Wall clock time and date at job start Tue Mar 31 2020 03:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46765 * 124.34977 * 2 1 4 4 C 1.54486 * 105.47318 * 197.02004 * 3 2 1 5 5 H 1.08999 * 110.96975 * 92.70331 * 4 3 2 6 6 C 1.50698 * 110.96779 * 216.46254 * 4 3 2 7 7 O 1.20829 * 119.99968 * 0.02562 * 6 4 3 8 8 O 1.34222 * 119.99845 * 179.97438 * 6 4 3 9 9 C 1.45203 * 116.99955 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.47018 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46985 * 179.97438 * 10 9 8 12 12 S 1.81001 * 109.46996 * 180.02562 * 11 10 9 13 13 C 1.76199 * 99.99646 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00323 * 0.02562 * 13 12 11 15 15 C 1.38806 * 119.99808 * 179.97438 * 13 12 11 16 16 N 1.31634 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00137 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46726 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.47018 * 120.00104 * 17 15 13 20 20 H 1.48496 * 109.46948 * 240.00157 * 17 15 13 21 21 C 1.54629 * 101.76286 * 334.58239 * 4 3 2 22 22 C 1.34420 * 124.34793 * 179.70699 * 2 1 3 23 23 O 1.21272 * 124.94435 * 359.56674 * 22 2 1 24 24 H 1.09002 * 109.47391 * 89.99821 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99878 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.00005 * 1 2 3 27 27 H 1.09003 * 110.24413 * 316.02003 * 3 2 1 28 28 H 1.08998 * 110.24763 * 77.93408 * 3 2 1 29 29 H 1.08998 * 109.47272 * 299.99984 * 9 8 6 30 30 H 1.08997 * 109.47257 * 60.00707 * 9 8 6 31 31 H 1.08994 * 109.47662 * 300.00093 * 10 9 8 32 32 H 1.09001 * 109.46723 * 60.00704 * 10 9 8 33 33 H 1.09007 * 109.47263 * 300.00382 * 11 10 9 34 34 H 1.09002 * 109.46918 * 60.00224 * 11 10 9 35 35 H 0.96997 * 119.99886 * 180.02562 * 16 15 13 36 36 H 1.09007 * 110.48144 * 143.47624 * 21 4 3 37 37 H 1.08991 * 110.48662 * 265.98718 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7487 -0.4358 5 1 3.8269 0.8448 -1.5142 6 6 4.7717 1.5123 0.3001 7 8 4.4645 2.3572 1.1074 8 8 6.0665 1.2532 0.0595 9 6 7.0432 2.0268 0.8052 10 6 8.4536 1.5939 0.3998 11 6 9.4828 2.4095 1.1851 12 16 11.1514 1.8979 0.7051 13 6 12.1058 2.9664 1.7307 14 1 11.6122 3.6620 2.3932 15 6 13.4922 2.9134 1.6880 16 7 14.0939 2.0653 0.8809 17 14 14.5042 4.0457 2.7758 18 1 13.5955 4.8970 3.5850 19 1 15.3557 3.2322 3.6803 20 1 15.3657 4.9076 1.9272 21 6 3.6898 -0.7378 -0.0102 22 6 2.2234 -1.1098 0.0057 23 8 1.7946 -2.2441 0.0190 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5139 27 1 1.8983 1.9383 -0.7102 28 1 2.3295 1.6438 1.0000 29 1 6.9110 3.0864 0.5866 30 1 6.9039 1.8558 1.8726 31 1 8.5856 0.5344 0.6188 32 1 8.5933 1.7646 -0.6676 33 1 9.3508 3.4690 0.9658 34 1 9.3432 2.2393 2.2527 35 1 15.0627 2.0280 0.8513 36 1 4.2326 -1.3459 -0.7340 37 1 4.1216 -0.8533 0.9838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805393388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:29 Heat of formation + Delta-G solvation = -152.663279 kcal Electronic energy + Delta-G solvation = -19489.101863 eV Core-core repulsion = 16163.559739 eV Total energy + Delta-G solvation = -3325.542123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.12960 -40.92534 -38.14023 -37.30400 -34.94418 -34.58388 -33.99571 -29.08283 -28.44674 -27.87025 -27.22343 -24.58678 -22.70551 -21.62482 -20.64973 -19.58825 -18.96225 -18.05795 -17.99784 -17.45713 -16.89631 -16.76386 -16.36929 -16.01651 -15.89488 -14.98415 -14.84729 -14.70123 -14.53290 -14.14240 -13.88894 -13.76745 -13.41773 -13.22784 -13.14655 -12.96348 -12.65304 -12.59035 -12.52041 -12.37045 -12.32595 -11.74707 -11.49790 -11.44147 -11.15654 -11.02212 -10.34305 -9.82047 -8.67144 -8.37972 -6.14014 1.02966 1.24798 1.38613 1.38977 1.41120 1.51589 1.78533 2.03257 2.27460 2.96737 3.04923 3.22489 3.30552 3.59477 3.73737 3.88216 3.99650 4.02787 4.18311 4.33003 4.35585 4.39991 4.53651 4.56483 4.63340 4.70611 4.75749 4.83542 4.86612 5.04746 5.14630 5.40100 5.40830 5.43767 5.94256 6.18353 6.59752 6.99540 7.04916 8.71474 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.050205 B = 0.002276 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.578512 B =12300.190499 C =12629.796554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.621 5.621 3 C 0.115 3.885 4 C -0.086 4.086 5 H 0.162 0.838 6 C 0.477 3.523 7 O -0.528 6.528 8 O -0.350 6.350 9 C 0.080 3.920 10 C -0.088 4.088 11 C -0.092 4.092 12 S -0.187 6.187 13 C -0.538 4.538 14 H 0.074 0.926 15 C 0.015 3.985 16 N -0.907 5.907 17 Si 0.994 3.006 18 H -0.263 1.263 19 H -0.273 1.273 20 H -0.272 1.272 21 C -0.139 4.139 22 C 0.512 3.488 23 O -0.574 6.574 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.272 0.728 36 H 0.133 0.867 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.503 -0.055 -3.465 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.354 5.354 3 C -0.007 4.007 4 C -0.105 4.105 5 H 0.179 0.821 6 C 0.321 3.679 7 O -0.417 6.417 8 O -0.266 6.266 9 C 0.005 3.995 10 C -0.126 4.126 11 C -0.241 4.241 12 S 0.041 5.959 13 C -0.686 4.686 14 H 0.092 0.908 15 C -0.190 4.190 16 N -0.543 5.543 17 Si 0.816 3.184 18 H -0.187 1.187 19 H -0.198 1.198 20 H -0.197 1.197 21 C -0.179 4.179 22 C 0.301 3.699 23 O -0.454 6.454 24 H 0.090 0.910 25 H 0.116 0.884 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.151 0.849 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -25.370 -1.214 -4.019 25.715 hybrid contribution 0.553 1.491 1.621 2.271 sum -24.818 0.277 -2.398 24.935 Atomic orbital electron populations 1.21761 0.76306 1.03921 1.03172 1.48350 1.07738 1.06922 1.72405 1.22160 0.87073 0.86927 1.04577 1.21945 0.90764 0.93923 1.03878 0.82050 1.23487 0.83348 0.80945 0.80156 1.90695 1.83196 1.33413 1.34361 1.86467 1.16295 1.61023 1.62856 1.23061 0.85469 0.95260 0.95696 1.21115 0.89769 1.00650 1.01063 1.23076 0.96490 1.02232 1.02274 1.84649 0.98430 1.54570 1.58217 1.23084 0.94060 1.24231 1.27237 0.90755 1.26067 0.98204 0.97531 0.97245 1.70151 1.10324 1.36332 1.37491 0.84963 0.77782 0.77793 0.77820 1.18656 1.19792 1.19710 1.22320 0.94109 0.94997 1.06455 1.21120 0.89964 0.84189 0.74673 1.90722 1.79304 1.22837 1.52574 0.90977 0.88393 0.91858 0.86220 0.89676 0.90370 0.90730 0.90288 0.90100 0.91240 0.91401 0.91940 0.84909 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.97 127.77 1.40 2.25 16 2 N -0.62 -8.36 3.33 -842.87 -2.81 -11.17 16 3 C 0.11 1.13 6.71 86.83 0.58 1.71 16 4 C -0.09 -0.93 3.66 -10.48 -0.04 -0.97 16 5 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 6 C 0.48 8.64 7.19 71.24 0.51 9.16 16 7 O -0.53 -12.35 15.26 21.95 0.33 -12.02 16 8 O -0.35 -7.36 10.22 -51.34 -0.52 -7.88 16 9 C 0.08 1.91 5.47 71.98 0.39 2.31 16 10 C -0.09 -2.53 5.60 30.60 0.17 -2.36 16 11 C -0.09 -3.43 5.67 71.98 0.41 -3.03 16 12 S -0.19 -9.62 21.44 -56.49 -1.21 -10.83 16 13 C -0.54 -30.39 9.50 67.96 0.65 -29.74 16 14 H 0.07 4.04 7.80 -2.91 -0.02 4.02 16 15 C 0.01 0.81 5.49 84.86 0.47 1.28 16 16 N -0.91 -53.88 13.22 21.65 0.29 -53.59 16 17 Si 0.99 43.26 29.55 68.60 2.03 45.29 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 C -0.14 -1.87 6.41 30.59 0.20 -1.67 16 22 C 0.51 9.73 8.02 87.90 0.71 10.43 16 23 O -0.57 -16.08 17.58 -3.01 -0.05 -16.14 16 24 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.06 0.80 7.92 -2.38 -0.02 0.78 16 27 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.09 1.06 6.97 -2.39 -0.02 1.05 16 29 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 30 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.11 1.55 7.89 -2.39 -0.02 1.53 16 Total: -1.00 -74.76 335.04 4.55 -70.21 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.06 Total: 6.75 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 5.44 Total: -10.63 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -2.52 Total: -64.76 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.24 Total: -36.03 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -9.62 SS G_CDS: -1.21 Total: -10.83 kcal Total: -74.76 4.55 -70.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805393388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.456 kcal (2) G-P(sol) polarization free energy of solvation -74.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds