Wall clock time and date at job start Tue Mar 31 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00130 * 2 1 4 4 H 1.48504 * 109.47019 * 270.00442 * 3 2 1 5 5 H 1.48502 * 109.46830 * 29.99742 * 3 2 1 6 6 H 1.48497 * 109.47160 * 149.99953 * 3 2 1 7 7 C 1.37881 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99768 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00011 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99884 * 269.99501 * 10 9 7 12 12 C 1.52999 * 109.47507 * 270.00494 * 11 10 9 13 13 C 1.53003 * 117.49748 * 243.62506 * 12 11 10 14 14 C 1.52992 * 117.50002 * 174.99956 * 12 11 10 15 15 C 1.34777 * 120.00258 * 90.00155 * 10 9 7 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 10 9 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 10 9 18 18 S 1.81408 * 109.46846 * 179.97438 * 17 15 10 19 19 C 1.81394 * 102.99810 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47203 * 179.97438 * 19 18 17 21 21 O 1.20832 * 119.99722 * 359.97438 * 20 19 18 22 22 O 1.34221 * 120.00219 * 179.97438 * 20 19 18 23 23 H 0.96998 * 120.00158 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47308 * 59.99627 * 9 7 2 25 25 H 1.09000 * 109.46976 * 299.99772 * 9 7 2 26 26 H 1.09005 * 109.47121 * 30.00515 * 11 10 9 27 27 H 1.08997 * 109.47160 * 150.00168 * 11 10 9 28 28 H 1.09002 * 115.54589 * 29.32423 * 12 11 10 29 29 H 1.08995 * 117.49876 * 359.97438 * 13 12 11 30 30 H 1.09002 * 117.49846 * 145.02378 * 13 12 11 31 31 H 1.09007 * 117.49671 * 214.97834 * 14 12 11 32 32 H 1.09002 * 117.50190 * 359.97438 * 14 12 11 33 33 H 1.09000 * 109.47318 * 299.99141 * 17 15 10 34 34 H 1.09000 * 109.47161 * 59.99772 * 17 15 10 35 35 H 1.09005 * 109.47237 * 299.99421 * 19 18 17 36 36 H 1.08997 * 109.47436 * 60.00073 * 19 18 17 37 37 H 0.96705 * 117.00335 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0013 11 6 4.2436 -3.2672 1.2668 12 6 5.6885 -3.0272 1.7093 13 6 6.6119 -4.2440 1.7966 14 6 6.1085 -3.5722 3.0758 15 6 4.2250 -3.2093 -1.1691 16 8 4.0229 -2.6366 -2.2189 17 6 4.7279 -4.6300 -1.1704 18 16 4.9293 -5.1985 -2.8812 19 6 5.5300 -6.8980 -2.6783 20 6 5.7491 -7.5186 -4.0340 21 8 5.5227 -6.8800 -5.0345 22 8 6.1957 -8.7807 -4.1302 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6807 0.8905 25 1 3.8752 -0.6796 -0.8895 26 1 3.5625 -2.8839 2.0266 27 1 4.0767 -4.3362 1.1353 28 1 6.1282 -2.0834 1.3870 29 1 6.1900 -5.2155 1.5392 30 1 7.6595 -4.1008 1.5317 31 1 6.8250 -2.9870 3.6524 32 1 5.3555 -4.1013 3.6598 33 1 5.6880 -4.6760 -0.6565 34 1 4.0101 -5.2699 -0.6573 35 1 6.4703 -6.8877 -2.1269 36 1 4.7920 -7.4809 -2.1273 37 1 6.3205 -9.1356 -5.0210 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740307848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:21 Heat of formation + Delta-G solvation = -89.648389 kcal Electronic energy + Delta-G solvation = -20313.486847 eV Core-core repulsion = 16990.677254 eV Total energy + Delta-G solvation = -3322.809593 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.38866 -39.35530 -37.33399 -36.40844 -34.62116 -32.55862 -30.84958 -30.15055 -28.02172 -26.19930 -22.62849 -22.45748 -22.16518 -20.86519 -18.75740 -18.38625 -17.14078 -16.94751 -16.70709 -16.40688 -16.10825 -15.40391 -15.24840 -14.89042 -14.16292 -14.04715 -13.49203 -13.45108 -13.14769 -12.86569 -12.60998 -12.47710 -12.16625 -11.80737 -11.63583 -11.57490 -11.54819 -10.95613 -10.91034 -10.59538 -10.42877 -10.15836 -10.00741 -9.91898 -9.56058 -9.19664 -8.59940 -7.86457 -7.61869 -6.09824 -4.09145 1.13989 1.90680 2.38846 2.80422 3.16838 3.28807 3.34447 3.37126 3.59918 3.83231 4.38726 4.62967 4.63275 4.79399 4.83333 4.86551 4.98011 5.09644 5.12443 5.20614 5.25976 5.36222 5.53067 5.69726 5.82193 5.93188 6.02871 6.16650 6.28039 6.63233 6.89566 7.23547 7.56768 7.58036 8.09618 8.43597 8.80865 8.93577 9.49886 11.03468 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.004427 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.473757 B = 6323.800781 C = 7625.924310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.218 3.782 10 N -0.585 5.585 11 C 0.141 3.859 12 C -0.169 4.169 13 C -0.187 4.187 14 C -0.173 4.173 15 C 0.528 3.472 16 O -0.517 6.517 17 C -0.142 4.142 18 S -0.101 6.101 19 C -0.130 4.130 20 C 0.498 3.502 21 O -0.489 6.489 22 O -0.515 6.515 23 H 0.265 0.735 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.139 -15.968 2.840 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.097 3.903 10 N -0.316 5.316 11 C 0.016 3.984 12 C -0.188 4.188 13 C -0.224 4.224 14 C -0.211 4.211 15 C 0.313 3.687 16 O -0.393 6.393 17 C -0.293 4.293 18 S 0.123 5.877 19 C -0.279 4.279 20 C 0.337 3.663 21 O -0.375 6.375 22 O -0.328 6.328 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.127 0.873 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 14.534 -14.627 1.450 20.670 hybrid contribution 0.666 -0.125 0.835 1.075 sum 15.199 -14.751 2.285 21.304 Atomic orbital electron populations 1.69889 1.06202 1.27035 1.50294 1.24842 0.94751 0.98928 0.94360 0.86866 0.80149 0.83825 0.78947 1.19831 1.21052 1.19058 1.21304 0.89083 0.94894 1.51652 0.90696 1.19707 0.95758 0.77246 0.97562 1.47776 1.64067 1.15881 1.03887 1.21084 0.93290 0.96722 0.87275 1.22958 0.96803 0.98535 1.00526 1.23065 0.99717 0.96908 1.02731 1.22904 1.03580 1.03979 0.90633 1.19277 0.78756 0.86104 0.84598 1.90739 1.51164 1.66786 1.30579 1.23800 1.05926 1.00195 0.99382 1.88379 1.86542 1.06312 1.06460 1.23163 1.07482 1.01089 0.96154 1.22252 0.73432 0.79550 0.91030 1.90813 1.46199 1.62069 1.38394 1.84475 1.78910 1.29868 1.39562 0.92513 0.94957 0.94423 0.88909 0.91220 0.87320 0.88972 0.89017 0.88881 0.88564 0.87271 0.87490 0.86119 0.86034 0.72618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 8 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.22 5.19 4.23 -5.19 -0.02 5.17 16 10 N -0.58 -11.47 2.46 -175.06 -0.43 -11.90 16 11 C 0.14 2.04 5.49 -4.04 -0.02 2.02 16 12 C -0.17 -2.04 5.95 -90.62 -0.54 -2.58 16 13 C -0.19 -1.72 9.18 -26.73 -0.25 -1.96 16 14 C -0.17 -1.66 10.25 -26.73 -0.27 -1.93 16 15 C 0.53 10.52 7.69 -10.98 -0.08 10.43 16 16 O -0.52 -12.84 15.44 5.56 0.09 -12.75 16 17 C -0.14 -1.97 4.98 36.01 0.18 -1.79 16 18 S -0.10 -1.53 20.01 -107.50 -2.15 -3.69 16 19 C -0.13 -1.23 6.54 36.01 0.24 -0.99 16 20 C 0.50 5.31 8.35 36.01 0.30 5.61 16 21 O -0.49 -7.27 16.62 -18.76 -0.31 -7.58 16 22 O -0.52 -3.73 13.42 -39.23 -0.53 -4.25 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 25 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 26 H 0.09 1.43 8.07 -51.93 -0.42 1.02 16 27 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 28 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.09 0.72 7.87 -51.93 -0.41 0.31 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.11 1.20 6.84 -51.92 -0.36 0.85 16 34 H 0.11 1.25 7.40 -51.92 -0.38 0.86 16 35 H 0.12 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.41 1.30 9.10 45.56 0.41 1.71 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -37.08 332.87 -7.45 -44.53 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.33 Total: -0.06 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.91 Total: 0.64 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.34 Total: -38.64 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.75 Total: -24.58 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.15 Total: -3.69 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -37.08 -7.45 -44.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740307848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.117 kcal (2) G-P(sol) polarization free energy of solvation -37.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds