Wall clock time and date at job start Tue Mar 31 2020 02:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34769 * 119.99936 * 2 1 4 4 O 1.21282 * 119.99850 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00466 * 0.02562 * 3 2 1 6 6 S 1.81000 * 109.47238 * 179.97438 * 5 3 2 7 7 C 1.76205 * 99.99610 * 179.97438 * 6 5 3 8 8 H 1.07998 * 120.00040 * 0.02562 * 7 6 5 9 9 C 1.38796 * 119.99527 * 179.97438 * 7 6 5 10 10 N 1.31625 * 120.00398 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99780 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47210 * 59.99938 * 11 9 7 13 13 H 1.48498 * 109.47318 * 180.02562 * 11 9 7 14 14 H 1.48510 * 109.46991 * 299.99949 * 11 9 7 15 15 C 1.46500 * 119.99822 * 180.02562 * 2 1 3 16 16 H 1.09001 * 110.36298 * 182.33195 * 15 2 1 17 17 C 1.54473 * 110.40419 * 60.00072 * 15 2 1 18 18 C 1.54370 * 103.04376 * 241.58302 * 17 15 2 19 19 C 1.53003 * 110.32101 * 136.71839 * 18 17 15 20 20 C 1.52998 * 110.32707 * 258.82126 * 18 17 15 21 21 O 1.45949 * 105.07175 * 17.82007 * 18 17 15 22 22 C 1.34564 * 108.39898 * 327.56288 * 21 18 17 23 23 O 1.20827 * 125.94336 * 213.35977 * 22 21 18 24 24 H 1.08998 * 109.47145 * 89.99711 * 1 2 3 25 25 H 1.08996 * 109.46927 * 209.99518 * 1 2 3 26 26 H 1.08998 * 109.46879 * 329.99857 * 1 2 3 27 27 H 1.09004 * 109.46923 * 59.99646 * 5 3 2 28 28 H 1.09004 * 109.46818 * 300.00196 * 5 3 2 29 29 H 0.97006 * 120.00587 * 179.97438 * 10 9 7 30 30 H 1.08993 * 110.70002 * 359.97222 * 17 15 2 31 31 H 1.09001 * 110.69842 * 123.02534 * 17 15 2 32 32 H 1.08991 * 109.47310 * 60.00134 * 19 18 17 33 33 H 1.08999 * 109.47096 * 180.02562 * 19 18 17 34 34 H 1.08997 * 109.46683 * 299.99881 * 19 18 17 35 35 H 1.09000 * 109.47142 * 59.99461 * 20 18 17 36 36 H 1.08993 * 109.47453 * 180.02562 * 20 18 17 37 37 H 1.08999 * 109.46796 * 300.00611 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 16 2.5617 3.8480 0.0012 7 6 1.4416 5.2082 0.0010 8 1 0.3763 5.0304 0.0011 9 6 1.9284 6.5080 0.0019 10 7 3.2267 6.7246 0.0024 11 14 0.7409 7.9500 0.0025 12 1 -0.1144 7.8864 1.2147 13 1 1.5070 9.2221 0.0028 14 1 -0.1138 7.8878 -1.2104 15 6 2.1975 -1.2688 -0.0006 16 1 3.2714 -1.0868 0.0411 17 6 1.8399 -2.0965 -1.2548 18 6 1.2106 -3.3749 -0.6608 19 6 -0.0427 -3.7649 -1.4469 20 6 2.2234 -4.5215 -0.6743 21 8 0.8591 -3.0226 0.7113 22 6 1.7599 -2.1319 1.1651 23 8 2.1519 -2.0373 2.3041 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 0.7591 2.5298 0.8908 28 1 0.7584 2.5302 -0.8892 29 1 3.5670 7.6330 0.0027 30 1 1.1186 -1.5643 -1.8749 31 1 2.7362 -2.3353 -1.8273 32 1 0.2240 -3.9502 -2.4873 33 1 -0.4756 -4.6677 -1.0161 34 1 -0.7697 -2.9543 -1.3970 35 1 3.0940 -4.2443 -0.0798 36 1 1.7651 -5.4161 -0.2528 37 1 2.5327 -4.7210 -1.7002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817072128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:25 Heat of formation + Delta-G solvation = -135.536774 kcal Electronic energy + Delta-G solvation = -20889.817659 eV Core-core repulsion = 17565.018196 eV Total energy + Delta-G solvation = -3324.799462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.68605 -40.61825 -39.10293 -36.79478 -34.74035 -34.58777 -32.51351 -30.06216 -28.40621 -27.87776 -27.65774 -25.63209 -22.98461 -21.82099 -20.62766 -19.69735 -18.60832 -18.11446 -17.62350 -17.54107 -16.88003 -16.75470 -16.34279 -15.98300 -15.25437 -14.87585 -14.79022 -14.51047 -14.43236 -14.29861 -13.67895 -13.53652 -13.47957 -13.33360 -13.17115 -13.06694 -12.86367 -12.75311 -12.64222 -12.54796 -11.96393 -11.82470 -11.73344 -11.57757 -11.12805 -11.06318 -10.29478 -9.90329 -8.68947 -8.34665 -6.13727 0.43742 1.23188 1.38622 1.44084 1.44909 1.54592 1.85519 2.21133 2.26933 2.72809 2.99711 3.15315 3.24523 3.52459 3.63211 3.67338 3.97218 4.04594 4.12731 4.21530 4.42753 4.53542 4.55148 4.69513 4.73783 4.78869 4.81824 4.87799 4.95253 5.18438 5.21406 5.30759 5.41583 5.61131 5.95161 6.14787 6.19566 6.92887 7.06491 8.74339 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.036888 B = 0.003474 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.881309 B = 8057.886150 C = 8248.343678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.596 5.596 3 C 0.537 3.463 4 O -0.555 6.555 5 C -0.122 4.122 6 S -0.151 6.151 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.014 3.986 10 N -0.912 5.912 11 Si 0.999 3.001 12 H -0.263 1.263 13 H -0.280 1.280 14 H -0.259 1.259 15 C 0.078 3.922 16 H 0.117 0.883 17 C -0.146 4.146 18 C 0.100 3.900 19 C -0.139 4.139 20 C -0.168 4.168 21 O -0.348 6.348 22 C 0.485 3.515 23 O -0.482 6.482 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.271 0.729 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.511 -22.936 -7.130 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.333 5.333 3 C 0.325 3.675 4 O -0.432 6.432 5 C -0.273 4.273 6 S 0.076 5.924 7 C -0.694 4.694 8 H 0.103 0.897 9 C -0.191 4.191 10 N -0.548 5.548 11 Si 0.820 3.180 12 H -0.188 1.188 13 H -0.205 1.205 14 H -0.184 1.184 15 C -0.028 4.028 16 H 0.134 0.866 17 C -0.184 4.184 18 C 0.064 3.936 19 C -0.196 4.196 20 C -0.225 4.225 21 O -0.266 6.266 22 C 0.324 3.676 23 O -0.364 6.364 24 H 0.116 0.884 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.127 0.873 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.598 -22.893 -6.475 25.297 hybrid contribution -1.341 1.117 0.523 1.822 sum -9.939 -21.776 -5.952 24.666 Atomic orbital electron populations 1.22235 0.76293 1.04458 1.04818 1.47636 1.08456 1.02976 1.74200 1.20306 0.87375 0.85261 0.74546 1.90689 1.15595 1.87142 1.49797 1.23370 1.02794 0.94198 1.06914 1.85624 1.12471 0.97215 1.97066 1.23167 0.94675 0.92517 1.59072 0.89677 1.26133 0.97586 1.01705 0.93664 1.70176 1.14170 1.22568 1.47889 0.84997 0.77589 0.75812 0.79558 1.18794 1.20519 1.18354 1.22405 1.00505 0.84788 0.95093 0.86556 1.23492 1.05069 0.94215 0.95601 1.23450 0.98612 0.95021 0.76526 1.21956 0.94072 1.03219 1.00348 1.22377 0.97393 0.97427 1.05333 1.87351 1.46790 1.59012 1.33442 1.23662 0.75097 0.80019 0.88848 1.90700 1.52095 1.70512 1.23099 0.88432 0.90061 0.89873 0.87487 0.86261 0.91976 0.86327 0.85865 0.87301 0.90733 0.90773 0.93399 0.90401 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.16 9.38 127.77 1.20 2.36 16 2 N -0.60 -16.22 2.79 -822.53 -2.29 -18.51 16 3 C 0.54 20.25 7.69 87.66 0.67 20.92 16 4 O -0.56 -25.94 15.22 -3.04 -0.05 -25.99 16 5 C -0.12 -4.80 4.71 71.24 0.34 -4.47 16 6 S -0.15 -8.36 20.57 -56.49 -1.16 -9.53 16 7 C -0.55 -30.92 9.50 67.95 0.65 -30.27 16 8 H 0.09 4.42 7.80 -2.91 -0.02 4.40 16 9 C 0.01 0.79 5.49 84.86 0.47 1.26 16 10 N -0.91 -55.92 13.22 21.65 0.29 -55.64 16 11 Si 1.00 43.18 29.55 68.60 2.03 45.20 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 14 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 15 C 0.08 1.92 3.45 45.00 0.16 2.08 16 16 H 0.12 3.43 6.97 -2.39 -0.02 3.41 16 17 C -0.15 -1.95 5.81 31.56 0.18 -1.76 16 18 C 0.10 1.19 1.25 -10.33 -0.01 1.18 16 19 C -0.14 -0.82 8.82 71.98 0.63 -0.19 16 20 C -0.17 -1.60 8.70 71.98 0.63 -0.97 16 21 O -0.35 -7.27 9.90 -55.10 -0.55 -7.81 16 22 C 0.48 13.32 6.84 71.49 0.49 13.81 16 23 O -0.48 -17.66 18.00 21.55 0.39 -17.27 16 24 H 0.10 1.18 7.96 -2.39 -0.02 1.17 16 25 H 0.08 1.36 6.57 -2.39 -0.02 1.34 16 26 H 0.08 1.57 6.44 -2.39 -0.02 1.55 16 27 H 0.11 3.90 7.40 -2.39 -0.02 3.88 16 28 H 0.12 4.05 8.11 -2.39 -0.02 4.03 16 29 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 30 H 0.12 1.24 7.05 -2.39 -0.02 1.22 16 31 H 0.12 1.22 7.82 -2.39 -0.02 1.20 16 32 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.05 0.63 7.95 -2.39 -0.02 0.61 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -82.23 325.31 5.12 -77.10 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.07 Total: 8.50 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 5.40 Total: 3.93 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -2.01 Total: -74.14 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -0.20 Total: -51.07 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.53 kcal Total: -82.23 5.12 -77.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817072128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.432 kcal (2) G-P(sol) polarization free energy of solvation -82.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds