Wall clock time and date at job start Tue Mar 31 2020 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00146 * 2 1 4 4 C 1.52999 * 109.47172 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47539 * 64.80831 * 4 3 2 6 6 C 1.36856 * 119.99562 * 4.26955 * 5 4 3 7 7 H 1.07997 * 119.99956 * 32.01193 * 6 5 4 8 8 C 1.39044 * 119.99608 * 212.01416 * 6 5 4 9 9 N 1.31370 * 120.00150 * 21.32213 * 8 6 5 10 10 Si 1.86802 * 119.99796 * 201.32763 * 8 6 5 11 11 H 1.48504 * 109.47075 * 4.99834 * 10 8 6 12 12 H 1.48494 * 109.47224 * 124.99721 * 10 8 6 13 13 H 1.48501 * 109.46982 * 245.00086 * 10 8 6 14 14 C 1.34769 * 120.00226 * 184.26332 * 5 4 3 15 15 O 1.21690 * 120.00067 * 179.21669 * 14 5 4 16 16 C 1.46902 * 120.00133 * 359.22037 * 14 5 4 17 17 C 1.38654 * 126.91537 * 113.86981 * 16 14 5 18 18 Cl 1.73599 * 127.34205 * 0.02562 * 17 16 14 19 19 C 1.39777 * 105.31449 * 180.27420 * 17 16 14 20 20 N 1.30855 * 107.89172 * 359.60332 * 19 17 16 21 21 N 1.28435 * 111.00326 * 0.41543 * 20 19 17 22 22 C 1.46495 * 125.18916 * 179.73370 * 21 20 19 23 23 H 1.09000 * 109.47206 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47158 * 300.00047 * 1 2 3 25 25 H 1.09002 * 109.47193 * 60.00242 * 1 2 3 26 26 H 1.09000 * 109.47042 * 60.00233 * 3 2 1 27 27 H 1.08999 * 109.47257 * 300.00122 * 3 2 1 28 28 H 1.09007 * 109.47317 * 304.80988 * 4 3 2 29 29 H 1.09000 * 109.47469 * 184.81270 * 4 3 2 30 30 H 0.97000 * 119.99651 * 184.98184 * 9 8 6 31 31 H 1.07998 * 126.05453 * 179.76043 * 19 17 16 32 32 H 1.09003 * 109.47726 * 354.39802 * 22 21 20 33 33 H 1.08999 * 109.47410 * 114.40247 * 22 21 20 34 34 H 1.09003 * 109.47558 * 234.40164 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9754 0.5602 -1.2508 6 6 3.0629 0.2690 -2.2283 7 1 2.1930 0.8956 -2.3588 8 6 3.2559 -0.8334 -3.0533 9 7 4.0377 -1.8154 -2.6653 10 14 2.4036 -0.9183 -4.7134 11 1 1.6823 0.3552 -4.9651 12 1 3.4154 -1.1330 -5.7789 13 1 1.4355 -2.0443 -4.7158 14 6 5.2787 0.2726 -1.4382 15 8 5.6421 -0.2590 -2.4707 16 6 6.2606 0.6009 -0.3960 17 6 7.0042 -0.2933 0.3589 18 17 6.9716 -2.0268 0.2717 19 6 7.7814 0.4984 1.2091 20 7 7.5084 1.7521 0.9522 21 7 6.6247 1.8502 0.0254 22 6 6.0884 3.1081 -0.5001 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8517 0.5709 0.8429 29 1 3.9786 2.1767 0.0856 30 1 4.2299 -2.5497 -3.2692 31 1 8.4847 0.1391 1.9457 32 1 6.4798 3.9418 0.0830 33 1 6.3858 3.2226 -1.5425 34 1 5.0006 3.0962 -0.4318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597755053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:18 Heat of formation + Delta-G solvation = 13.939538 kcal Electronic energy + Delta-G solvation = -21808.209956 eV Core-core repulsion = 18384.308223 eV Total energy + Delta-G solvation = -3423.901733 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.44776 -40.13573 -38.49857 -37.38560 -35.98167 -34.39857 -33.78330 -31.54132 -30.37911 -28.06010 -27.42571 -26.78301 -23.97451 -23.05968 -22.48670 -20.98975 -19.23656 -18.02964 -17.56646 -17.27469 -17.02989 -16.38524 -16.15661 -15.91752 -15.74911 -15.34799 -15.02141 -14.83785 -14.22040 -14.10719 -13.76132 -13.45317 -13.09062 -12.88414 -12.74428 -12.72139 -12.59409 -12.43111 -12.24578 -12.01637 -11.86990 -11.38697 -10.95359 -10.35223 -10.24435 -10.06025 -9.59696 -9.02896 -7.99118 -5.77875 0.59787 1.02857 1.43946 1.49158 1.53018 1.56720 1.82670 2.30269 2.52812 3.05645 3.08558 3.38980 3.64935 3.83311 4.03461 4.18299 4.22721 4.39380 4.41034 4.47325 4.52508 4.60190 4.66682 4.68177 4.85551 4.94815 4.98055 5.26433 5.55881 5.73271 6.18517 6.54006 6.96760 7.01443 7.21657 7.67536 8.32963 9.00127 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.007740 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.993433 B = 3616.860721 C = 4199.392113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.400 6.400 3 C 0.071 3.929 4 C 0.096 3.904 5 N -0.436 5.436 6 C -0.317 4.317 7 H 0.100 0.900 8 C 0.004 3.996 9 N -0.825 5.825 10 Si 0.957 3.043 11 H -0.252 1.252 12 H -0.301 1.301 13 H -0.285 1.285 14 C 0.497 3.503 15 O -0.547 6.547 16 C 0.011 3.989 17 C -0.150 4.150 18 Cl -0.036 7.036 19 C 0.021 3.979 20 N -0.285 5.285 21 N -0.273 5.273 22 C 0.073 3.927 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.093 0.907 30 H 0.250 0.750 31 H 0.222 0.778 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.569 10.041 8.596 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.319 6.319 3 C -0.006 4.006 4 C -0.026 4.026 5 N -0.156 5.156 6 C -0.444 4.444 7 H 0.118 0.882 8 C -0.204 4.204 9 N -0.462 5.462 10 Si 0.784 3.216 11 H -0.175 1.175 12 H -0.228 1.228 13 H -0.212 1.212 14 C 0.283 3.717 15 O -0.425 6.425 16 C -0.120 4.120 17 C -0.188 4.188 18 Cl -0.008 7.008 19 C -0.157 4.157 20 N -0.116 5.116 21 N -0.062 5.062 22 C -0.065 4.065 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.060 0.940 31 H 0.238 0.762 32 H 0.154 0.846 33 H 0.106 0.894 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.091 10.544 8.301 13.464 hybrid contribution -0.508 -1.568 -1.140 2.004 sum -1.599 8.976 7.161 11.594 Atomic orbital electron populations 1.22776 0.80668 1.02705 1.00390 1.88114 1.20404 1.28089 1.95303 1.22522 0.91584 0.85385 1.01061 1.21990 0.95319 0.97900 0.87416 1.43408 1.04462 1.53554 1.14195 1.19303 1.05676 1.08922 1.10523 0.88243 1.25796 0.98075 0.93905 1.02583 1.70196 1.34048 1.07122 1.34828 0.85436 0.77468 0.78575 0.80131 1.17533 1.22807 1.21160 1.16557 0.81818 0.87222 0.86149 1.90675 1.78822 1.43933 1.29038 1.21973 1.03057 0.86365 1.00636 1.21555 1.06151 0.86500 1.04608 1.98318 1.97995 1.06526 1.97937 1.23846 1.02757 0.86901 1.02171 1.73101 1.08978 1.21912 1.07600 1.45774 1.28619 1.06081 1.25741 1.22732 1.01139 0.81315 1.01354 0.90358 0.92447 0.93969 0.90216 0.92271 0.94244 0.88939 0.93990 0.76182 0.84577 0.89423 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -15.50 9.53 -148.98 -1.42 -16.92 16 3 C 0.07 2.27 5.38 71.98 0.39 2.66 16 4 C 0.10 3.55 5.53 86.38 0.48 4.02 16 5 N -0.44 -20.91 2.98 -639.82 -1.91 -22.81 16 6 C -0.32 -16.33 7.53 84.10 0.63 -15.70 16 7 H 0.10 4.74 6.16 -2.91 -0.02 4.72 16 8 C 0.00 0.24 4.35 84.96 0.37 0.61 16 9 N -0.83 -50.58 10.72 21.68 0.23 -50.34 16 10 Si 0.96 44.74 29.61 68.60 2.03 46.77 16 11 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 12 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 13 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 14 C 0.50 25.63 6.49 86.51 0.56 26.19 16 15 O -0.55 -33.58 13.70 -4.32 -0.06 -33.64 16 16 C 0.01 0.47 5.40 40.74 0.22 0.69 16 17 C -0.15 -6.17 6.89 22.74 0.16 -6.01 16 18 Cl -0.04 -1.54 29.24 -2.72 -0.08 -1.62 16 19 C 0.02 0.70 12.03 85.21 1.03 1.72 16 20 N -0.29 -9.23 11.89 -57.08 -0.68 -9.91 16 21 N -0.27 -9.31 3.67 -355.94 -1.31 -10.62 16 22 C 0.07 1.75 10.73 127.77 1.37 3.13 16 23 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 1.85 6.63 -2.39 -0.02 1.84 16 28 H 0.04 1.59 7.96 -2.38 -0.02 1.57 16 29 H 0.09 2.71 4.46 -2.39 -0.01 2.70 16 30 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.22 5.24 8.06 -2.91 -0.02 5.22 16 32 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.10 2.31 4.88 -2.39 -0.01 2.30 16 Total: -1.00 -77.03 303.32 4.40 -72.63 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.13 Total: 7.02 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 6.45 Total: 19.43 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -3.66 Total: -93.69 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -1.48 Total: -50.56 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -77.03 4.40 -72.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.572 kcal (2) G-P(sol) polarization free energy of solvation -77.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds