Wall clock time and date at job start Tue Mar 31 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20761 * 119.99982 * 2 1 4 4 C 1.50700 * 120.00219 * 179.97438 * 2 1 3 5 5 N 1.46500 * 115.56043 * 12.05253 * 4 2 1 6 6 S 1.65593 * 119.99874 * 81.70376 * 5 4 2 7 7 O 1.42103 * 104.27438 * 182.82888 * 6 5 4 8 8 O 1.42102 * 104.28035 * 310.68408 * 6 5 4 9 9 C 1.81395 * 104.44935 * 66.75758 * 6 5 4 10 10 C 1.53009 * 109.46933 * 172.19099 * 9 6 5 11 11 C 1.50694 * 115.55084 * 38.61559 * 10 9 6 12 12 H 1.08001 * 119.99603 * 270.60173 * 11 10 9 13 13 C 1.37875 * 120.00343 * 90.59772 * 11 10 9 14 14 N 1.31510 * 119.99884 * 3.66578 * 13 11 10 15 15 Si 1.86799 * 120.00318 * 183.66394 * 13 11 10 16 16 H 1.48501 * 109.46969 * 59.99922 * 15 13 11 17 17 H 1.48501 * 109.47389 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47054 * 300.00485 * 15 13 11 19 19 C 1.53003 * 117.49682 * 252.90445 * 10 9 6 20 20 C 1.53004 * 60.00046 * 252.51240 * 19 10 9 21 21 C 1.52999 * 117.49805 * 157.74423 * 4 2 1 22 22 C 1.53005 * 60.00133 * 107.49059 * 21 4 2 23 23 H 1.08995 * 109.47107 * 182.62951 * 1 2 3 24 24 H 1.08997 * 109.46899 * 302.63217 * 1 2 3 25 25 H 1.08999 * 109.46960 * 62.62898 * 1 2 3 26 26 H 0.97006 * 120.00060 * 261.70598 * 5 4 2 27 27 H 1.08999 * 109.47225 * 292.18552 * 9 6 5 28 28 H 1.08997 * 109.47334 * 52.19609 * 9 6 5 29 29 H 0.97001 * 120.00636 * 185.00962 * 14 13 11 30 30 H 1.09000 * 117.49798 * 0.02562 * 19 10 9 31 31 H 1.08993 * 117.49702 * 145.02465 * 19 10 9 32 32 H 1.08998 * 117.50064 * 252.51343 * 20 19 10 33 33 H 1.09000 * 117.51547 * 107.48161 * 20 19 10 34 34 H 1.08990 * 117.50331 * 0.02562 * 21 4 2 35 35 H 1.08999 * 117.49335 * 214.97554 * 21 4 2 36 36 H 1.08996 * 117.50418 * 107.48668 * 22 21 4 37 37 H 1.09001 * 117.49782 * 252.48808 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 0.0006 5 7 1.4573 -2.4989 -0.2748 6 16 1.0910 -2.9080 -1.8371 7 8 0.2617 -4.0553 -1.7136 8 8 0.5962 -1.7044 -2.4078 9 6 2.6874 -3.3530 -2.5746 10 6 2.4592 -3.9386 -3.9696 11 6 1.3758 -3.2781 -4.7826 12 1 0.3575 -3.6313 -4.7134 13 6 1.6845 -2.2229 -5.6146 14 7 2.9347 -1.8393 -5.7539 15 14 0.3270 -1.3381 -6.5440 16 1 -0.6404 -0.7609 -5.5764 17 1 0.9168 -0.2496 -7.3641 18 1 -0.3745 -2.3008 -7.4307 19 6 2.6537 -5.4463 -4.1433 20 6 3.6812 -4.4708 -4.7210 21 6 3.7015 -1.2890 -0.5134 22 6 3.4248 -1.4482 0.9829 23 1 -0.3633 -1.0265 0.0471 24 1 -0.3633 0.5542 0.8654 25 1 -0.3633 0.4725 -0.9126 26 1 1.1400 -3.0497 0.4579 27 1 3.3125 -2.4634 -2.6519 28 1 3.1841 -4.0928 -1.9469 29 1 3.1449 -1.0527 -6.2811 30 1 2.9438 -6.0209 -3.2637 31 1 1.9978 -5.9607 -4.8456 32 1 3.7013 -4.3435 -5.8033 33 1 4.6477 -4.4034 -4.2216 34 1 4.1047 -0.3345 -0.8516 35 1 4.0519 -2.1667 -1.0565 36 1 3.5931 -2.4305 1.4243 37 1 3.6461 -0.5985 1.6288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000632449272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:40 Heat of formation + Delta-G solvation = -76.617344 kcal Electronic energy + Delta-G solvation = -22215.587657 eV Core-core repulsion = 18893.343132 eV Total energy + Delta-G solvation = -3322.244524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.11010 -38.54905 -38.13768 -37.78660 -36.71802 -34.08635 -33.33386 -30.99076 -29.96749 -27.54668 -24.80631 -23.68513 -22.89462 -21.46584 -20.86317 -19.91114 -18.56046 -18.35193 -17.85463 -17.16100 -16.80912 -16.46142 -16.17234 -15.89892 -15.59757 -15.37340 -14.87424 -14.66107 -14.02138 -13.74747 -13.36142 -13.22983 -13.16792 -13.03320 -12.92373 -12.83937 -12.73291 -12.46458 -12.40935 -12.23845 -12.03259 -11.91882 -11.67118 -11.51598 -11.31674 -10.98744 -10.43295 -10.25179 -9.86963 -8.23835 -6.42321 -0.50997 0.74163 1.34357 1.38694 1.46893 1.96742 2.38207 2.62963 2.82548 2.99170 3.06096 3.34878 3.52557 3.56796 3.79526 3.91137 4.10000 4.16091 4.36556 4.45752 4.57664 4.58640 4.61967 4.65814 4.83580 4.88715 4.90634 5.02487 5.09906 5.12903 5.22848 5.44452 5.65215 5.70679 6.08801 6.19966 6.41198 6.67904 7.35593 8.81489 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.007802 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.295364 B = 3588.094162 C = 4124.300385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.391 3.609 3 O -0.488 6.488 4 C 0.013 3.987 5 N -1.073 6.073 6 S 2.629 3.371 7 O -0.996 6.996 8 O -0.979 6.979 9 C -0.562 4.562 10 C 0.009 3.991 11 C -0.553 4.553 12 H 0.048 0.952 13 C 0.060 3.940 14 N -0.882 5.882 15 Si 0.918 3.082 16 H -0.276 1.276 17 H -0.274 1.274 18 H -0.266 1.266 19 C -0.193 4.193 20 C -0.131 4.131 21 C -0.181 4.181 22 C -0.096 4.096 23 H 0.083 0.917 24 H 0.117 0.883 25 H 0.085 0.915 26 H 0.430 0.570 27 H 0.128 0.872 28 H 0.143 0.857 29 H 0.265 0.735 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 -1.297 14.958 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.269 3.731 3 O -0.364 6.364 4 C -0.080 4.080 5 N -0.833 5.833 6 S 2.726 3.274 7 O -0.986 6.986 8 O -0.969 6.969 9 C -0.695 4.695 10 C 0.007 3.993 11 C -0.591 4.591 12 H 0.066 0.934 13 C -0.145 4.145 14 N -0.517 5.517 15 Si 0.743 3.257 16 H -0.201 1.201 17 H -0.199 1.199 18 H -0.191 1.191 19 C -0.230 4.230 20 C -0.170 4.170 21 C -0.219 4.219 22 C -0.134 4.134 23 H 0.102 0.898 24 H 0.135 0.865 25 H 0.104 0.896 26 H 0.268 0.732 27 H 0.146 0.854 28 H 0.161 0.839 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.164 0.836 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.017 -0.524 14.310 14.461 hybrid contribution -0.393 0.294 -0.769 0.912 sum 1.624 -0.230 13.541 13.640 Atomic orbital electron populations 1.22186 0.92890 1.05498 1.05070 1.24233 0.92908 0.88055 0.67922 1.90371 1.72666 1.34673 1.38730 1.21012 0.87310 0.85976 1.13654 1.54989 1.68332 1.34103 1.25874 1.04284 0.77427 0.73326 0.72344 1.93464 1.66146 1.53267 1.85747 1.93489 1.78376 1.47640 1.77354 1.30119 1.20997 1.11006 1.07345 1.18343 0.98397 0.91959 0.90639 1.20725 0.93481 1.17677 1.27211 0.93416 1.25375 0.96729 0.96888 0.95542 1.70013 1.17757 1.24222 1.39675 0.86216 0.81136 0.79250 0.79106 1.20090 1.19851 1.19051 1.23243 1.03690 0.92876 1.03174 1.22395 0.92882 1.02780 0.98943 1.23898 0.92038 1.06064 0.99916 1.23524 0.91672 1.06821 0.91392 0.89805 0.86461 0.89604 0.73187 0.85408 0.83918 0.92545 0.87872 0.90589 0.91704 0.89493 0.87372 0.85613 0.83597 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.46 9.25 71.24 0.66 -4.80 16 2 C 0.39 11.85 6.59 29.10 0.19 12.04 16 3 O -0.49 -16.95 17.15 -1.45 -0.02 -16.98 16 4 C 0.01 0.32 2.48 2.86 0.01 0.33 16 5 N -1.07 -27.86 4.51 -155.18 -0.70 -28.56 16 6 S 2.63 101.98 4.55 -56.49 -0.26 101.72 16 7 O -1.00 -43.00 18.08 -127.65 -2.31 -45.31 16 8 O -0.98 -45.97 15.63 -127.65 -2.00 -47.97 16 9 C -0.56 -21.24 4.73 71.99 0.34 -20.90 16 10 C 0.01 0.40 1.84 -52.92 -0.10 0.30 16 11 C -0.55 -30.30 6.96 25.60 0.18 -30.13 16 12 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 13 C 0.06 3.30 5.42 84.65 0.46 3.76 16 14 N -0.88 -48.78 12.21 21.45 0.26 -48.52 16 15 Si 0.92 45.08 29.54 68.60 2.03 47.11 16 16 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 17 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 C -0.19 -7.87 9.88 30.60 0.30 -7.57 16 20 C -0.13 -5.75 8.95 30.60 0.27 -5.48 16 21 C -0.18 -4.34 8.83 30.60 0.27 -4.07 16 22 C -0.10 -1.58 10.09 30.60 0.31 -1.27 16 23 H 0.08 2.17 6.94 -2.39 -0.02 2.16 16 24 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.43 8.15 8.92 -96.74 -0.86 7.29 16 27 H 0.13 4.86 6.13 -2.39 -0.01 4.85 16 28 H 0.14 4.03 7.93 -2.39 -0.02 4.01 16 29 H 0.27 14.14 8.32 -92.71 -0.77 13.37 16 30 H 0.10 3.44 8.07 -2.39 -0.02 3.42 16 31 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 32 H 0.06 3.18 7.88 -2.39 -0.02 3.16 16 33 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.11 2.85 7.85 -2.39 -0.02 2.83 16 35 H 0.13 2.83 5.53 -2.39 -0.01 2.81 16 36 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -72.32 322.25 0.12 -72.19 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.23 Total: 24.08 kcal Atomic # 6 Polarization: -60.67 SS G_CDS: 2.89 Total: -57.77 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -0.44 Total: -77.08 kcal Atomic # 8 Polarization: -105.92 SS G_CDS: -4.33 Total: -110.25 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 101.98 SS G_CDS: -0.26 Total: 101.72 kcal Total: -72.32 0.12 -72.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000632449272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.425 kcal (2) G-P(sol) polarization free energy of solvation -72.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds