Wall clock time and date at job start Tue Mar 31 2020 03:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99985 * 2 1 4 4 N 1.34777 * 120.00161 * 180.02562 * 2 1 3 5 5 C 1.47071 * 136.05157 * 359.62556 * 4 2 1 6 6 C 1.53238 * 88.07788 * 207.20591 * 5 4 2 7 7 C 1.50705 * 114.32773 * 220.47064 * 6 5 4 8 8 O 1.20823 * 119.99929 * 93.75664 * 7 6 5 9 9 O 1.34232 * 119.99713 * 273.76142 * 7 6 5 10 10 C 1.45201 * 116.99586 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46986 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47075 * 180.02562 * 11 10 9 13 13 S 1.80997 * 109.47298 * 179.97438 * 12 11 10 14 14 C 1.76198 * 100.00289 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99836 * 359.97438 * 14 13 12 16 16 C 1.38802 * 120.00002 * 180.02562 * 14 13 12 17 17 N 1.31626 * 119.99870 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99825 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47425 * 89.99543 * 18 16 14 20 20 H 1.48502 * 109.47184 * 209.99399 * 18 16 14 21 21 H 1.48505 * 109.47492 * 329.99508 * 18 16 14 22 22 C 1.47065 * 136.06111 * 180.02562 * 4 2 1 23 23 H 1.09002 * 109.47152 * 239.99552 * 1 2 3 24 24 H 1.09001 * 109.46980 * 119.99652 * 1 2 3 25 25 H 1.09004 * 109.47113 * 359.97438 * 1 2 3 26 26 H 1.08998 * 113.47201 * 321.93464 * 5 4 2 27 27 H 1.08996 * 113.46733 * 92.38466 * 5 4 2 28 28 H 1.08999 * 114.19973 * 87.73352 * 6 5 4 29 29 H 1.09000 * 109.47209 * 299.99959 * 10 9 7 30 30 H 1.09004 * 109.47408 * 60.00043 * 10 9 7 31 31 H 1.09000 * 109.46899 * 299.99886 * 11 10 9 32 32 H 1.08996 * 109.47489 * 59.99928 * 11 10 9 33 33 H 1.09000 * 109.47136 * 299.99706 * 12 11 10 34 34 H 1.09004 * 109.47392 * 59.99735 * 12 11 10 35 35 H 0.97001 * 119.99665 * 180.02562 * 17 16 14 36 36 H 1.09000 * 113.46271 * 267.62398 * 22 4 2 37 37 H 1.09001 * 113.46724 * 38.05790 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5945 0.0055 6 6 3.1648 -2.8710 0.6989 7 6 3.8766 -4.1042 0.2054 8 8 4.7051 -4.0141 -0.6695 9 8 3.5902 -5.3027 0.7377 10 6 4.3142 -6.4468 0.2132 11 6 3.8562 -7.7152 0.9361 12 6 4.6195 -8.9207 0.3839 13 16 4.0783 -10.4211 1.2395 14 6 5.0890 -11.6163 0.4304 15 1 5.7771 -11.3072 -0.3425 16 6 5.0001 -12.9551 0.7857 17 7 4.1611 -13.3318 1.7274 18 14 6.0711 -14.2222 -0.0725 19 1 7.3522 -14.3683 0.6643 20 1 5.3654 -15.5285 -0.1020 21 1 6.3474 -13.7774 -1.4622 22 6 3.5942 -1.5740 -0.0002 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3633 -0.5138 -0.8900 25 1 -0.3633 1.0277 0.0005 26 1 0.9614 -2.8244 0.6275 27 1 1.7566 -3.0286 -0.9918 28 1 3.1275 -2.8012 1.7860 29 1 4.1147 -6.5451 -0.8538 30 1 5.3832 -6.3040 0.3713 31 1 4.0554 -7.6172 2.0032 32 1 2.7873 -7.8579 0.7776 33 1 4.4207 -9.0189 -0.6833 34 1 5.6884 -8.7779 0.5427 35 1 4.0993 -14.2673 1.9759 36 1 4.0002 -1.7332 -0.9992 37 1 4.2289 -0.9380 0.6168 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805536729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:56 Heat of formation + Delta-G solvation = -97.404137 kcal Electronic energy + Delta-G solvation = -19225.763065 eV Core-core repulsion = 15902.617158 eV Total energy + Delta-G solvation = -3323.145907 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49097 -40.03093 -38.22507 -36.72511 -33.59801 -32.48145 -31.71258 -29.44114 -26.84197 -26.55748 -25.56509 -24.20565 -21.42648 -20.78272 -19.51453 -18.26478 -17.48915 -17.45279 -17.08125 -16.72309 -16.09171 -15.53321 -14.93038 -14.85179 -14.54865 -14.15235 -13.62814 -13.48002 -13.27716 -13.10693 -12.94969 -12.70423 -12.69734 -12.40679 -12.17120 -11.47070 -11.37684 -11.21386 -11.05567 -10.97797 -10.80631 -10.68208 -10.38424 -10.31258 -9.68121 -9.29949 -9.11248 -8.40506 -6.60907 -6.28516 -3.99860 1.83295 2.06471 2.13146 2.59887 3.18631 3.19286 3.26231 3.49167 3.56908 3.92010 4.16357 4.26243 4.45399 4.57791 4.72538 4.81733 4.89846 4.92284 5.02465 5.08263 5.08809 5.12134 5.13110 5.32903 5.40063 5.40926 5.49079 5.70335 5.81443 6.07869 6.30919 6.38236 6.60175 7.14691 7.48714 7.55516 7.65051 8.31122 9.18017 10.79600 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.055378 B = 0.002126 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.496411 B =13168.098316 C =13462.306880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.544 3.456 3 O -0.542 6.542 4 N -0.651 5.651 5 C 0.120 3.880 6 C -0.127 4.127 7 C 0.475 3.525 8 O -0.502 6.502 9 O -0.350 6.350 10 C 0.072 3.928 11 C -0.098 4.098 12 C -0.115 4.115 13 S -0.124 6.124 14 C -0.519 4.519 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.869 5.869 18 Si 0.920 3.080 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.122 3.878 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.141 0.859 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.268 0.732 36 H 0.102 0.898 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.001 21.695 -2.115 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.335 3.665 3 O -0.419 6.419 4 N -0.388 5.388 5 C -0.003 4.003 6 C -0.147 4.147 7 C 0.316 3.684 8 O -0.390 6.390 9 O -0.266 6.266 10 C -0.003 4.003 11 C -0.136 4.136 12 C -0.264 4.264 13 S 0.105 5.895 14 C -0.667 4.667 15 H 0.092 0.908 16 C -0.138 4.138 17 N -0.504 5.504 18 Si 0.746 3.254 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.001 4.001 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.159 0.841 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.408 22.177 -1.460 23.427 hybrid contribution 1.719 -0.923 -1.586 2.514 sum -5.689 21.255 -3.046 22.213 Atomic orbital electron populations 1.21878 0.90593 1.05668 1.04549 1.20443 0.90221 0.80956 0.74894 1.90755 1.70877 1.30153 1.50067 1.49563 1.09401 1.05552 1.74307 1.22847 0.96622 0.79501 1.01339 1.22785 0.97685 0.90553 1.03668 1.22951 0.80760 0.84869 0.79820 1.90703 1.31994 1.86797 1.29499 1.86484 1.62631 1.16109 1.61358 1.23341 0.95953 0.82320 0.98700 1.21290 1.01491 0.90036 1.00805 1.23183 1.01824 0.98492 1.02870 1.84651 1.56132 0.96718 1.52040 1.22692 1.26049 0.93327 1.24627 0.90827 1.25022 0.95766 0.97814 0.95180 1.70013 1.34617 1.17346 1.28470 0.86143 0.79830 0.79770 0.79657 1.20232 1.20722 1.19657 1.22897 0.84511 0.90708 1.01950 0.89130 0.89234 0.88659 0.88404 0.88662 0.84091 0.90996 0.90973 0.90292 0.90285 0.91722 0.91718 0.92222 0.87959 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.15 36.01 0.37 -0.43 16 2 C 0.54 4.95 8.19 -10.98 -0.09 4.86 16 3 O -0.54 -7.43 17.86 5.56 0.10 -7.33 16 4 N -0.65 -5.00 3.69 -185.39 -0.68 -5.68 16 5 C 0.12 0.63 7.98 -8.63 -0.07 0.57 16 6 C -0.13 -0.85 4.59 -91.40 -0.42 -1.27 16 7 C 0.47 4.88 7.52 36.01 0.27 5.15 16 8 O -0.50 -6.61 15.70 -18.75 -0.29 -6.90 16 9 O -0.35 -4.02 10.22 -39.26 -0.40 -4.42 16 10 C 0.07 0.92 5.47 37.16 0.20 1.12 16 11 C -0.10 -1.46 5.60 -26.73 -0.15 -1.61 16 12 C -0.12 -2.18 5.67 37.16 0.21 -1.97 16 13 S -0.12 -3.11 21.44 -107.50 -2.30 -5.42 16 14 C -0.52 -14.51 9.50 30.94 0.29 -14.21 16 15 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 16 C 0.07 1.99 5.49 -17.43 -0.10 1.89 16 17 N -0.87 -25.42 13.22 55.49 0.73 -24.69 16 18 Si 0.92 21.14 29.55 -169.99 -5.02 16.11 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C 0.12 0.95 7.97 -8.51 -0.07 0.89 16 23 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 26 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.10 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.07 0.93 8.13 -51.93 -0.42 0.50 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 34 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.10 0.87 7.46 -51.93 -0.39 0.49 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -34.67 340.46 -7.71 -42.39 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -5.42 Total: -4.17 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 0.45 Total: -5.02 kcal Atomic # 7 Polarization: -30.42 SS G_CDS: 0.05 Total: -30.38 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.60 Total: -18.65 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.30 Total: -5.42 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.67 -7.71 -42.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805536729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.019 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds