Wall clock time and date at job start Tue Mar 31 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34258 * 125.75178 * 2 1 4 4 C 1.38042 * 107.41914 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.41775 * 179.97438 * 4 3 2 6 6 O 1.21603 * 120.00000 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99743 * 179.97438 * 5 4 3 8 8 S 1.65602 * 119.99511 * 179.72170 * 7 5 4 9 9 O 1.42109 * 104.27511 * 181.34842 * 8 7 5 10 10 O 1.42098 * 104.28120 * 309.20840 * 8 7 5 11 11 C 1.81394 * 104.44973 * 65.28308 * 8 7 5 12 12 C 1.53003 * 109.47387 * 179.97438 * 11 8 7 13 13 C 1.50707 * 109.47138 * 179.97438 * 12 11 8 14 14 H 1.08001 * 119.99608 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99869 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99869 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00166 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47285 * 89.99841 * 17 15 13 19 19 H 1.48504 * 109.47506 * 210.00094 * 17 15 13 20 20 H 1.48502 * 109.47051 * 330.00121 * 17 15 13 21 21 C 1.41291 * 107.16396 * 0.23821 * 4 3 2 22 22 N 1.30442 * 108.02749 * 359.59410 * 21 4 3 23 23 H 1.08998 * 109.46812 * 90.00152 * 1 2 3 24 24 H 1.08996 * 109.46938 * 210.00217 * 1 2 3 25 25 H 1.08997 * 109.47409 * 330.00651 * 1 2 3 26 26 H 1.07999 * 126.29325 * 359.97344 * 3 2 1 27 27 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 28 28 H 1.09009 * 109.47044 * 299.99503 * 11 8 7 29 29 H 1.09001 * 109.47747 * 59.99183 * 11 8 7 30 30 H 1.08994 * 109.46789 * 299.99279 * 12 11 8 31 31 H 1.08993 * 109.47045 * 59.99537 * 12 11 8 32 32 H 0.97007 * 119.99442 * 180.02562 * 16 15 13 33 33 H 1.08008 * 125.98679 * 179.74239 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5599 0.6554 -0.0006 5 6 4.7638 1.5062 -0.0013 6 8 4.6525 2.7172 -0.0019 7 7 5.9877 0.9419 -0.0013 8 16 7.3401 1.8977 -0.0091 9 8 8.4208 0.9755 -0.0395 10 8 7.1215 2.8056 -1.0802 11 6 7.2894 2.7666 1.5823 12 6 8.5024 3.6922 1.6970 13 6 8.4599 4.4145 3.0190 14 1 7.6486 4.2320 3.7082 15 6 9.4566 5.3083 3.3485 16 7 10.4447 5.5301 2.5093 17 14 9.4044 6.2031 4.9873 18 1 10.1249 5.4041 6.0108 19 1 10.0551 7.5307 4.8475 20 1 7.9916 6.3861 5.4066 21 6 3.5311 -0.7572 -0.0066 22 7 2.2827 -1.1355 -0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.9166 2.1170 -0.0004 27 1 6.0765 -0.0240 -0.0012 28 1 6.3748 3.3563 1.6454 29 1 7.3096 2.0396 2.3942 30 1 9.4167 3.1022 1.6342 31 1 8.4825 4.4192 0.8852 32 1 11.1462 6.1587 2.7414 33 1 4.3919 -1.4095 -0.0124 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776122306.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:40 Heat of formation + Delta-G solvation = -36.127539 kcal Electronic energy + Delta-G solvation = -20164.948210 eV Core-core repulsion = 16740.919112 eV Total energy + Delta-G solvation = -3424.029098 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73004 -39.46485 -36.62863 -35.54903 -34.49597 -33.85785 -33.60018 -31.14243 -30.69612 -27.60998 -25.58519 -23.80140 -21.72497 -21.43334 -20.80161 -19.23369 -18.52926 -17.51487 -16.50476 -16.34392 -16.09947 -15.59916 -15.08812 -14.95492 -14.65021 -14.59237 -14.44537 -13.41515 -13.34687 -13.10757 -13.05907 -12.51168 -12.30356 -11.75536 -11.66312 -11.56094 -11.44129 -11.05208 -10.95385 -10.77428 -10.38759 -10.32068 -10.17898 -9.99504 -9.66966 -9.15135 -9.07943 -8.46636 -6.08979 -4.14125 0.57006 1.13400 1.76590 1.95500 2.81592 3.08523 3.29192 3.35217 3.38645 3.92778 4.14934 4.38563 4.40402 4.48600 4.63759 4.66547 4.74188 4.92488 4.97480 5.08405 5.26385 5.34373 5.66880 5.79356 5.99008 6.37986 6.52099 6.74836 7.13584 7.33106 7.39853 7.62495 7.84377 8.20699 8.88907 9.50182 11.02174 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.003891 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.444004 B = 7193.569157 C = 7935.045700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.364 5.364 3 C 0.139 3.861 4 C -0.299 4.299 5 C 0.616 3.384 6 O -0.500 6.500 7 N -1.055 6.055 8 S 2.569 3.431 9 O -0.955 6.955 10 O -0.938 6.938 11 C -0.576 4.576 12 C 0.029 3.971 13 C -0.518 4.518 14 H 0.062 0.938 15 C 0.057 3.943 16 N -0.891 5.891 17 Si 0.901 3.099 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.087 3.913 22 N -0.297 5.297 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.194 0.806 27 H 0.426 0.574 28 H 0.132 0.868 29 H 0.121 0.879 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.265 0.735 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.459 -13.127 -4.143 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.142 5.142 3 C -0.014 4.014 4 C -0.316 4.316 5 C 0.404 3.596 6 O -0.374 6.374 7 N -0.815 5.815 8 S 2.669 3.331 9 O -0.946 6.946 10 O -0.928 6.928 11 C -0.710 4.710 12 C -0.010 4.010 13 C -0.558 4.558 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.728 3.272 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.101 4.101 22 N -0.116 5.116 23 H 0.100 0.900 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.211 0.789 27 H 0.261 0.739 28 H 0.150 0.850 29 H 0.140 0.860 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -19.777 -13.139 -4.932 24.250 hybrid contribution 0.301 0.687 1.411 1.598 sum -19.476 -12.452 -3.521 23.383 Atomic orbital electron populations 1.22041 0.73164 1.05208 1.04099 1.48481 1.07437 1.03849 1.54452 1.23102 0.89953 0.94042 0.94269 1.20174 0.93175 0.93690 1.24564 1.17075 0.82203 0.87036 0.73255 1.90980 1.86326 1.13259 1.46814 1.55228 1.22263 1.22836 1.81198 1.06598 0.72260 0.74765 0.79434 1.93589 1.50297 1.62512 1.88165 1.93593 1.83442 1.64252 1.51524 1.30339 1.11564 1.12441 1.16681 1.18994 0.88638 0.93358 1.00041 1.20990 1.09098 1.24141 1.01540 0.91962 1.25063 0.95275 0.96676 0.97486 1.69962 1.11757 1.35420 1.35749 0.86449 0.78288 0.79041 0.83382 1.20495 1.21015 1.19740 1.24138 0.95534 0.93746 0.96648 1.77208 1.01819 1.07776 1.24816 0.90022 0.88724 0.88766 0.78893 0.73945 0.85001 0.86032 0.94746 0.94551 0.92543 0.78902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.35 11.44 59.85 0.68 1.03 16 2 N -0.36 -2.99 3.98 -67.60 -0.27 -3.26 16 3 C 0.14 1.27 11.30 -16.56 -0.19 1.08 16 4 C -0.30 -3.32 6.13 -105.07 -0.64 -3.97 16 5 C 0.62 8.76 7.55 -12.52 -0.09 8.66 16 6 O -0.50 -8.90 15.00 -11.94 -0.18 -9.08 16 7 N -1.06 -14.04 5.60 30.43 0.17 -13.87 16 8 S 2.57 47.50 5.11 -107.50 -0.55 46.95 16 9 O -0.96 -19.05 18.08 -57.54 -1.04 -20.10 16 10 O -0.94 -20.86 17.03 -64.81 -1.10 -21.96 16 11 C -0.58 -11.58 5.83 37.16 0.22 -11.36 16 12 C 0.03 0.75 4.98 -27.88 -0.14 0.62 16 13 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 14 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 17 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.09 0.82 11.50 -16.98 -0.20 0.62 16 22 N -0.30 -2.99 12.50 30.86 0.39 -2.61 16 23 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 26 H 0.19 1.31 8.06 -52.49 -0.42 0.88 16 27 H 0.43 3.85 7.74 -34.47 -0.27 3.58 16 28 H 0.13 2.61 7.20 -51.92 -0.37 2.23 16 29 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 30 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.19 1.12 7.50 -52.48 -0.39 0.72 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -39.43 310.14 -6.50 -45.93 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.53 Total: -0.43 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.77 Total: -16.67 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 1.02 Total: -45.76 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -2.32 Total: -51.13 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 47.50 SS G_CDS: -0.55 Total: 46.95 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -39.43 -6.50 -45.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122306.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.798 kcal (2) G-P(sol) polarization free energy of solvation -39.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds