Wall clock time and date at job start Tue Mar 31 2020 02:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.44927 * 2 1 4 4 C 1.53036 * 109.46234 * 240.02682 * 2 1 3 5 5 C 1.53187 * 109.33909 * 301.36304 * 4 2 1 6 6 N 1.46931 * 108.77858 * 305.34763 * 5 4 2 7 7 C 1.34772 * 120.63173 * 233.63340 * 6 5 4 8 8 O 1.21277 * 119.99811 * 179.97438 * 7 6 5 9 9 C 1.50704 * 120.00006 * 359.97438 * 7 6 5 10 10 S 1.80999 * 109.47111 * 180.02562 * 9 7 6 11 11 C 1.76197 * 100.00038 * 180.02562 * 10 9 7 12 12 H 1.07997 * 119.99779 * 359.97438 * 11 10 9 13 13 C 1.38802 * 119.99856 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99890 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99781 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47425 * 60.00101 * 15 13 11 17 17 H 1.48505 * 109.47019 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47409 * 299.99831 * 15 13 11 19 19 C 1.46925 * 118.73466 * 53.60925 * 6 5 4 20 20 C 1.53109 * 109.44561 * 120.00685 * 2 1 3 21 21 H 1.08999 * 109.51108 * 178.62441 * 20 2 1 22 22 C 1.50703 * 109.49186 * 298.69523 * 20 2 1 23 23 O 1.20824 * 119.99623 * 359.85292 * 22 20 2 24 24 O 1.34222 * 120.00048 * 179.85979 * 22 20 2 25 25 H 1.08996 * 109.47644 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47393 * 299.97185 * 1 2 3 27 27 H 1.09003 * 109.47046 * 59.97206 * 1 2 3 28 28 H 1.09002 * 109.49886 * 181.39426 * 4 2 1 29 29 H 1.09000 * 109.49395 * 61.32903 * 4 2 1 30 30 H 1.09004 * 109.58908 * 65.13475 * 5 4 2 31 31 H 1.09007 * 109.58837 * 185.55836 * 5 4 2 32 32 H 1.09001 * 109.47103 * 299.99900 * 9 7 6 33 33 H 1.08999 * 109.47147 * 60.00424 * 9 7 6 34 34 H 0.97000 * 119.99406 * 180.02562 * 14 13 11 35 35 H 1.08995 * 109.58986 * 66.17814 * 19 6 5 36 36 H 1.09003 * 109.58612 * 186.60908 * 19 6 5 37 37 H 0.96705 * 117.00181 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 1.4996 -2.1542 -1.2648 6 7 1.8625 -2.8096 -0.0008 7 6 2.5164 -3.9881 -0.0013 8 8 2.8107 -4.5187 1.0487 9 6 2.8818 -4.6465 -1.3068 10 16 3.7445 -6.2030 -0.9767 11 6 4.0449 -6.7423 -2.6270 12 1 3.7120 -6.1414 -3.4604 13 6 4.7084 -7.9397 -2.8559 14 7 5.1137 -8.6722 -1.8401 15 14 5.0262 -8.5117 -4.6055 16 1 5.8534 -7.5022 -5.3139 17 1 5.7463 -9.8103 -4.5786 18 1 3.7321 -8.6774 -5.3150 19 6 1.4994 -2.1555 1.2637 20 6 2.0397 -0.7220 1.2502 21 1 3.1294 -0.7441 1.2391 22 6 1.5639 0.0064 2.4807 23 8 0.8889 1.0024 2.3699 24 8 1.8900 -0.4511 3.6997 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5134 0.8902 27 1 -0.3633 0.5143 -0.8898 28 1 3.1296 -0.7429 -1.2381 29 1 1.6963 -0.1933 -2.1397 30 1 0.4146 -2.1348 -1.3679 31 1 1.9382 -2.7015 -2.0993 32 1 1.9757 -4.8478 -1.8783 33 1 3.5322 -3.9843 -1.8781 34 1 5.5777 -9.5089 -2.0001 35 1 0.4145 -2.1360 1.3667 36 1 1.9380 -2.7034 2.0977 37 1 1.5614 0.0495 4.4590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693434517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:59 Heat of formation + Delta-G solvation = -155.884315 kcal Electronic energy + Delta-G solvation = -20871.715046 eV Core-core repulsion = 17546.033248 eV Total energy + Delta-G solvation = -3325.681798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.05032 -40.78746 -38.74987 -37.15422 -34.75865 -34.55907 -32.89343 -30.73214 -28.82539 -27.67184 -25.75138 -25.45843 -22.99602 -21.22174 -19.89053 -19.23193 -18.95180 -18.31861 -17.46087 -17.38454 -16.85958 -16.63024 -16.40474 -15.85887 -15.68298 -15.40592 -14.71293 -14.54230 -14.42868 -14.41526 -13.62160 -13.50954 -13.15777 -13.05341 -12.84793 -12.69097 -12.61719 -12.58693 -12.38211 -11.99433 -11.84420 -11.69504 -11.58789 -11.28117 -11.10732 -10.86586 -10.23858 -9.70758 -8.65180 -8.32459 -6.10732 1.04767 1.27888 1.45787 1.47295 1.56087 1.56652 1.93604 2.22165 2.29790 3.01858 3.25145 3.44779 3.63067 3.73693 3.85375 3.96407 4.10790 4.27813 4.36531 4.39416 4.42716 4.48977 4.65776 4.67112 4.73696 4.77919 4.96961 5.09709 5.18850 5.27961 5.42012 5.43786 5.47263 5.67529 6.21377 6.24611 6.96605 7.08818 7.11120 8.76479 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.034603 B = 0.003572 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.990100 B = 7837.136472 C = 8437.119806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.070 4.070 3 H 0.086 0.914 4 C -0.123 4.123 5 C 0.093 3.907 6 N -0.604 5.604 7 C 0.535 3.465 8 O -0.563 6.563 9 C -0.123 4.123 10 S -0.153 6.153 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.014 3.986 14 N -0.912 5.912 15 Si 0.997 3.003 16 H -0.261 1.261 17 H -0.281 1.281 18 H -0.261 1.261 19 C 0.125 3.875 20 C -0.090 4.090 21 H 0.113 0.887 22 C 0.495 3.505 23 O -0.527 6.527 24 O -0.515 6.515 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.271 0.729 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.486 20.610 1.636 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.089 4.089 3 H 0.105 0.895 4 C -0.161 4.161 5 C -0.028 4.028 6 N -0.338 5.338 7 C 0.323 3.677 8 O -0.441 6.441 9 C -0.274 4.274 10 S 0.074 5.926 11 C -0.694 4.694 12 H 0.103 0.897 13 C -0.191 4.191 14 N -0.548 5.548 15 Si 0.819 3.181 16 H -0.186 1.186 17 H -0.206 1.206 18 H -0.186 1.186 19 C 0.002 3.998 20 C -0.110 4.110 21 H 0.131 0.869 22 C 0.338 3.662 23 O -0.417 6.417 24 O -0.328 6.328 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -9.021 19.729 2.889 21.886 hybrid contribution -0.108 0.272 -1.121 1.158 sum -9.129 20.001 1.769 22.057 Atomic orbital electron populations 1.22112 0.94028 1.02128 1.03433 1.20987 0.97182 0.99306 0.91420 0.89519 1.21972 1.01420 0.94190 0.98537 1.22181 1.01994 0.93968 0.84666 1.48007 1.57270 1.20266 1.08232 1.20165 0.76549 0.80815 0.90160 1.90689 1.54657 1.64231 1.34531 1.23372 1.04860 1.00865 0.98292 1.85618 1.73482 1.20482 1.13010 1.23172 1.43910 1.10133 0.92144 0.89743 1.26115 0.94283 0.95488 1.03170 1.70183 1.37524 1.13882 1.33242 0.85018 0.78921 0.77536 0.76614 1.18578 1.20590 1.18605 1.21408 1.00632 0.90449 0.87275 1.21499 1.03462 0.95142 0.90941 0.86918 1.23191 0.75810 0.82217 0.85014 1.90670 1.36945 1.26647 1.87455 1.84569 1.72630 1.58435 1.17213 0.92496 0.92071 0.90787 0.91248 0.87122 0.88879 0.88624 0.87231 0.87096 0.92040 0.89597 0.89923 0.70918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.13 71.98 0.59 -1.76 16 2 C -0.07 -1.05 2.35 -10.75 -0.03 -1.08 16 3 H 0.09 1.28 8.07 -2.39 -0.02 1.26 16 4 C -0.12 -1.64 5.62 30.67 0.17 -1.47 16 5 C 0.09 1.61 5.87 86.36 0.51 2.12 16 6 N -0.60 -15.39 2.97 -818.90 -2.43 -17.82 16 7 C 0.54 19.56 7.72 87.66 0.68 20.23 16 8 O -0.56 -25.87 15.27 -3.02 -0.05 -25.92 16 9 C -0.12 -4.74 4.50 71.24 0.32 -4.42 16 10 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 11 C -0.55 -30.63 9.50 67.95 0.65 -29.98 16 12 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 13 C 0.01 0.80 5.49 84.86 0.47 1.27 16 14 N -0.91 -55.64 13.22 21.65 0.29 -55.36 16 15 Si 1.00 42.87 29.55 68.60 2.03 44.90 16 16 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 C 0.13 2.86 5.18 86.36 0.45 3.31 16 20 C -0.09 -1.67 2.56 -11.44 -0.03 -1.70 16 21 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 22 C 0.50 9.26 7.34 71.24 0.52 9.78 16 23 O -0.53 -11.60 14.51 21.97 0.32 -11.29 16 24 O -0.51 -8.16 13.35 -51.34 -0.69 -8.85 16 25 H 0.06 0.83 4.98 -2.39 -0.01 0.82 16 26 H 0.06 1.12 5.64 -2.39 -0.01 1.10 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.30 6.69 -2.38 -0.02 1.28 16 31 H 0.10 1.65 5.93 -2.38 -0.01 1.64 16 32 H 0.11 3.79 7.94 -2.40 -0.02 3.77 16 33 H 0.11 3.81 7.69 -2.40 -0.02 3.79 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.09 1.73 6.69 -2.39 -0.02 1.71 16 36 H 0.08 2.33 7.01 -2.39 -0.02 2.31 16 37 H 0.43 2.83 9.10 -74.05 -0.67 2.15 16 Total: -1.00 -77.89 313.47 3.02 -74.86 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.43 Total: 12.74 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 4.29 Total: -3.71 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -2.15 Total: -73.18 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -0.41 Total: -46.05 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -77.89 3.02 -74.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693434517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.020 kcal (2) G-P(sol) polarization free energy of solvation -77.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds