Wall clock time and date at job start Tue Mar 31 2020 02:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00130 * 2 1 4 4 H 1.48504 * 109.47019 * 270.00442 * 3 2 1 5 5 H 1.48502 * 109.46830 * 29.99742 * 3 2 1 6 6 H 1.48497 * 109.47160 * 149.99953 * 3 2 1 7 7 C 1.37881 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99768 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00011 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99884 * 269.99501 * 10 9 7 12 12 C 1.52999 * 109.47507 * 270.00494 * 11 10 9 13 13 C 1.53003 * 117.49748 * 243.62506 * 12 11 10 14 14 C 1.52992 * 117.50002 * 174.99956 * 12 11 10 15 15 C 1.34777 * 120.00258 * 90.00155 * 10 9 7 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 10 9 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 10 9 18 18 S 1.81408 * 109.46846 * 179.97438 * 17 15 10 19 19 C 1.81394 * 102.99810 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47203 * 179.97438 * 19 18 17 21 21 O 1.20832 * 119.99722 * 359.97438 * 20 19 18 22 22 O 1.34221 * 120.00219 * 179.97438 * 20 19 18 23 23 H 0.96998 * 120.00158 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47308 * 59.99627 * 9 7 2 25 25 H 1.09000 * 109.46976 * 299.99772 * 9 7 2 26 26 H 1.09005 * 109.47121 * 30.00515 * 11 10 9 27 27 H 1.08997 * 109.47160 * 150.00168 * 11 10 9 28 28 H 1.09002 * 115.54589 * 29.32423 * 12 11 10 29 29 H 1.08995 * 117.49876 * 359.97438 * 13 12 11 30 30 H 1.09002 * 117.49846 * 145.02378 * 13 12 11 31 31 H 1.09007 * 117.49671 * 214.97834 * 14 12 11 32 32 H 1.09002 * 117.50190 * 359.97438 * 14 12 11 33 33 H 1.09000 * 109.47318 * 299.99141 * 17 15 10 34 34 H 1.09000 * 109.47161 * 59.99772 * 17 15 10 35 35 H 1.09005 * 109.47237 * 299.99421 * 19 18 17 36 36 H 1.08997 * 109.47436 * 60.00073 * 19 18 17 37 37 H 0.96705 * 117.00335 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0013 11 6 4.2436 -3.2672 1.2668 12 6 5.6885 -3.0272 1.7093 13 6 6.6119 -4.2440 1.7966 14 6 6.1085 -3.5722 3.0758 15 6 4.2250 -3.2093 -1.1691 16 8 4.0229 -2.6366 -2.2189 17 6 4.7279 -4.6300 -1.1704 18 16 4.9293 -5.1985 -2.8812 19 6 5.5300 -6.8980 -2.6783 20 6 5.7491 -7.5186 -4.0340 21 8 5.5227 -6.8800 -5.0345 22 8 6.1957 -8.7807 -4.1302 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6807 0.8905 25 1 3.8752 -0.6796 -0.8895 26 1 3.5625 -2.8839 2.0266 27 1 4.0767 -4.3362 1.1353 28 1 6.1282 -2.0834 1.3870 29 1 6.1900 -5.2155 1.5392 30 1 7.6595 -4.1008 1.5317 31 1 6.8250 -2.9870 3.6524 32 1 5.3555 -4.1013 3.6598 33 1 5.6880 -4.6760 -0.6565 34 1 4.0101 -5.2699 -0.6573 35 1 6.4703 -6.8877 -2.1269 36 1 4.7920 -7.4809 -2.1273 37 1 6.3205 -9.1356 -5.0210 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740307848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:20 Heat of formation + Delta-G solvation = -116.738399 kcal Electronic energy + Delta-G solvation = -20314.661558 eV Core-core repulsion = 16990.677254 eV Total energy + Delta-G solvation = -3323.984304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19374 -40.82963 -38.38169 -37.15489 -36.19215 -34.62596 -31.97253 -31.33258 -29.60735 -27.60026 -24.42232 -23.14861 -23.08865 -21.87188 -20.18427 -19.16388 -19.09696 -18.31810 -17.94031 -17.20966 -17.20098 -16.75306 -16.61993 -15.97144 -15.85716 -15.05473 -14.71808 -14.47953 -14.34689 -14.18257 -14.00314 -13.79579 -13.55543 -13.31955 -12.91769 -12.59209 -12.58697 -12.44901 -12.23472 -12.04452 -11.78759 -11.76700 -11.24362 -11.00937 -10.90999 -10.83417 -10.65259 -9.48849 -8.75926 -8.34521 -6.39394 0.16263 1.12865 1.31402 1.36271 1.41860 1.43741 1.68204 2.10752 2.22976 2.30194 2.97382 3.00264 3.50806 3.89533 4.02663 4.04950 4.09343 4.17860 4.20903 4.21906 4.36046 4.37564 4.72340 4.74599 4.84262 4.88715 4.95053 5.11816 5.34076 5.37280 5.44817 5.55803 5.57689 6.21804 6.59020 6.62481 6.92283 7.19185 7.33272 8.82336 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.004427 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.473757 B = 6323.800781 C = 7625.924310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.238 1.238 7 C -0.536 4.536 8 H 0.031 0.969 9 C 0.228 3.772 10 N -0.590 5.590 11 C 0.138 3.862 12 C -0.194 4.194 13 C -0.166 4.166 14 C -0.163 4.163 15 C 0.514 3.486 16 O -0.579 6.579 17 C -0.111 4.111 18 S -0.200 6.200 19 C -0.106 4.106 20 C 0.502 3.498 21 O -0.542 6.542 22 O -0.500 6.500 23 H 0.268 0.732 24 H 0.051 0.949 25 H 0.016 0.984 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.147 0.853 34 H 0.136 0.864 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.891 -18.033 4.864 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.767 3.233 4 H -0.205 1.205 5 H -0.199 1.199 6 H -0.161 1.161 7 C -0.574 4.574 8 H 0.050 0.950 9 C 0.105 3.895 10 N -0.320 5.320 11 C 0.016 3.984 12 C -0.213 4.213 13 C -0.203 4.203 14 C -0.201 4.201 15 C 0.302 3.698 16 O -0.459 6.459 17 C -0.262 4.262 18 S 0.024 5.976 19 C -0.254 4.254 20 C 0.344 3.656 21 O -0.432 6.432 22 O -0.315 6.315 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.034 0.966 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.134 0.866 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.165 0.835 34 H 0.154 0.846 35 H 0.177 0.823 36 H 0.171 0.829 37 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 17.325 -16.760 3.529 24.362 hybrid contribution -0.206 0.336 0.198 0.441 sum 17.120 -16.424 3.727 24.015 Atomic orbital electron populations 1.70039 1.08152 1.28299 1.51910 1.25811 0.95636 1.03200 0.93893 0.85766 0.79971 0.78652 0.78881 1.20468 1.19881 1.16077 1.21551 0.91510 0.93314 1.51055 0.95019 1.19309 0.92710 0.80382 0.97082 1.47831 1.63436 1.14661 1.06069 1.21339 0.94880 0.97794 0.84427 1.22670 0.95599 0.99541 1.03524 1.23233 0.99581 0.96270 1.01226 1.23010 1.03579 1.03411 0.90087 1.20313 0.77685 0.88331 0.83515 1.90707 1.53733 1.68754 1.32751 1.23568 1.08138 0.95833 0.98612 1.88799 1.87636 1.12244 1.08902 1.23136 1.09855 0.96349 0.96017 1.22500 0.72243 0.79976 0.90861 1.90814 1.48697 1.63503 1.40185 1.84431 1.77836 1.27989 1.41213 0.92267 0.93160 0.96586 0.90553 0.88022 0.89342 0.86621 0.88017 0.88218 0.87544 0.83550 0.84592 0.82339 0.82876 0.70452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 2 C 0.01 0.76 5.47 84.66 0.46 1.22 16 3 Si 0.94 44.94 27.47 68.60 1.88 46.82 16 4 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 7 C -0.54 -31.56 9.94 25.60 0.25 -31.31 16 8 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 9 C 0.23 11.06 4.23 85.63 0.36 11.42 16 10 N -0.59 -23.13 2.46 -826.14 -2.03 -25.16 16 11 C 0.14 3.77 5.49 86.38 0.47 4.24 16 12 C -0.19 -4.16 5.95 -10.80 -0.06 -4.23 16 13 C -0.17 -2.25 9.18 30.60 0.28 -1.97 16 14 C -0.16 -2.51 10.25 30.59 0.31 -2.19 16 15 C 0.51 20.56 7.69 87.66 0.67 21.23 16 16 O -0.58 -30.06 15.44 -3.03 -0.05 -30.11 16 17 C -0.11 -2.82 4.98 71.24 0.35 -2.46 16 18 S -0.20 -5.90 20.01 -56.49 -1.13 -7.03 16 19 C -0.11 -1.59 6.54 71.24 0.47 -1.13 16 20 C 0.50 9.56 8.35 71.24 0.59 10.15 16 21 O -0.54 -15.99 16.62 21.94 0.36 -15.62 16 22 O -0.50 -5.59 13.42 -51.33 -0.69 -6.28 16 23 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 24 H 0.05 2.25 7.13 -2.39 -0.02 2.23 16 25 H 0.02 0.85 6.85 -2.39 -0.02 0.83 16 26 H 0.08 2.31 8.07 -2.38 -0.02 2.29 16 27 H 0.10 2.06 6.17 -2.39 -0.01 2.05 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.12 1.05 7.87 -2.39 -0.02 1.04 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.15 2.57 6.84 -2.39 -0.02 2.55 16 34 H 0.14 2.65 7.40 -2.39 -0.02 2.63 16 35 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.43 1.54 9.10 -74.05 -0.67 0.86 16 Total: -1.00 -88.74 332.87 3.19 -85.55 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.36 Total: 6.59 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 4.17 Total: 4.99 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -1.73 Total: -84.92 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -0.37 Total: -52.01 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Atomic # 16 Polarization: -5.90 SS G_CDS: -1.13 Total: -7.03 kcal Total: -88.74 3.19 -85.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740307848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.184 kcal (2) G-P(sol) polarization free energy of solvation -88.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds