Wall clock time and date at job start Tue Mar 31 2020 03:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34783 * 119.99487 * 2 1 4 4 O 1.21279 * 120.00123 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99670 * 179.97438 * 3 2 1 6 6 C 1.50701 * 115.55091 * 325.58317 * 5 3 2 7 7 O 1.20825 * 120.00071 * 214.42013 * 6 5 3 8 8 O 1.34233 * 120.00152 * 34.41557 * 6 5 3 9 9 C 1.45194 * 116.99930 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46979 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 S 1.81000 * 109.47293 * 179.97438 * 11 10 9 13 13 C 1.76202 * 100.00020 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00485 * 359.97438 * 13 12 11 15 15 C 1.38806 * 119.99444 * 179.97438 * 13 12 11 16 16 N 1.31629 * 120.00213 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99465 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47494 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46982 * 120.00256 * 17 15 13 20 20 H 1.48501 * 109.47125 * 240.00112 * 17 15 13 21 21 C 1.52992 * 117.49939 * 111.25392 * 5 3 2 22 22 C 1.52997 * 117.49796 * 179.91460 * 5 3 2 23 23 H 1.08994 * 109.47414 * 299.99513 * 1 2 3 24 24 H 1.08999 * 109.47417 * 60.00337 * 1 2 3 25 25 H 1.09007 * 109.46705 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00326 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47510 * 60.00620 * 9 8 6 28 28 H 1.09001 * 109.47429 * 300.00326 * 9 8 6 29 29 H 1.09001 * 109.47002 * 299.99655 * 10 9 8 30 30 H 1.08993 * 109.46955 * 60.00092 * 10 9 8 31 31 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 32 32 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 33 33 H 0.97001 * 119.99673 * 179.97438 * 16 15 13 34 34 H 1.09001 * 117.50110 * 215.00279 * 21 5 3 35 35 H 1.08999 * 117.49859 * 0.02562 * 21 5 3 36 36 H 1.09002 * 117.49958 * 359.97438 * 22 5 3 37 37 H 1.09002 * 117.50203 * 144.99830 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1674 0.0006 6 6 4.2956 0.0459 0.7696 7 8 5.3347 0.2379 1.3555 8 8 3.7199 -1.1662 0.8037 9 6 4.4013 -2.1984 1.5642 10 6 3.6017 -3.5006 1.4869 11 6 4.3194 -4.5881 2.2888 12 16 3.3731 -6.1284 2.1980 13 6 4.3976 -7.1751 3.1775 14 1 5.3042 -6.7859 3.6166 15 6 4.0394 -8.5001 3.3846 16 7 2.9347 -8.9746 2.8490 17 14 5.1259 -9.6099 4.4224 18 1 6.3009 -8.8410 4.9057 19 1 4.3519 -10.1133 5.5855 20 1 5.5885 -10.7577 3.6015 21 6 4.3527 1.6590 -1.2640 22 6 4.3522 2.5245 -0.0015 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.9501 -0.8400 0.0004 27 1 4.4875 -1.8859 2.6048 28 1 5.3965 -2.3583 1.1492 29 1 2.6064 -3.3410 1.9017 30 1 3.5158 -3.8130 0.4462 31 1 5.3148 -4.7479 1.8745 32 1 4.4049 -4.2755 3.3295 33 1 2.6846 -9.9006 2.9935 34 1 5.2877 1.1714 -1.5399 35 1 3.7278 1.9829 -2.0963 36 1 3.7269 3.4173 -0.0037 37 1 5.2869 2.6063 0.5533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805445522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:51 Heat of formation + Delta-G solvation = -109.396705 kcal Electronic energy + Delta-G solvation = -19980.763514 eV Core-core repulsion = 16657.097570 eV Total energy + Delta-G solvation = -3323.665944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30283 -39.70107 -37.55244 -36.07133 -34.80853 -33.62727 -32.49935 -28.33699 -26.84199 -25.62412 -24.72721 -23.01620 -22.19614 -21.48361 -20.19724 -18.83350 -17.51874 -17.20001 -16.89158 -16.25974 -15.96769 -15.29478 -14.91673 -14.86883 -14.67615 -14.59577 -13.97429 -13.23411 -13.14857 -12.92423 -12.82760 -12.39845 -12.23298 -11.99346 -11.70557 -11.47822 -11.28958 -11.11684 -11.09428 -10.97637 -10.83924 -10.69103 -10.45670 -10.17088 -9.69697 -9.35794 -9.13818 -8.43137 -6.63234 -6.30621 -4.02053 1.62456 2.05913 2.34929 2.90267 3.16776 3.17292 3.25785 3.27937 3.45896 4.09560 4.13550 4.14936 4.39580 4.45563 4.96897 5.01902 5.06367 5.06846 5.10235 5.17260 5.28948 5.30507 5.35823 5.43526 5.59197 5.63827 5.65368 5.76322 6.00496 6.14997 6.22689 6.32907 6.54659 7.23702 7.40513 7.54071 7.91735 8.29490 9.16242 10.77571 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.030365 B = 0.002881 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.879476 B = 9715.002911 C =10434.929394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.720 5.720 3 C 0.555 3.445 4 O -0.535 6.535 5 C -0.184 4.184 6 C 0.502 3.498 7 O -0.494 6.494 8 O -0.359 6.359 9 C 0.074 3.926 10 C -0.099 4.099 11 C -0.115 4.115 12 S -0.123 6.123 13 C -0.519 4.519 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.869 5.869 17 Si 0.920 3.080 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.120 4.120 22 C -0.109 4.109 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.414 0.586 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.268 0.732 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 19.096 -8.021 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.375 5.375 3 C 0.340 3.660 4 O -0.413 6.413 5 C -0.189 4.189 6 C 0.344 3.656 7 O -0.380 6.380 8 O -0.276 6.276 9 C -0.001 4.001 10 C -0.137 4.137 11 C -0.264 4.264 12 S 0.105 5.895 13 C -0.667 4.667 14 H 0.092 0.908 15 C -0.138 4.138 16 N -0.504 5.504 17 Si 0.746 3.254 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.157 4.157 22 C -0.146 4.146 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.254 0.746 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.372 19.414 -8.366 21.184 hybrid contribution 2.068 -1.146 1.482 2.790 sum 0.696 18.267 -6.884 19.534 Atomic orbital electron populations 1.21618 0.78993 1.02932 1.02272 1.45988 1.08150 1.09231 1.74137 1.18935 0.86678 0.84199 0.76233 1.90710 1.69052 1.31357 1.50147 1.21148 0.93410 0.97008 1.07291 1.21931 0.82798 0.82468 0.78393 1.90689 1.22909 1.82807 1.41642 1.86182 1.53278 1.20135 1.68044 1.23400 0.96316 0.85024 0.95331 1.21324 0.99578 0.90511 1.02328 1.23179 1.02416 0.99457 1.01350 1.84637 1.34336 1.01220 1.69273 1.22732 1.10514 0.97271 1.36161 0.90766 1.25022 0.95615 0.97209 0.95910 1.70021 1.22457 1.15633 1.42331 0.86091 0.79931 0.79842 0.79529 1.19561 1.20518 1.20516 1.23197 1.01326 1.00733 0.90488 1.23231 1.01677 0.90787 0.98927 0.92059 0.92077 0.89982 0.74610 0.90797 0.90708 0.90276 0.90173 0.91652 0.91676 0.92256 0.86743 0.86500 0.85842 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.70 59.85 0.64 1.38 16 2 N -0.72 -7.45 5.53 -67.07 -0.37 -7.82 16 3 C 0.55 6.55 7.38 -10.98 -0.08 6.47 16 4 O -0.54 -7.64 16.26 5.56 0.09 -7.55 16 5 C -0.18 -1.91 2.56 -156.82 -0.40 -2.31 16 6 C 0.50 6.14 7.49 36.01 0.27 6.41 16 7 O -0.49 -7.12 16.01 -18.75 -0.30 -7.42 16 8 O -0.36 -4.26 7.31 -39.27 -0.29 -4.54 16 9 C 0.07 0.94 5.47 37.16 0.20 1.14 16 10 C -0.10 -1.43 5.60 -26.73 -0.15 -1.58 16 11 C -0.12 -2.16 5.67 37.16 0.21 -1.95 16 12 S -0.12 -3.06 21.44 -107.50 -2.30 -5.36 16 13 C -0.52 -14.43 9.50 30.94 0.29 -14.13 16 14 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 15 C 0.07 1.98 5.49 -17.43 -0.10 1.89 16 16 N -0.87 -25.31 13.22 55.49 0.73 -24.58 16 17 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.12 -0.89 9.94 -26.70 -0.27 -1.16 16 22 C -0.11 -0.93 9.56 -26.70 -0.26 -1.18 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.41 4.08 5.99 -40.82 -0.24 3.83 16 27 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 28 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 32 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 33 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.12 1.02 7.67 -51.93 -0.40 0.62 16 37 H 0.12 0.99 7.67 -51.93 -0.40 0.59 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -32.87 336.99 -7.25 -40.12 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.23 Total: 1.04 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 0.37 Total: -5.02 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.36 Total: -32.39 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.50 Total: -19.52 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.30 Total: -5.36 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.87 -7.25 -40.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805445522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.274 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds