Wall clock time and date at job start Tue Mar 31 2020 03:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34425 * 124.34592 * 2 1 4 4 O 1.21281 * 124.94631 * 0.43075 * 3 2 1 5 5 C 1.51288 * 110.11357 * 180.40770 * 3 2 1 6 6 C 1.54631 * 104.19528 * 16.25490 * 5 3 2 7 7 C 1.46765 * 124.35294 * 179.70280 * 2 1 3 8 8 H 1.09002 * 110.24161 * 281.98194 * 7 2 1 9 9 C 1.50696 * 110.24534 * 43.98356 * 7 2 1 10 10 O 1.20828 * 120.00193 * 18.54558 * 9 7 2 11 11 O 1.34227 * 119.99976 * 198.55048 * 9 7 2 12 12 C 1.45199 * 116.99941 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47008 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47200 * 179.97438 * 13 12 11 15 15 S 1.80997 * 109.47070 * 179.97438 * 14 13 12 16 16 C 1.76201 * 99.99815 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00090 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00004 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99917 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00170 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47618 * 89.99355 * 20 18 16 22 22 H 1.48500 * 109.47051 * 209.99766 * 20 18 16 23 23 H 1.48501 * 109.46906 * 329.99403 * 20 18 16 24 24 H 1.09002 * 109.47391 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46813 * 240.02361 * 1 2 3 26 26 H 1.09004 * 109.47041 * 120.02488 * 1 2 3 27 27 H 1.08996 * 110.48510 * 134.93241 * 5 3 2 28 28 H 1.08998 * 110.48581 * 257.44438 * 5 3 2 29 29 H 1.08990 * 110.96857 * 93.32047 * 6 5 3 30 30 H 1.09004 * 110.96692 * 217.08741 * 6 5 3 31 31 H 1.09001 * 109.47352 * 299.99568 * 12 11 9 32 32 H 1.08997 * 109.47534 * 59.99741 * 12 11 9 33 33 H 1.08996 * 109.47502 * 299.99663 * 13 12 11 34 34 H 1.09007 * 109.47352 * 60.00329 * 13 12 11 35 35 H 1.08996 * 109.46952 * 300.00410 * 14 13 12 36 36 H 1.09006 * 109.46659 * 60.00584 * 14 13 12 37 37 H 0.97001 * 119.99653 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1099 0.0000 4 8 1.7946 2.2443 0.0075 5 6 3.6898 0.7379 -0.0101 6 6 3.7011 -0.7486 -0.4358 7 6 2.2932 -1.2116 0.0063 8 1 2.3307 -1.6376 1.0089 9 6 1.7475 -2.2213 -0.9703 10 8 0.9905 -1.8691 -1.8437 11 8 2.1025 -3.5119 -0.8700 12 6 1.5380 -4.4285 -1.8444 13 6 2.0541 -5.8430 -1.5727 14 6 1.4587 -6.8090 -2.5991 15 16 2.0699 -8.4822 -2.2782 16 6 1.2505 -9.3598 -3.5677 17 1 0.6023 -8.8329 -4.2523 18 6 1.4388 -10.7281 -3.7045 19 7 0.8263 -11.3838 -4.6676 20 14 2.5605 -11.6394 -2.5210 21 1 1.7704 -12.1155 -1.3572 22 1 3.1711 -12.8023 -3.2138 23 1 3.6319 -10.7249 -2.0510 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3633 -0.5135 0.8902 26 1 -0.3633 -0.5142 -0.8898 27 1 4.2326 1.3461 -0.7337 28 1 4.1200 0.8553 0.9845 29 1 3.8269 -0.8446 -1.5141 30 1 4.4754 -1.3009 0.0966 31 1 0.4508 -4.4170 -1.7668 32 1 1.8339 -4.1205 -2.8471 33 1 3.1412 -5.8543 -1.6506 34 1 1.7584 -6.1514 -0.5699 35 1 0.3716 -6.7976 -2.5208 36 1 1.7541 -6.5009 -3.6021 37 1 0.9577 -12.3401 -4.7629 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805543101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:35 Heat of formation + Delta-G solvation = -127.406089 kcal Electronic energy + Delta-G solvation = -19790.388445 eV Core-core repulsion = 16465.941555 eV Total energy + Delta-G solvation = -3324.446889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50812 -40.05322 -37.30776 -36.42823 -33.78821 -33.22771 -32.50253 -29.37114 -27.06194 -26.61302 -25.64976 -23.36954 -21.67048 -21.44544 -19.85441 -18.43836 -17.50142 -17.28291 -16.96275 -16.71536 -16.39131 -15.26433 -15.04358 -14.94373 -14.40816 -14.38725 -14.00201 -13.56803 -13.35261 -13.01248 -12.93897 -12.83403 -12.58732 -12.43612 -12.30137 -11.70122 -11.62159 -11.32376 -11.16995 -11.05053 -10.92835 -10.49761 -10.37598 -10.26012 -9.87860 -9.22384 -9.07158 -8.67665 -7.03982 -6.34467 -4.08453 1.73102 1.93326 2.24022 2.62360 2.94541 3.25113 3.39433 3.48841 3.73332 3.81694 4.20330 4.25486 4.34824 4.45968 4.70946 4.79661 4.91720 4.92974 5.00792 5.04355 5.14636 5.20287 5.26736 5.27795 5.33816 5.50344 5.57622 5.62361 5.89329 5.93899 6.20270 6.23836 6.46552 6.56233 7.38497 7.68941 7.89070 8.38300 9.10698 10.74909 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.049485 B = 0.002474 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.696245 B =11314.501896 C =11618.195727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.605 5.605 3 C 0.521 3.479 4 O -0.526 6.526 5 C -0.153 4.153 6 C -0.119 4.119 7 C 0.141 3.859 8 H 0.121 0.879 9 C 0.453 3.547 10 O -0.494 6.494 11 O -0.350 6.350 12 C 0.073 3.927 13 C -0.101 4.101 14 C -0.085 4.085 15 S -0.205 6.205 16 C -0.506 4.506 17 H 0.089 0.911 18 C 0.092 3.908 19 N -0.880 5.880 20 Si 0.862 3.138 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.237 1.237 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.860 20.985 11.832 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.341 5.341 3 C 0.310 3.690 4 O -0.402 6.402 5 C -0.193 4.193 6 C -0.157 4.157 7 C 0.035 3.965 8 H 0.139 0.861 9 C 0.294 3.706 10 O -0.381 6.381 11 O -0.266 6.266 12 C -0.002 4.002 13 C -0.139 4.139 14 C -0.233 4.233 15 S 0.023 5.977 16 C -0.653 4.653 17 H 0.107 0.893 18 C -0.117 4.117 19 N -0.516 5.516 20 Si 0.687 3.313 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.161 1.161 24 H 0.105 0.895 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.962 21.082 12.241 25.096 hybrid contribution -0.748 -0.438 -0.820 1.193 sum 5.214 20.644 11.421 24.162 Atomic orbital electron populations 1.21826 0.77112 1.04242 1.02754 1.47932 1.07023 1.05602 1.73514 1.20861 0.89296 0.84055 0.74828 1.90748 1.78657 1.20656 1.50108 1.22399 0.94620 0.96830 1.05488 1.22662 0.93615 0.95594 1.03790 1.21275 0.91804 0.84378 0.99052 0.86103 1.23645 0.79250 0.83071 0.84670 1.90684 1.33102 1.80260 1.34022 1.86461 1.66999 1.17969 1.55165 1.23297 0.98542 0.87750 0.90641 1.21339 1.02053 0.89924 1.00606 1.22949 1.02689 0.97156 1.00552 1.84163 1.65150 1.01882 1.46541 1.22112 1.32502 0.95677 1.15020 0.89300 1.24800 0.95168 0.96533 0.95157 1.69937 1.41570 1.09225 1.30889 0.86669 0.82415 0.80866 0.81382 1.19314 1.20016 1.16134 0.89550 0.91970 0.90163 0.87221 0.86935 0.89096 0.87165 0.90867 0.90825 0.90129 0.90187 0.91012 0.90958 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.49 59.85 0.63 1.36 16 2 N -0.61 -5.54 3.00 -173.90 -0.52 -6.06 16 3 C 0.52 5.17 8.02 -10.85 -0.09 5.08 16 4 O -0.53 -7.30 17.35 5.56 0.10 -7.20 16 5 C -0.15 -0.82 6.86 -26.74 -0.18 -1.00 16 6 C -0.12 -0.58 6.67 -25.00 -0.17 -0.74 16 7 C 0.14 1.01 3.83 -68.07 -0.26 0.75 16 8 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 9 C 0.45 4.70 6.82 36.00 0.25 4.95 16 10 O -0.49 -6.60 14.22 -18.75 -0.27 -6.87 16 11 O -0.35 -3.82 10.22 -39.25 -0.40 -4.23 16 12 C 0.07 0.88 5.47 37.16 0.20 1.09 16 13 C -0.10 -1.39 5.60 -26.73 -0.15 -1.54 16 14 C -0.09 -1.53 5.67 37.16 0.21 -1.32 16 15 S -0.21 -4.77 19.41 -107.50 -2.09 -6.86 16 16 C -0.51 -14.28 10.04 30.94 0.31 -13.97 16 17 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 18 C 0.09 2.63 5.50 -17.43 -0.10 2.54 16 19 N -0.88 -26.24 13.97 55.49 0.78 -25.46 16 20 Si 0.86 20.94 27.74 -169.99 -4.72 16.22 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.24 -5.60 6.74 56.52 0.38 -5.22 16 24 H 0.09 0.80 7.53 -51.93 -0.39 0.41 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.83 6.19 -51.93 -0.32 0.51 16 27 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.51 7.92 -51.93 -0.41 0.10 16 30 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 32 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16 35 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 36 H 0.07 1.30 8.14 -51.91 -0.42 0.88 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -34.33 329.36 -6.85 -41.18 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.35 Total: -2.86 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 0.65 Total: -2.82 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.25 Total: -31.53 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.57 Total: -18.30 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.72 Total: 16.22 kcal Atomic # 16 Polarization: -4.77 SS G_CDS: -2.09 Total: -6.86 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.33 -6.85 -41.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805543101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.225 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds