23 0.70 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.18 2.49 8.06 -52.49 -0.42 2.07 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.23 4.88 -51.93 -0.25 0.98 16 LS Contribution 303.32 15.07 4.57 4.57 Total: -1.00 -34.28 303.32 -4.78 -39.07 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -3.66 Total: -2.47 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 0.74 Total: 9.86 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.38 Total: -43.42 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.26 Total: -21.99 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.52 Total: -2.02 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.28 -4.78 -39.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.705 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds