Wall clock time and date at job start Tue Mar 31 2020 02:47:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31631 * 1
3 3 Si 1.86793 * 119.99702 * 2 1
4 4 H 1.48502 * 109.47208 * 270.00352 * 3 2 1
5 5 H 1.48498 * 109.47509 * 30.00339 * 3 2 1
6 6 H 1.48501 * 109.47401 * 150.00614 * 3 2 1
7 7 C 1.38796 * 120.00124 * 180.02562 * 2 1 3
8 8 H 1.08008 * 119.99872 * 359.97438 * 7 2 1
9 9 S 1.76196 * 119.99960 * 179.97438 * 7 2 1
10 10 C 1.81002 * 99.99971 * 179.97438 * 9 7 2
11 11 C 1.53000 * 109.47339 * 179.97438 * 10 9 7
12 12 C 1.52993 * 109.47610 * 179.97438 * 11 10 9
13 13 O 1.45198 * 109.47387 * 180.02562 * 12 11 10
14 14 C 1.34229 * 116.99881 * 180.02562 * 13 12 11
15 15 O 1.20822 * 120.00200 * 0.02562 * 14 13 12
16 16 C 1.50702 * 119.99848 * 179.97438 * 14 13 12
17 17 H 1.08997 * 109.70235 * 59.48365 * 16 14 13
18 18 C 1.53347 * 109.67368 * 180.02562 * 16 14 13
19 19 C 1.52915 * 108.67477 * 187.26786 * 18 16 14
20 20 N 1.45755 * 110.48805 * 309.24197 * 19 18 16
21 21 C 1.33362 * 124.10233 * 19.07670 * 20 19 18
22 22 O 1.21282 * 118.24236 * 177.75624 * 21 20 19
23 23 C 1.50173 * 123.50947 * 357.77733 * 21 20 19
24 24 H 0.96995 * 120.00203 * 359.97438 * 1 2 3
25 25 H 1.09001 * 109.47117 * 59.99942 * 10 9 7
26 26 H 1.09000 * 109.47323 * 299.99918 * 10 9 7
27 27 H 1.09001 * 109.46905 * 60.00006 * 11 10 9
28 28 H 1.09000 * 109.47004 * 300.00307 * 11 10 9
29 29 H 1.09001 * 109.46762 * 60.00188 * 12 11 10
30 30 H 1.09004 * 109.47320 * 300.00841 * 12 11 10
31 31 H 1.09004 * 109.59985 * 307.01717 * 18 16 14
32 32 H 1.09001 * 109.60890 * 67.50734 * 18 16 14
33 33 H 1.08997 * 109.30705 * 69.55232 * 19 18 16
34 34 H 1.09006 * 109.29993 * 188.93492 * 19 18 16
35 35 H 0.96997 * 117.95339 * 199.07850 * 20 19 18
36 36 H 1.08999 * 109.40190 * 257.45573 * 23 21 20
37 37 H 1.08997 * 109.39984 * 137.71247 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4976 2.0465 -1.4001
5 1 1.4477 2.6526 0.7001
6 1 3.5478 1.4403 0.6999
7 6 2.0103 -1.2020 -0.0005
8 1 1.4703 -2.1374 -0.0005
9 16 3.7723 -1.2019 -0.0012
10 6 4.0866 -2.9845 -0.0009
11 6 5.5958 -3.2362 -0.0021
12 6 5.8615 -4.7429 -0.0012
13 8 7.2937 -4.9818 -0.0017
14 6 7.6980 -6.2618 -0.0016
15 8 6.8822 -7.1530 -0.0016
16 6 9.1695 -6.5872 -0.0027
17 1 9.6415 -6.1574 0.8808
18 6 9.3618 -8.1085 -0.0029
19 6 10.8490 -8.4141 0.1792
20 7 11.6467 -7.6530 -0.7741
21 6 11.2122 -6.5661 -1.4131
22 8 11.9807 -5.9902 -2.1539
23 6 9.8225 -6.0168 -1.2642
24 1 -0.4850 0.8400 0.0004
25 1 3.6433 -3.4317 -0.8907
26 1 3.6441 -3.4313 0.8893
27 1 6.0394 -2.7889 0.8874
28 1 6.0380 -2.7894 -0.8926
29 1 5.4178 -5.1906 -0.8905
30 1 5.4193 -5.1894 0.8894
31 1 8.7949 -8.5489 0.8173
32 1 9.0173 -8.5206 -0.9514
33 1 11.1497 -8.1494 1.1929
34 1 11.0198 -9.4792 0.0225
35 1 12.5502 -7.9560 -0.9551
36 1 9.2287 -6.2928 -2.1356
37 1 9.8687 -4.9305 -1.1884
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000805492642.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:47:36
Heat of formation + Delta-G solvation = -147.212709 kcal
Electronic energy + Delta-G solvation = -19642.781654 eV
Core-core repulsion = 16317.475885 eV
Total energy + Delta-G solvation = -3325.305769 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 287.102 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.25748 -40.15533 -37.34755 -36.49712 -33.99308 -33.44137 -32.47830 -30.21169
-27.23120 -25.85449 -25.44194 -23.79883 -21.53265 -21.06127 -19.75938 -18.10168
-17.80804 -17.40121 -17.05560 -16.60561 -16.28631 -15.68999 -15.03351 -15.02282
-14.82787 -14.45147 -14.17860 -13.90311 -13.36713 -12.88468 -12.86600 -12.56724
-12.41406 -12.28303 -11.71040 -11.68075 -11.55362 -11.28235 -11.13292 -11.01795
-10.97310 -10.43951 -10.38055 -10.13310 -9.84571 -9.60466 -9.04576 -8.64212
-7.00907 -6.32104 -4.05757 1.88374 2.19300 2.30364 2.76657 2.97234
3.27801 3.42390 3.51981 3.89095 4.04057 4.14609 4.15122 4.27983
4.60029 4.61131 4.73064 4.76140 4.96683 4.98529 5.06701 5.07393
5.10607 5.25754 5.32163 5.34384 5.52620 5.62280 5.68638 5.99217
6.24968 6.28398 6.28744 6.51294 6.80266 7.48360 7.73320 7.91464
8.40494 9.13233 10.77271
Molecular weight = 287.10amu
Principal moments of inertia in cm(-1)
A = 0.037519 B = 0.002512 C = 0.002389
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 746.103001 B =11145.482677 C =11716.799944
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.880 5.880
2 C 0.092 3.908
3 Si 0.862 3.138
4 H -0.268 1.268
5 H -0.275 1.275
6 H -0.237 1.237
7 C -0.505 4.505
8 H 0.089 0.911
9 S -0.206 6.206
10 C -0.084 4.084
11 C -0.102 4.102
12 C 0.072 3.928
13 O -0.352 6.352
14 C 0.466 3.534
15 O -0.503 6.503
16 C -0.084 4.084
17 H 0.119 0.881
18 C -0.124 4.124
19 C 0.111 3.889
20 N -0.723 5.723
21 C 0.525 3.475
22 O -0.550 6.550
23 C -0.127 4.127
24 H 0.271 0.729
25 H 0.071 0.929
26 H 0.071 0.929
27 H 0.079 0.921
28 H 0.080 0.920
29 H 0.073 0.927
30 H 0.073 0.927
31 H 0.099 0.901
32 H 0.084 0.916
33 H 0.072 0.928
34 H 0.085 0.915
35 H 0.402 0.598
36 H 0.108 0.892
37 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.133 -17.352 1.769 28.180
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.517 5.517
2 C -0.117 4.117
3 Si 0.687 3.313
4 H -0.193 1.193
5 H -0.200 1.200
6 H -0.161 1.161
7 C -0.653 4.653
8 H 0.107 0.893
9 S 0.022 5.978
10 C -0.233 4.233
11 C -0.140 4.140
12 C -0.003 4.003
13 O -0.268 6.268
14 C 0.308 3.692
15 O -0.391 6.391
16 C -0.104 4.104
17 H 0.136 0.864
18 C -0.161 4.161
19 C -0.013 4.013
20 N -0.376 5.376
21 C 0.312 3.688
22 O -0.428 6.428
23 C -0.167 4.167
24 H 0.081 0.919
25 H 0.090 0.910
26 H 0.090 0.910
27 H 0.098 0.902
28 H 0.098 0.902
29 H 0.091 0.909
30 H 0.091 0.909
31 H 0.117 0.883
32 H 0.102 0.898
33 H 0.090 0.910
34 H 0.104 0.896
35 H 0.237 0.763
36 H 0.126 0.874
37 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges 22.538 -16.220 1.433 27.805
hybrid contribution -0.752 -0.489 0.025 0.898
sum 21.786 -16.710 1.458 27.495
Atomic orbital electron populations
1.69933 1.05922 1.27794 1.48027 1.24794 0.94527 0.99049 0.93281
0.86671 0.81728 0.83181 0.79770 1.19305 1.20034 1.16134 1.22115
0.86940 0.97506 1.58695 0.89302 1.84184 1.11840 1.04208 1.97555
1.22946 0.95944 1.00177 1.04222 1.21337 0.95984 0.92198 1.04494
1.23272 0.75984 0.98133 1.02899 1.86474 1.28989 1.28197 1.83187
1.23335 0.91879 0.81247 0.72723 1.90692 1.55456 1.47980 1.44969
1.21170 0.89609 0.98082 1.01493 0.86358 1.21842 0.95546 0.93134
1.05615 1.21425 0.90540 0.96536 0.92831 1.45516 1.18447 1.28819
1.44775 1.19956 0.89670 0.79836 0.79353 1.90803 1.55631 1.57996
1.38368 1.21668 0.92915 1.03890 0.98251 0.91900 0.91013 0.90978
0.90211 0.90173 0.90884 0.90889 0.88262 0.89756 0.91006 0.89646
0.76280 0.87424 0.86285
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -26.48 13.97 55.49 0.78 -25.71 16
2 C 0.09 2.66 5.50 -17.43 -0.10 2.57 16
3 Si 0.86 21.26 27.74 -169.99 -4.71 16.55 16
4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
6 H -0.24 -5.71 6.74 56.52 0.38 -5.33 16
7 C -0.51 -14.44 10.04 30.94 0.31 -14.13 16
8 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16
9 S -0.21 -4.89 19.41 -107.50 -2.09 -6.98 16
10 C -0.08 -1.56 5.67 37.16 0.21 -1.35 16
11 C -0.10 -1.48 5.60 -26.73 -0.15 -1.63 16
12 C 0.07 0.92 5.47 37.15 0.20 1.12 16
13 O -0.35 -4.10 10.17 -39.26 -0.40 -4.50 16
14 C 0.47 4.81 7.23 36.01 0.26 5.07 16
15 O -0.50 -6.50 15.65 -18.75 -0.29 -6.79 16
16 C -0.08 -0.56 2.71 -91.55 -0.25 -0.80 16
17 H 0.12 0.60 8.13 -51.93 -0.42 0.17 16
18 C -0.12 -0.61 4.70 -26.60 -0.13 -0.74 16
19 C 0.11 0.34 7.17 -4.49 -0.03 0.30 16
20 N -0.72 -3.96 5.45 -61.39 -0.33 -4.30 16
21 C 0.53 4.58 7.71 -11.87 -0.09 4.48 16
22 O -0.55 -7.26 17.78 5.56 0.10 -7.16 16
23 C -0.13 -0.94 5.30 -28.10 -0.15 -1.09 16
24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16
25 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16
26 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16
27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16
29 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16
30 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16
31 H 0.10 0.48 7.90 -51.93 -0.41 0.07 16
32 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16
33 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16
34 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16
35 H 0.40 1.83 8.80 -40.82 -0.36 1.47 16
36 H 0.11 0.78 8.09 -51.93 -0.42 0.36 16
37 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16
LS Contribution 328.87 15.07 4.96 4.96
Total: -1.00 -34.70 328.87 -7.32 -42.02
By element:
Atomic # 1 Polarization: 3.51 SS G_CDS: -5.41 Total: -1.90 kcal
Atomic # 6 Polarization: -6.29 SS G_CDS: 0.09 Total: -6.19 kcal
Atomic # 7 Polarization: -30.44 SS G_CDS: 0.44 Total: -30.00 kcal
Atomic # 8 Polarization: -17.85 SS G_CDS: -0.59 Total: -18.45 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.55 kcal
Atomic # 16 Polarization: -4.89 SS G_CDS: -2.09 Total: -6.98 kcal
Total LS contribution 4.96 Total: 4.96 kcal
Total: -34.70 -7.32 -42.02 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000805492642.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -105.198 kcal
(2) G-P(sol) polarization free energy of solvation -34.696 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.893 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.213 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds