Wall clock time and date at job start Tue Mar 31 2020 02:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09005 * 109.46795 * 202.70885 * 3 2 1 5 5 N 1.46499 * 109.47378 * 82.71464 * 3 2 1 6 6 S 1.65596 * 120.00156 * 94.99319 * 5 3 2 7 7 O 1.42108 * 104.27699 * 181.07256 * 6 5 3 8 8 O 1.42093 * 104.27929 * 308.93365 * 6 5 3 9 9 C 1.81397 * 104.44848 * 65.00521 * 6 5 3 10 10 C 1.53007 * 109.47100 * 179.97438 * 9 6 5 11 11 C 1.50705 * 109.46928 * 179.97438 * 10 9 6 12 12 H 1.08000 * 119.99900 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99697 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00224 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99971 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.46867 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46707 * 120.00239 * 15 13 11 18 18 H 1.48493 * 109.47187 * 240.00108 * 15 13 11 19 19 C 1.52995 * 109.47594 * 322.70743 * 3 2 1 20 20 H 1.08998 * 110.27728 * 299.36866 * 19 3 2 21 21 C 1.54947 * 110.31310 * 177.16760 * 19 3 2 22 22 C 1.55457 * 100.98961 * 204.69369 * 21 19 3 23 23 C 1.54382 * 102.18540 * 34.03935 * 22 21 19 24 24 O 1.43233 * 107.66464 * 338.74226 * 23 22 21 25 25 H 4.18738 * 15.03908 * 0.02562 * 4 2 1 26 26 H 0.97002 * 119.99781 * 275.00133 * 5 3 2 27 27 H 1.08998 * 109.47469 * 299.99702 * 9 6 5 28 28 H 1.08998 * 109.47509 * 59.99729 * 9 6 5 29 29 H 1.08998 * 109.47062 * 299.99814 * 10 9 6 30 30 H 1.09003 * 109.46801 * 60.00192 * 10 9 6 31 31 H 0.97004 * 120.00453 * 179.97438 * 14 13 11 32 32 H 1.08999 * 111.12360 * 322.55868 * 21 19 3 33 33 H 1.09001 * 111.12353 * 86.68173 * 21 19 3 34 34 H 1.08994 * 110.83103 * 275.89000 * 22 21 19 35 35 H 1.08999 * 110.92148 * 152.22878 * 22 21 19 36 36 H 1.09002 * 109.83024 * 219.18066 * 23 22 21 37 37 H 1.08996 * 109.83002 * 98.29659 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 0.9489 0.3968 5 7 3.1344 -0.1743 -1.3700 6 16 3.5276 1.1493 -2.2843 7 8 3.9280 0.6052 -3.5345 8 8 2.3901 1.9950 -2.1838 9 6 4.9463 1.8862 -1.4272 10 6 5.4086 3.1327 -2.1846 11 6 6.5869 3.7452 -1.4722 12 1 6.9682 3.2907 -0.5697 13 6 7.1781 4.8858 -1.9725 14 7 6.7135 5.4396 -3.0711 15 14 8.6391 5.6448 -1.0899 16 1 8.9656 4.8364 0.1122 17 1 9.8104 5.6694 -2.0024 18 1 8.3031 7.0314 -0.6782 19 6 3.1566 -1.1466 0.8739 20 1 2.8097 -1.0232 1.8999 21 6 4.7042 -1.2079 0.8309 22 6 4.9515 -2.7022 1.1812 23 6 3.7390 -3.3959 0.5241 24 8 2.7165 -2.4085 0.3472 25 1 -1.0500 -0.0012 0.0000 26 1 3.2275 -1.0654 -1.7417 27 1 4.6549 2.1635 -0.4141 28 1 5.7613 1.1636 -1.3858 29 1 5.7002 2.8550 -3.1975 30 1 4.5937 3.8555 -2.2262 31 1 7.1291 6.2423 -3.4230 32 1 5.0792 -0.9719 -0.1650 33 1 5.1444 -0.5497 1.5799 34 1 4.9468 -2.8531 2.2606 35 1 5.8850 -3.0554 0.7431 36 1 3.3744 -4.1941 1.1707 37 1 4.0275 -3.8066 -0.4434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773051762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:47 Heat of formation + Delta-G solvation = -98.578505 kcal Electronic energy + Delta-G solvation = -21130.846451 eV Core-core repulsion = 17807.649619 eV Total energy + Delta-G solvation = -3323.196832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.66599 -38.20832 -37.09513 -36.87991 -35.87832 -33.30205 -33.10105 -32.83450 -30.61822 -27.58660 -26.74175 -23.62533 -22.71704 -22.25899 -20.54578 -19.43469 -19.19837 -18.38814 -17.74755 -17.31489 -17.02905 -16.62553 -16.48570 -16.14012 -15.71337 -15.17851 -14.75467 -14.53782 -14.44544 -13.97455 -13.70733 -13.22883 -13.13012 -13.06661 -12.92866 -12.75932 -12.65907 -12.55811 -12.23803 -12.16617 -12.08493 -11.75403 -11.64789 -11.44380 -11.29198 -11.08428 -10.69144 -10.63072 -10.39221 -8.23335 -6.37022 -0.74471 1.44106 1.44254 1.50397 1.57464 1.92792 2.17964 2.40477 2.73434 2.87342 3.11036 3.23440 3.36860 3.60847 3.84054 3.95896 4.02605 4.08568 4.17696 4.28881 4.32666 4.46861 4.69608 4.80401 4.89393 5.00017 5.05266 5.08419 5.12159 5.29376 5.30457 5.34410 5.71547 5.99359 6.08192 6.09986 6.73196 6.77582 7.33504 8.89332 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.004799 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.028987 B = 5832.969461 C = 6601.705261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.230 4.230 3 C 0.257 3.743 4 H 0.131 0.869 5 N -1.095 6.095 6 S 2.607 3.393 7 O -0.998 6.998 8 O -0.995 6.995 9 C -0.581 4.581 10 C 0.019 3.981 11 C -0.533 4.533 12 H 0.082 0.918 13 C -0.005 4.005 14 N -0.937 5.937 15 Si 0.973 3.027 16 H -0.252 1.252 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.086 3.914 20 H 0.103 0.897 21 C -0.163 4.163 22 C -0.147 4.147 23 C 0.040 3.960 24 O -0.395 6.395 25 H 0.245 0.755 26 H 0.425 0.575 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.005 0.995 30 H 0.006 0.994 31 H 0.266 0.734 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 -17.023 12.975 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.231 4.231 3 C 0.150 3.850 4 H 0.149 0.851 5 N -0.855 5.855 6 S 2.705 3.295 7 O -0.989 6.989 8 O -0.985 6.985 9 C -0.714 4.714 10 C -0.020 4.020 11 C -0.572 4.572 12 H 0.100 0.900 13 C -0.203 4.203 14 N -0.577 5.577 15 Si 0.797 3.203 16 H -0.175 1.175 17 H -0.207 1.207 18 H -0.207 1.207 19 C 0.027 3.973 20 H 0.121 0.879 21 C -0.200 4.200 22 C -0.185 4.185 23 C -0.036 4.036 24 O -0.315 6.315 25 H 0.261 0.739 26 H 0.262 0.738 27 H 0.168 0.832 28 H 0.170 0.830 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.270 -16.520 12.025 21.102 hybrid contribution 0.827 0.355 0.093 0.905 sum -4.443 -16.165 12.117 20.685 Atomic orbital electron populations 1.25730 0.96949 0.99875 0.97348 1.23702 0.95518 1.01279 1.02651 1.18069 0.83974 1.00866 0.82073 0.85129 1.55401 1.81122 1.23784 1.25151 1.04917 0.76627 0.73675 0.74257 1.93507 1.85047 1.78069 1.42228 1.93520 1.49315 1.68814 1.86830 1.30317 1.17713 1.09738 1.13603 1.18839 0.97289 0.90792 0.95048 1.21556 1.14172 1.10414 1.11065 0.89991 1.26114 1.00775 0.97658 0.95752 1.70116 1.43056 1.21581 1.22909 0.85272 0.77997 0.78190 0.78826 1.17489 1.20699 1.20675 1.23287 0.94683 0.82870 0.96444 0.87931 1.23517 0.93436 0.98418 1.04671 1.23127 0.98971 0.93914 1.02467 1.23326 0.87808 0.91426 1.01028 1.88449 1.41139 1.19212 1.82651 0.73880 0.73806 0.83206 0.82988 0.97661 0.97599 0.92518 0.89871 0.87232 0.89083 0.88725 0.90495 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.51 19.25 74.32 1.43 -3.08 16 2 C -0.23 -6.31 12.51 31.12 0.39 -5.92 16 3 C 0.26 6.01 2.45 43.18 0.11 6.12 16 4 H 0.13 2.59 7.15 -2.38 -0.02 2.57 16 5 N -1.10 -28.98 4.29 -177.03 -0.76 -29.73 16 6 S 2.61 93.58 5.38 -56.49 -0.30 93.28 16 7 O -1.00 -42.42 18.08 -127.65 -2.31 -44.73 16 8 O -1.00 -42.85 17.73 -127.65 -2.26 -45.11 16 9 C -0.58 -20.33 5.90 71.98 0.42 -19.91 16 10 C 0.02 0.98 4.98 29.85 0.15 1.13 16 11 C -0.53 -28.31 9.11 25.60 0.23 -28.08 16 12 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 13 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 14 N -0.94 -56.35 13.29 21.45 0.28 -56.06 16 15 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 16 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 19 C 0.09 1.53 3.21 31.26 0.10 1.63 16 20 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 21 C -0.16 -2.28 6.51 32.11 0.21 -2.07 16 22 C -0.15 -1.64 7.03 31.91 0.22 -1.42 16 23 C 0.04 0.59 7.79 72.45 0.56 1.15 16 24 O -0.39 -8.20 10.20 -148.98 -1.52 -9.72 16 25 H 0.24 4.05 7.80 -4.42 -0.03 4.01 16 26 H 0.43 10.24 8.34 -96.75 -0.81 9.43 16 27 H 0.15 4.29 7.44 -2.39 -0.02 4.27 16 28 H 0.15 4.42 8.14 -2.39 -0.02 4.40 16 29 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 31 H 0.27 14.98 8.31 -92.70 -0.77 14.20 16 32 H 0.08 1.28 7.21 -2.39 -0.02 1.26 16 33 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -78.99 331.29 -0.29 -79.28 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.26 Total: 18.93 kcal Atomic # 6 Polarization: -54.53 SS G_CDS: 4.29 Total: -50.24 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -0.47 Total: -85.80 kcal Atomic # 8 Polarization: -93.47 SS G_CDS: -6.09 Total: -99.56 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 93.58 SS G_CDS: -0.30 Total: 93.28 kcal Total: -78.99 -0.29 -79.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773051762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.295 kcal (2) G-P(sol) polarization free energy of solvation -78.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds