Wall clock time and date at job start Tue Mar 31 2020 02:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34258 * 125.75178 * 2 1 4 4 C 1.38042 * 107.41914 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.41775 * 179.97438 * 4 3 2 6 6 O 1.21603 * 120.00000 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99743 * 179.97438 * 5 4 3 8 8 S 1.65602 * 119.99511 * 179.72170 * 7 5 4 9 9 O 1.42109 * 104.27511 * 181.34842 * 8 7 5 10 10 O 1.42098 * 104.28120 * 309.20840 * 8 7 5 11 11 C 1.81394 * 104.44973 * 65.28308 * 8 7 5 12 12 C 1.53003 * 109.47387 * 179.97438 * 11 8 7 13 13 C 1.50707 * 109.47138 * 179.97438 * 12 11 8 14 14 H 1.08001 * 119.99608 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99869 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99869 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00166 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47285 * 89.99841 * 17 15 13 19 19 H 1.48504 * 109.47506 * 210.00094 * 17 15 13 20 20 H 1.48502 * 109.47051 * 330.00121 * 17 15 13 21 21 C 1.41291 * 107.16396 * 0.23821 * 4 3 2 22 22 N 1.30442 * 108.02749 * 359.59410 * 21 4 3 23 23 H 1.08998 * 109.46812 * 90.00152 * 1 2 3 24 24 H 1.08996 * 109.46938 * 210.00217 * 1 2 3 25 25 H 1.08997 * 109.47409 * 330.00651 * 1 2 3 26 26 H 1.07999 * 126.29325 * 359.97344 * 3 2 1 27 27 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 28 28 H 1.09009 * 109.47044 * 299.99503 * 11 8 7 29 29 H 1.09001 * 109.47747 * 59.99183 * 11 8 7 30 30 H 1.08994 * 109.46789 * 299.99279 * 12 11 8 31 31 H 1.08993 * 109.47045 * 59.99537 * 12 11 8 32 32 H 0.97007 * 119.99442 * 180.02562 * 16 15 13 33 33 H 1.08008 * 125.98679 * 179.74239 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5599 0.6554 -0.0006 5 6 4.7638 1.5062 -0.0013 6 8 4.6525 2.7172 -0.0019 7 7 5.9877 0.9419 -0.0013 8 16 7.3401 1.8977 -0.0091 9 8 8.4208 0.9755 -0.0395 10 8 7.1215 2.8056 -1.0802 11 6 7.2894 2.7666 1.5823 12 6 8.5024 3.6922 1.6970 13 6 8.4599 4.4145 3.0190 14 1 7.6486 4.2320 3.7082 15 6 9.4566 5.3083 3.3485 16 7 10.4447 5.5301 2.5093 17 14 9.4044 6.2031 4.9873 18 1 10.1249 5.4041 6.0108 19 1 10.0551 7.5307 4.8475 20 1 7.9916 6.3861 5.4066 21 6 3.5311 -0.7572 -0.0066 22 7 2.2827 -1.1355 -0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.9166 2.1170 -0.0004 27 1 6.0765 -0.0240 -0.0012 28 1 6.3748 3.3563 1.6454 29 1 7.3096 2.0396 2.3942 30 1 9.4167 3.1022 1.6342 31 1 8.4825 4.4192 0.8852 32 1 11.1462 6.1587 2.7414 33 1 4.3919 -1.4095 -0.0124 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776122306.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:39 Heat of formation + Delta-G solvation = -67.954519 kcal Electronic energy + Delta-G solvation = -20166.328331 eV Core-core repulsion = 16740.919112 eV Total energy + Delta-G solvation = -3425.409219 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.46220 -40.59785 -38.24214 -37.18830 -35.93561 -35.61451 -34.24229 -33.15112 -31.45438 -28.15519 -27.60752 -24.75884 -23.58422 -22.20804 -21.72492 -20.58941 -19.56589 -19.08311 -18.29567 -17.33863 -17.25751 -16.65736 -16.53714 -16.49598 -15.87658 -15.81890 -15.31338 -15.15411 -14.47193 -13.98761 -13.78513 -13.69972 -13.55167 -13.46734 -13.33219 -13.21964 -12.92806 -12.82000 -12.29948 -12.25422 -12.20131 -11.97634 -11.71197 -11.31807 -11.03764 -10.63550 -10.63390 -9.84135 -8.25342 -6.39248 -0.96100 0.31194 0.99880 1.32707 1.41634 1.44033 1.55176 1.57980 2.10406 2.38987 2.62902 3.07113 3.08535 3.33333 3.69869 3.77574 3.97735 4.07103 4.09635 4.15844 4.44514 4.53108 4.64832 4.72969 4.73346 5.25648 5.26852 5.32126 5.68572 5.74565 5.81899 6.06221 6.43342 6.56823 6.73364 7.30512 8.87130 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.003891 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.444004 B = 7193.569157 C = 7935.045700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.359 5.359 3 C 0.147 3.853 4 C -0.325 4.325 5 C 0.617 3.383 6 O -0.541 6.541 7 N -1.035 6.035 8 S 2.604 3.396 9 O -0.970 6.970 10 O -0.978 6.978 11 C -0.578 4.578 12 C 0.022 3.978 13 C -0.540 4.540 14 H 0.074 0.926 15 C -0.003 4.003 16 N -0.933 5.933 17 Si 0.976 3.024 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.260 1.260 21 C 0.093 3.907 22 N -0.320 5.320 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.214 0.786 27 H 0.447 0.553 28 H 0.135 0.865 29 H 0.151 0.849 30 H 0.016 0.984 31 H 0.006 0.994 32 H 0.268 0.732 33 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.603 -14.225 -2.967 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.136 5.136 3 C -0.008 4.008 4 C -0.342 4.342 5 C 0.408 3.592 6 O -0.418 6.418 7 N -0.800 5.800 8 S 2.703 3.297 9 O -0.960 6.960 10 O -0.968 6.968 11 C -0.711 4.711 12 C -0.017 4.017 13 C -0.579 4.579 14 H 0.092 0.908 15 C -0.202 4.202 16 N -0.573 5.573 17 Si 0.799 3.201 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.184 1.184 21 C -0.095 4.095 22 N -0.140 5.140 23 H 0.114 0.886 24 H 0.119 0.881 25 H 0.138 0.862 26 H 0.231 0.769 27 H 0.287 0.713 28 H 0.154 0.846 29 H 0.169 0.831 30 H 0.034 0.966 31 H 0.024 0.976 32 H 0.077 0.923 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -21.941 -14.292 -3.745 26.452 hybrid contribution 0.825 0.941 0.986 1.593 sum -21.116 -13.351 -2.760 25.135 Atomic orbital electron populations 1.22454 0.70615 1.06835 1.05545 1.48864 1.08838 1.03076 1.52798 1.23468 0.89595 0.95158 0.92543 1.20003 0.92454 0.94179 1.27595 1.17516 0.82778 0.86838 0.72041 1.90962 1.86630 1.15146 1.49015 1.54637 1.20778 1.23718 1.80906 1.05251 0.72493 0.74123 0.77835 1.93563 1.51877 1.62590 1.87983 1.93543 1.84419 1.66036 1.52768 1.30236 1.08802 1.12495 1.19560 1.18842 0.90610 0.93658 0.98621 1.21486 1.09484 1.24467 1.02482 0.90780 1.26116 0.94760 0.97610 1.01683 1.70104 1.12691 1.36347 1.38109 0.85285 0.78936 0.77543 0.78316 1.19290 1.20756 1.18415 1.24599 0.96312 0.93273 0.95332 1.77188 1.02257 1.08914 1.25632 0.88630 0.88097 0.86240 0.76910 0.71340 0.84644 0.83072 0.96588 0.97582 0.92316 0.76125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 11.44 127.77 1.46 1.83 16 2 N -0.36 -4.98 3.98 -367.78 -1.46 -6.44 16 3 C 0.15 2.36 11.30 84.28 0.95 3.31 16 4 C -0.33 -6.63 6.13 -20.15 -0.12 -6.75 16 5 C 0.62 16.89 7.55 86.66 0.65 17.55 16 6 O -0.54 -19.15 15.00 12.42 0.19 -18.96 16 7 N -1.03 -26.27 5.60 -175.89 -0.98 -27.25 16 8 S 2.60 96.44 5.11 -56.49 -0.29 96.15 16 9 O -0.97 -38.43 18.08 -127.65 -2.31 -40.74 16 10 O -0.98 -44.44 17.03 -120.69 -2.05 -46.49 16 11 C -0.58 -23.33 5.83 71.98 0.42 -22.91 16 12 C 0.02 1.17 4.98 29.85 0.15 1.32 16 13 C -0.54 -30.73 9.11 25.60 0.23 -30.49 16 14 H 0.07 3.92 7.74 -2.91 -0.02 3.89 16 15 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 16 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 17 Si 0.98 43.94 29.54 68.60 2.03 45.97 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 21 C 0.09 1.51 11.50 85.65 0.99 2.50 16 22 N -0.32 -5.72 12.50 -56.27 -0.70 -6.42 16 23 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 24 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H 0.21 2.39 8.06 -2.91 -0.02 2.37 16 27 H 0.45 7.15 7.74 -96.74 -0.75 6.40 16 28 H 0.14 5.38 7.20 -2.39 -0.02 5.36 16 29 H 0.15 5.07 8.14 -2.39 -0.02 5.05 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 33 H 0.22 1.91 7.50 -2.91 -0.02 1.88 16 Total: -1.00 -86.74 310.14 0.29 -86.45 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.40 Total: 8.22 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 5.19 Total: -33.38 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -2.87 Total: -97.22 kcal Atomic # 8 Polarization: -102.01 SS G_CDS: -4.18 Total: -106.19 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 96.44 SS G_CDS: -0.29 Total: 96.15 kcal Total: -86.74 0.29 -86.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122306.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.493 kcal (2) G-P(sol) polarization free energy of solvation -86.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds