Wall clock time and date at job start Tue Mar 31 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20761 * 119.99982 * 2 1 4 4 C 1.50700 * 120.00219 * 179.97438 * 2 1 3 5 5 N 1.46500 * 115.56043 * 12.05253 * 4 2 1 6 6 S 1.65593 * 119.99874 * 81.70376 * 5 4 2 7 7 O 1.42103 * 104.27438 * 182.82888 * 6 5 4 8 8 O 1.42102 * 104.28035 * 310.68408 * 6 5 4 9 9 C 1.81395 * 104.44935 * 66.75758 * 6 5 4 10 10 C 1.53009 * 109.46933 * 172.19099 * 9 6 5 11 11 C 1.50694 * 115.55084 * 38.61559 * 10 9 6 12 12 H 1.08001 * 119.99603 * 270.60173 * 11 10 9 13 13 C 1.37875 * 120.00343 * 90.59772 * 11 10 9 14 14 N 1.31510 * 119.99884 * 3.66578 * 13 11 10 15 15 Si 1.86799 * 120.00318 * 183.66394 * 13 11 10 16 16 H 1.48501 * 109.46969 * 59.99922 * 15 13 11 17 17 H 1.48501 * 109.47389 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47054 * 300.00485 * 15 13 11 19 19 C 1.53003 * 117.49682 * 252.90445 * 10 9 6 20 20 C 1.53004 * 60.00046 * 252.51240 * 19 10 9 21 21 C 1.52999 * 117.49805 * 157.74423 * 4 2 1 22 22 C 1.53005 * 60.00133 * 107.49059 * 21 4 2 23 23 H 1.08995 * 109.47107 * 182.62951 * 1 2 3 24 24 H 1.08997 * 109.46899 * 302.63217 * 1 2 3 25 25 H 1.08999 * 109.46960 * 62.62898 * 1 2 3 26 26 H 0.97006 * 120.00060 * 261.70598 * 5 4 2 27 27 H 1.08999 * 109.47225 * 292.18552 * 9 6 5 28 28 H 1.08997 * 109.47334 * 52.19609 * 9 6 5 29 29 H 0.97001 * 120.00636 * 185.00962 * 14 13 11 30 30 H 1.09000 * 117.49798 * 0.02562 * 19 10 9 31 31 H 1.08993 * 117.49702 * 145.02465 * 19 10 9 32 32 H 1.08998 * 117.50064 * 252.51343 * 20 19 10 33 33 H 1.09000 * 117.51547 * 107.48161 * 20 19 10 34 34 H 1.08990 * 117.50331 * 0.02562 * 21 4 2 35 35 H 1.08999 * 117.49335 * 214.97554 * 21 4 2 36 36 H 1.08996 * 117.50418 * 107.48668 * 22 21 4 37 37 H 1.09001 * 117.49782 * 252.48808 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 0.0006 5 7 1.4573 -2.4989 -0.2748 6 16 1.0910 -2.9080 -1.8371 7 8 0.2617 -4.0553 -1.7136 8 8 0.5962 -1.7044 -2.4078 9 6 2.6874 -3.3530 -2.5746 10 6 2.4592 -3.9386 -3.9696 11 6 1.3758 -3.2781 -4.7826 12 1 0.3575 -3.6313 -4.7134 13 6 1.6845 -2.2229 -5.6146 14 7 2.9347 -1.8393 -5.7539 15 14 0.3270 -1.3381 -6.5440 16 1 -0.6404 -0.7609 -5.5764 17 1 0.9168 -0.2496 -7.3641 18 1 -0.3745 -2.3008 -7.4307 19 6 2.6537 -5.4463 -4.1433 20 6 3.6812 -4.4708 -4.7210 21 6 3.7015 -1.2890 -0.5134 22 6 3.4248 -1.4482 0.9829 23 1 -0.3633 -1.0265 0.0471 24 1 -0.3633 0.5542 0.8654 25 1 -0.3633 0.4725 -0.9126 26 1 1.1400 -3.0497 0.4579 27 1 3.3125 -2.4634 -2.6519 28 1 3.1841 -4.0928 -1.9469 29 1 3.1449 -1.0527 -6.2811 30 1 2.9438 -6.0209 -3.2637 31 1 1.9978 -5.9607 -4.8456 32 1 3.7013 -4.3435 -5.8033 33 1 4.6477 -4.4034 -4.2216 34 1 4.1047 -0.3345 -0.8516 35 1 4.0519 -2.1667 -1.0565 36 1 3.5931 -2.4305 1.4243 37 1 3.6461 -0.5985 1.6288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000632449272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:40 Heat of formation + Delta-G solvation = -53.121611 kcal Electronic energy + Delta-G solvation = -22214.568805 eV Core-core repulsion = 18893.343132 eV Total energy + Delta-G solvation = -3321.225673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96345 -36.97952 -36.75361 -36.17717 -35.05537 -32.20570 -32.03617 -29.82125 -28.36570 -25.54057 -23.70012 -22.73206 -21.16751 -19.86641 -19.37937 -18.50360 -17.08707 -16.94301 -16.23102 -15.91761 -15.02120 -14.79658 -14.68723 -14.58183 -14.20957 -13.98598 -13.46607 -13.10261 -12.47084 -12.15234 -12.02890 -11.85117 -11.80189 -11.49808 -11.25825 -11.20396 -11.10031 -10.96318 -10.85004 -10.59607 -10.51362 -10.35548 -10.29927 -10.06806 -9.65004 -9.13358 -9.01048 -8.47351 -8.12678 -6.17079 -4.34042 1.02617 1.89528 3.30250 3.35395 3.37428 3.47840 3.61909 3.90222 4.39747 4.45920 4.64811 4.75662 4.89176 5.04255 5.13397 5.19441 5.32596 5.44352 5.49775 5.64788 5.69814 5.77595 5.88853 5.95073 6.03840 6.23441 6.26221 6.33563 6.58199 6.70226 6.94451 7.09186 7.18448 7.49298 7.58388 7.75028 8.15530 8.75194 9.43863 10.89240 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.007802 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.295364 B = 3588.094162 C = 4124.300385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.399 3.601 3 O -0.460 6.460 4 C 0.038 3.962 5 N -1.098 6.098 6 S 2.620 3.380 7 O -0.969 6.969 8 O -0.936 6.936 9 C -0.566 4.566 10 C 0.043 3.957 11 C -0.542 4.542 12 H 0.068 0.932 13 C 0.096 3.904 14 N -0.866 5.866 15 Si 0.886 3.114 16 H -0.262 1.262 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.207 4.207 20 C -0.132 4.132 21 C -0.163 4.163 22 C -0.139 4.139 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.413 0.587 27 H 0.128 0.872 28 H 0.099 0.901 29 H 0.265 0.735 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 -0.308 12.822 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.274 3.726 3 O -0.334 6.334 4 C -0.054 4.054 5 N -0.852 5.852 6 S 2.717 3.283 7 O -0.959 6.959 8 O -0.926 6.926 9 C -0.698 4.698 10 C 0.041 3.959 11 C -0.579 4.579 12 H 0.086 0.914 13 C -0.111 4.111 14 N -0.500 5.500 15 Si 0.713 3.287 16 H -0.187 1.187 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.244 4.244 20 C -0.170 4.170 21 C -0.201 4.201 22 C -0.178 4.178 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.123 0.877 26 H 0.247 0.753 27 H 0.146 0.854 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.984 0.493 12.182 12.232 hybrid contribution -0.056 0.001 -0.153 0.163 sum 0.928 0.494 12.029 12.075 Atomic orbital electron populations 1.22111 0.93425 1.04926 1.04668 1.23834 0.92198 0.87575 0.68950 1.90385 1.72145 1.33708 1.37160 1.20932 0.87010 0.87226 1.10252 1.55720 1.68239 1.33857 1.27431 1.04891 0.77549 0.74475 0.71433 1.93508 1.64998 1.52477 1.84959 1.93536 1.77280 1.46163 1.75640 1.30214 1.20777 1.09939 1.08877 1.18190 0.98554 0.90241 0.88906 1.20550 0.93258 1.17434 1.26666 0.91401 1.24894 0.95401 0.96110 0.94670 1.69978 1.17223 1.23891 1.38912 0.86707 0.82708 0.79488 0.79845 1.18701 1.21011 1.19958 1.23165 1.05013 0.93899 1.02361 1.22479 0.91931 1.02270 1.00369 1.23809 0.92997 1.06262 0.97070 1.23279 0.96956 1.04442 0.93082 0.90178 0.89479 0.87677 0.75342 0.85359 0.88236 0.92500 0.91468 0.89727 0.88938 0.91842 0.86158 0.86228 0.87023 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 9.25 36.01 0.33 -2.38 16 2 C 0.40 6.23 6.59 -29.03 -0.19 6.04 16 3 O -0.46 -8.07 17.15 6.00 0.10 -7.97 16 4 C 0.04 0.53 2.48 -132.97 -0.33 0.20 16 5 N -1.10 -15.58 4.51 -0.40 0.00 -15.58 16 6 S 2.62 52.18 4.55 -107.50 -0.49 51.69 16 7 O -0.97 -21.39 18.08 -57.54 -1.04 -22.44 16 8 O -0.94 -21.71 15.63 -57.54 -0.90 -22.61 16 9 C -0.57 -11.29 4.73 37.16 0.18 -11.11 16 10 C 0.04 1.03 1.84 -155.65 -0.29 0.74 16 11 C -0.54 -14.68 6.96 -34.44 -0.24 -14.92 16 12 H 0.07 1.89 7.82 -52.49 -0.41 1.48 16 13 C 0.10 2.64 5.42 -17.82 -0.10 2.54 16 14 N -0.87 -23.76 12.21 55.43 0.68 -23.08 16 15 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.26 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.21 -4.45 9.88 -26.73 -0.26 -4.72 16 20 C -0.13 -2.98 8.95 -26.73 -0.24 -3.22 16 21 C -0.16 -2.15 8.83 -26.73 -0.24 -2.39 16 22 C -0.14 -1.43 10.09 -26.73 -0.27 -1.70 16 23 H 0.08 1.07 6.94 -51.93 -0.36 0.71 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 26 H 0.41 4.58 8.92 -34.47 -0.31 4.27 16 27 H 0.13 2.54 6.13 -51.92 -0.32 2.22 16 28 H 0.10 1.61 7.93 -51.93 -0.41 1.20 16 29 H 0.27 7.00 8.32 -40.82 -0.34 6.66 16 30 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 31 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 32 H 0.09 2.26 7.88 -51.93 -0.41 1.86 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.12 1.64 7.85 -51.93 -0.41 1.23 16 35 H 0.12 1.52 5.53 -51.93 -0.29 1.23 16 36 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -32.79 322.25 -8.46 -41.25 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.00 Total: 8.01 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: -1.64 Total: -30.90 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.67 Total: -38.66 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -1.84 Total: -53.01 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 52.18 SS G_CDS: -0.49 Total: 51.69 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.79 -8.46 -41.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000632449272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.867 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds