Wall clock time and date at job start Tue Mar 31 2020 02:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09005 * 109.46795 * 202.70885 * 3 2 1 5 5 N 1.46499 * 109.47378 * 82.71464 * 3 2 1 6 6 S 1.65596 * 120.00156 * 94.99319 * 5 3 2 7 7 O 1.42108 * 104.27699 * 181.07256 * 6 5 3 8 8 O 1.42093 * 104.27929 * 308.93365 * 6 5 3 9 9 C 1.81397 * 104.44848 * 65.00521 * 6 5 3 10 10 C 1.53007 * 109.47100 * 179.97438 * 9 6 5 11 11 C 1.50705 * 109.46928 * 179.97438 * 10 9 6 12 12 H 1.08000 * 119.99900 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99697 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00224 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99971 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.46867 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46707 * 120.00239 * 15 13 11 18 18 H 1.48493 * 109.47187 * 240.00108 * 15 13 11 19 19 C 1.52995 * 109.47594 * 322.70743 * 3 2 1 20 20 H 1.08998 * 110.27728 * 299.36866 * 19 3 2 21 21 C 1.54947 * 110.31310 * 177.16760 * 19 3 2 22 22 C 1.55457 * 100.98961 * 204.69369 * 21 19 3 23 23 C 1.54382 * 102.18540 * 34.03935 * 22 21 19 24 24 O 1.43233 * 107.66464 * 338.74226 * 23 22 21 25 25 H 4.18738 * 15.03908 * 0.02562 * 4 2 1 26 26 H 0.97002 * 119.99781 * 275.00133 * 5 3 2 27 27 H 1.08998 * 109.47469 * 299.99702 * 9 6 5 28 28 H 1.08998 * 109.47509 * 59.99729 * 9 6 5 29 29 H 1.08998 * 109.47062 * 299.99814 * 10 9 6 30 30 H 1.09003 * 109.46801 * 60.00192 * 10 9 6 31 31 H 0.97004 * 120.00453 * 179.97438 * 14 13 11 32 32 H 1.08999 * 111.12360 * 322.55868 * 21 19 3 33 33 H 1.09001 * 111.12353 * 86.68173 * 21 19 3 34 34 H 1.08994 * 110.83103 * 275.89000 * 22 21 19 35 35 H 1.08999 * 110.92148 * 152.22878 * 22 21 19 36 36 H 1.09002 * 109.83024 * 219.18066 * 23 22 21 37 37 H 1.08996 * 109.83002 * 98.29659 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 0.9489 0.3968 5 7 3.1344 -0.1743 -1.3700 6 16 3.5276 1.1493 -2.2843 7 8 3.9280 0.6052 -3.5345 8 8 2.3901 1.9950 -2.1838 9 6 4.9463 1.8862 -1.4272 10 6 5.4086 3.1327 -2.1846 11 6 6.5869 3.7452 -1.4722 12 1 6.9682 3.2907 -0.5697 13 6 7.1781 4.8858 -1.9725 14 7 6.7135 5.4396 -3.0711 15 14 8.6391 5.6448 -1.0899 16 1 8.9656 4.8364 0.1122 17 1 9.8104 5.6694 -2.0024 18 1 8.3031 7.0314 -0.6782 19 6 3.1566 -1.1466 0.8739 20 1 2.8097 -1.0232 1.8999 21 6 4.7042 -1.2079 0.8309 22 6 4.9515 -2.7022 1.1812 23 6 3.7390 -3.3959 0.5241 24 8 2.7165 -2.4085 0.3472 25 1 -1.0500 -0.0012 0.0000 26 1 3.2275 -1.0654 -1.7417 27 1 4.6549 2.1635 -0.4141 28 1 5.7613 1.1636 -1.3858 29 1 5.7002 2.8550 -3.1975 30 1 4.5937 3.8555 -2.2262 31 1 7.1291 6.2423 -3.4230 32 1 5.0792 -0.9719 -0.1650 33 1 5.1444 -0.5497 1.5799 34 1 4.9468 -2.8531 2.2606 35 1 5.8850 -3.0554 0.7431 36 1 3.3744 -4.1941 1.1707 37 1 4.0275 -3.8066 -0.4434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773051762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:48 Heat of formation + Delta-G solvation = -71.140030 kcal Electronic energy + Delta-G solvation = -21129.656629 eV Core-core repulsion = 17807.649619 eV Total energy + Delta-G solvation = -3322.007010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.92674 -36.66472 -35.95066 -35.40921 -33.93037 -32.43647 -31.97913 -31.19975 -29.80357 -25.90328 -25.64407 -22.10767 -21.75931 -21.49348 -19.21229 -18.40889 -17.69118 -16.85516 -16.76459 -16.23829 -15.63882 -15.45463 -15.05087 -14.66867 -14.56713 -14.06753 -13.69650 -13.45258 -13.16343 -12.55390 -12.03633 -11.85697 -11.78051 -11.73626 -11.58444 -11.56742 -11.49449 -11.12595 -11.07414 -10.97317 -10.47056 -10.43182 -10.38972 -10.17236 -10.00150 -9.70462 -9.57702 -9.10205 -8.53072 -6.14765 -4.20616 0.72720 2.66670 2.92914 3.23422 3.30788 3.33417 3.36267 3.51897 4.17685 4.19526 4.28263 4.36061 4.62018 4.66340 4.73402 4.83200 4.97288 5.01357 5.13740 5.20706 5.43047 5.47160 5.54758 5.60185 5.62637 5.67736 5.86518 5.96951 5.98874 6.43437 6.77479 7.06732 7.27625 7.33482 7.73480 7.77920 8.14322 8.82970 9.44425 10.96307 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.004799 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.028987 B = 5832.969461 C = 6601.705261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.192 4.192 3 C 0.270 3.730 4 H 0.117 0.883 5 N -1.113 6.113 6 S 2.585 3.415 7 O -0.964 6.964 8 O -0.959 6.959 9 C -0.590 4.590 10 C 0.028 3.972 11 C -0.520 4.520 12 H 0.062 0.938 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.082 3.918 20 H 0.087 0.913 21 C -0.158 4.158 22 C -0.155 4.155 23 C 0.048 3.952 24 O -0.370 6.370 25 H 0.216 0.784 26 H 0.418 0.582 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 -15.878 10.471 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.194 4.194 3 C 0.162 3.838 4 H 0.135 0.865 5 N -0.869 5.869 6 S 2.683 3.317 7 O -0.954 6.954 8 O -0.949 6.949 9 C -0.724 4.724 10 C -0.011 4.011 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.528 5.528 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.023 3.977 20 H 0.105 0.895 21 C -0.196 4.196 22 C -0.192 4.192 23 C -0.029 4.029 24 O -0.289 6.289 25 H 0.233 0.767 26 H 0.253 0.747 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.290 -15.351 9.513 19.123 hybrid contribution 1.249 0.069 0.866 1.521 sum -5.041 -15.282 10.379 19.149 Atomic orbital electron populations 1.24831 0.95803 1.00642 0.98539 1.23064 0.94356 1.00401 1.01544 1.17636 0.84440 0.98816 0.82908 0.86548 1.55914 1.81520 1.24907 1.24546 1.05861 0.77353 0.73691 0.74820 1.93562 1.84685 1.77389 1.39771 1.93568 1.47763 1.67197 1.86348 1.30493 1.16770 1.12036 1.13086 1.18972 0.98254 0.88444 0.95442 1.21023 1.13972 1.10361 1.10582 0.91954 1.25066 0.97515 0.96851 0.95026 1.69962 1.41104 1.20834 1.20866 0.86421 0.82158 0.79155 0.79586 1.19658 1.20810 1.20794 1.23243 0.93683 0.84105 0.96638 0.89498 1.23438 0.94698 0.97038 1.04424 1.23131 0.99267 0.95184 1.01638 1.23154 0.87641 0.91582 1.00474 1.88475 1.39768 1.18399 1.82282 0.76674 0.74728 0.86307 0.85932 0.94793 0.94762 0.92552 0.89162 0.88933 0.90474 0.89672 0.91505 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 19.25 29.55 0.57 -1.78 16 2 C -0.19 -2.74 12.51 -37.13 -0.46 -3.20 16 3 C 0.27 3.37 2.45 -70.72 -0.17 3.20 16 4 H 0.12 1.27 7.15 -51.93 -0.37 0.90 16 5 N -1.11 -15.30 4.29 -7.31 -0.03 -15.33 16 6 S 2.59 46.46 5.38 -107.50 -0.58 45.88 16 7 O -0.96 -20.17 18.08 -57.54 -1.04 -21.21 16 8 O -0.96 -20.36 17.73 -57.54 -1.02 -21.38 16 9 C -0.59 -10.71 5.90 37.16 0.22 -10.49 16 10 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 11 C -0.52 -13.98 9.11 -34.44 -0.31 -14.29 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 15 Si 0.90 20.80 29.54 -169.99 -5.02 15.77 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.08 0.83 3.21 -25.71 -0.08 0.75 16 20 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 21 C -0.16 -1.35 6.51 -24.40 -0.16 -1.51 16 22 C -0.15 -1.10 7.03 -24.70 -0.17 -1.27 16 23 C 0.05 0.40 7.79 37.88 0.30 0.70 16 24 O -0.37 -4.16 10.20 -35.23 -0.36 -4.52 16 25 H 0.22 1.98 7.80 -54.09 -0.42 1.56 16 26 H 0.42 5.22 8.34 -34.47 -0.29 4.93 16 27 H 0.12 1.85 7.44 -51.92 -0.39 1.46 16 28 H 0.12 1.93 8.14 -51.93 -0.42 1.51 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.09 0.82 7.21 -51.93 -0.37 0.44 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 331.29 15.07 4.99 4.99 Total: -1.00 -36.02 331.29 -8.03 -44.05 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.19 Total: 3.00 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -0.52 Total: -25.83 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.71 Total: -40.76 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -2.42 Total: -47.11 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 46.46 SS G_CDS: -0.58 Total: 45.88 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.02 -8.03 -44.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773051762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.090 kcal (2) G-P(sol) polarization free energy of solvation -36.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds