Wall clock time and date at job start Tue Mar 31 2020 03:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99985 * 2 1 4 4 N 1.34777 * 120.00161 * 180.02562 * 2 1 3 5 5 C 1.47071 * 136.05157 * 359.62556 * 4 2 1 6 6 C 1.53238 * 88.07788 * 207.20591 * 5 4 2 7 7 C 1.50705 * 114.32773 * 220.47064 * 6 5 4 8 8 O 1.20823 * 119.99929 * 93.75664 * 7 6 5 9 9 O 1.34232 * 119.99713 * 273.76142 * 7 6 5 10 10 C 1.45201 * 116.99586 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46986 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47075 * 180.02562 * 11 10 9 13 13 S 1.80997 * 109.47298 * 179.97438 * 12 11 10 14 14 C 1.76198 * 100.00289 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99836 * 359.97438 * 14 13 12 16 16 C 1.38802 * 120.00002 * 180.02562 * 14 13 12 17 17 N 1.31626 * 119.99870 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99825 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47425 * 89.99543 * 18 16 14 20 20 H 1.48502 * 109.47184 * 209.99399 * 18 16 14 21 21 H 1.48505 * 109.47492 * 329.99508 * 18 16 14 22 22 C 1.47065 * 136.06111 * 180.02562 * 4 2 1 23 23 H 1.09002 * 109.47152 * 239.99552 * 1 2 3 24 24 H 1.09001 * 109.46980 * 119.99652 * 1 2 3 25 25 H 1.09004 * 109.47113 * 359.97438 * 1 2 3 26 26 H 1.08998 * 113.47201 * 321.93464 * 5 4 2 27 27 H 1.08996 * 113.46733 * 92.38466 * 5 4 2 28 28 H 1.08999 * 114.19973 * 87.73352 * 6 5 4 29 29 H 1.09000 * 109.47209 * 299.99959 * 10 9 7 30 30 H 1.09004 * 109.47408 * 60.00043 * 10 9 7 31 31 H 1.09000 * 109.46899 * 299.99886 * 11 10 9 32 32 H 1.08996 * 109.47489 * 59.99928 * 11 10 9 33 33 H 1.09000 * 109.47136 * 299.99706 * 12 11 10 34 34 H 1.09004 * 109.47392 * 59.99735 * 12 11 10 35 35 H 0.97001 * 119.99665 * 180.02562 * 17 16 14 36 36 H 1.09000 * 113.46271 * 267.62398 * 22 4 2 37 37 H 1.09001 * 113.46724 * 38.05790 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5945 0.0055 6 6 3.1648 -2.8710 0.6989 7 6 3.8766 -4.1042 0.2054 8 8 4.7051 -4.0141 -0.6695 9 8 3.5902 -5.3027 0.7377 10 6 4.3142 -6.4468 0.2132 11 6 3.8562 -7.7152 0.9361 12 6 4.6195 -8.9207 0.3839 13 16 4.0783 -10.4211 1.2395 14 6 5.0890 -11.6163 0.4304 15 1 5.7771 -11.3072 -0.3425 16 6 5.0001 -12.9551 0.7857 17 7 4.1611 -13.3318 1.7274 18 14 6.0711 -14.2222 -0.0725 19 1 7.3522 -14.3683 0.6643 20 1 5.3654 -15.5285 -0.1020 21 1 6.3474 -13.7774 -1.4622 22 6 3.5942 -1.5740 -0.0002 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3633 -0.5138 -0.8900 25 1 -0.3633 1.0277 0.0005 26 1 0.9614 -2.8244 0.6275 27 1 1.7566 -3.0286 -0.9918 28 1 3.1275 -2.8012 1.7860 29 1 4.1147 -6.5451 -0.8538 30 1 5.3832 -6.3040 0.3713 31 1 4.0554 -7.6172 2.0032 32 1 2.7873 -7.8579 0.7776 33 1 4.4207 -9.0189 -0.6833 34 1 5.6884 -8.7779 0.5427 35 1 4.0993 -14.2673 1.9759 36 1 4.0002 -1.7332 -0.9992 37 1 4.2289 -0.9380 0.6168 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805536729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:56 Heat of formation + Delta-G solvation = -119.644903 kcal Electronic energy + Delta-G solvation = -19226.727497 eV Core-core repulsion = 15902.617158 eV Total energy + Delta-G solvation = -3324.110339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.21537 -40.82842 -38.98225 -37.67418 -34.88328 -34.57144 -32.34032 -29.98702 -28.18345 -27.46444 -27.07686 -25.04294 -22.69401 -21.57632 -20.08933 -19.58867 -18.97112 -18.16103 -17.92715 -17.60613 -16.89026 -16.77537 -16.40273 -16.03204 -15.89402 -15.21493 -14.74380 -14.32861 -14.25997 -13.94432 -13.79107 -13.66718 -13.46771 -13.26163 -13.11344 -12.97835 -12.94469 -12.61080 -12.38356 -12.36731 -11.98603 -11.72784 -11.48949 -11.44825 -11.14248 -11.04162 -10.34387 -9.94373 -8.66475 -8.37564 -6.13440 1.02065 1.22918 1.36612 1.40089 1.49205 1.50243 1.71380 1.99421 2.28091 2.97097 2.98017 3.29436 3.41743 3.62351 3.80777 3.88662 4.01119 4.02765 4.18901 4.27486 4.35867 4.41511 4.44976 4.55333 4.57644 4.64332 4.70470 4.71566 4.92540 5.05640 5.09278 5.15356 5.40752 5.43471 6.18427 6.55815 6.62625 6.99683 7.05300 8.71581 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.055378 B = 0.002126 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.496411 B =13168.098316 C =13462.306880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.535 3.465 3 O -0.600 6.600 4 N -0.651 5.651 5 C 0.127 3.873 6 C -0.114 4.114 7 C 0.479 3.521 8 O -0.533 6.533 9 O -0.348 6.348 10 C 0.080 3.920 11 C -0.086 4.086 12 C -0.093 4.093 13 S -0.184 6.184 14 C -0.540 4.540 15 H 0.074 0.926 16 C 0.016 3.984 17 N -0.906 5.906 18 Si 0.993 3.007 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.264 1.264 22 C 0.112 3.888 23 H 0.115 0.885 24 H 0.109 0.891 25 H 0.092 0.908 26 H 0.132 0.868 27 H 0.101 0.899 28 H 0.165 0.835 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.272 0.728 36 H 0.091 0.909 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.655 21.770 -2.476 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.329 3.671 3 O -0.481 6.481 4 N -0.387 5.387 5 C 0.005 3.995 6 C -0.134 4.134 7 C 0.322 3.678 8 O -0.422 6.422 9 O -0.264 6.264 10 C 0.004 3.996 11 C -0.124 4.124 12 C -0.242 4.242 13 S 0.044 5.956 14 C -0.688 4.688 15 H 0.092 0.908 16 C -0.189 4.189 17 N -0.542 5.542 18 Si 0.815 3.185 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.188 1.188 22 C -0.011 4.011 23 H 0.133 0.867 24 H 0.128 0.872 25 H 0.111 0.889 26 H 0.150 0.850 27 H 0.119 0.881 28 H 0.182 0.818 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.081 22.232 -1.816 23.725 hybrid contribution 1.929 -0.862 -1.480 2.580 sum -6.152 21.370 -3.295 22.481 Atomic orbital electron populations 1.21906 0.86999 1.06261 1.06603 1.21300 0.91885 0.80310 0.73636 1.90725 1.72280 1.32222 1.52883 1.49641 1.09330 1.06435 1.73256 1.23023 0.96813 0.77510 1.02167 1.22825 0.98003 0.87750 1.04794 1.23561 0.80210 0.85020 0.78985 1.90702 1.33522 1.87034 1.30981 1.86474 1.62375 1.16200 1.61375 1.23051 0.95967 0.82052 0.98498 1.21105 1.01085 0.89442 1.00812 1.23083 1.02270 0.96540 1.02294 1.84606 1.56909 1.00189 1.53870 1.23057 1.26415 0.94467 1.24868 0.90815 1.26043 0.97070 1.00029 0.95805 1.70139 1.36180 1.17992 1.29894 0.85030 0.77939 0.76860 0.78675 1.19395 1.19956 1.18778 1.22923 0.85100 0.91506 1.01595 0.86653 0.87247 0.88940 0.85028 0.88103 0.81792 0.90547 0.90941 0.90248 0.89899 0.91314 0.91496 0.91928 0.89047 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 10.15 71.24 0.72 -0.38 16 2 C 0.54 9.17 8.19 87.66 0.72 9.89 16 3 O -0.60 -16.74 17.86 -3.02 -0.05 -16.80 16 4 N -0.65 -8.88 3.69 -858.84 -3.17 -12.05 16 5 C 0.13 0.94 7.98 83.10 0.66 1.60 16 6 C -0.11 -1.26 4.59 -11.30 -0.05 -1.31 16 7 C 0.48 8.94 7.52 71.24 0.54 9.47 16 8 O -0.53 -13.47 15.70 21.97 0.34 -13.12 16 9 O -0.35 -7.19 10.22 -51.43 -0.53 -7.72 16 10 C 0.08 1.89 5.47 71.98 0.39 2.29 16 11 C -0.09 -2.44 5.60 30.59 0.17 -2.27 16 12 C -0.09 -3.45 5.67 71.98 0.41 -3.04 16 13 S -0.18 -9.37 21.44 -56.49 -1.21 -10.58 16 14 C -0.54 -30.35 9.50 67.95 0.65 -29.70 16 15 H 0.07 3.99 7.80 -2.91 -0.02 3.96 16 16 C 0.02 0.87 5.49 84.86 0.47 1.34 16 17 N -0.91 -53.44 13.22 21.65 0.29 -53.15 16 18 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 22 C 0.11 1.66 7.97 83.18 0.66 2.32 16 23 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 24 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.09 0.73 8.12 -2.38 -0.02 0.71 16 26 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.10 0.70 8.10 -2.39 -0.02 0.68 16 28 H 0.16 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.77 8.13 -2.39 -0.02 1.75 16 30 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.09 1.57 7.46 -2.39 -0.02 1.55 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -76.73 340.46 4.09 -72.64 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.06 Total: 5.52 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 5.34 Total: -9.80 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -2.88 Total: -65.20 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.23 Total: -37.64 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -9.37 SS G_CDS: -1.21 Total: -10.58 kcal Total: -76.73 4.09 -72.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805536729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.008 kcal (2) G-P(sol) polarization free energy of solvation -76.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds